Jean Ye
Research
Publications
2026
External validation improves generalizability, replicability and reproducibility in predictive models for neuroimaging
Rosenblatt M, Foster M, Adkinson B, Tejavibulya L, Khaitova M, Ye J, Sun H, Rodriguez R, Camp C, Chinta A, McCusker M, Han L, Fields C, Mehta S, Scheinost D. External validation improves generalizability, replicability and reproducibility in predictive models for neuroimaging. Nature Methods 2026, 1-11. PMID: 42203860, DOI: 10.1038/s41592-026-03115-9.Peer-Reviewed Reviews, Practice Guidelines, Standards, and Consensus Statements
2025
BrainEffeX: A Web App for Exploring fMRI Effect Sizes
Shearer H, Rosenblatt M, Ye J, Jiang R, Tejavibulya L, Foster M, Liang Q, Dadashkarimi J, Westwater M, Cahill C, Cheng I, Fischbach A, Humphries A, Baskaran A, Rolison M, Peterson H, Adkinson B, Mehta S, Camp C, Nichols T, Curtiss J, Scheinost D, Noble S. BrainEffeX: A Web App for Exploring fMRI Effect Sizes. Aperture Neuro 2025, 5: 10.52294/001c.146251. PMID: 41675933, PMCID: PMC12889895, DOI: 10.52294/001c.146251.Peer-Reviewed Original ResearchVariation in moment-to-moment brain state engagement follows a consistent trajectory during development
Ye J, Tejavibulya L, Dai W, Cope L, Hardee J, Heitzeg M, Lichenstein S, Yip S, Banaschewski T, Baker G, Bokde A, Brühl R, Desrivières S, Flor H, Gowland P, Grigis A, Heinz A, Martinot J, Martinot M, Artiges E, Nees F, Orfanos D, Poustka L, Hohmann S, Holz N, Baeuchl C, Smolka M, Vaidya N, Walter H, Whelan R, Schumann G, Garavan H, Chaarani B, Gee D, Baskin-Sommers A, Casey B, Consortium I, Scheinost D. Variation in moment-to-moment brain state engagement follows a consistent trajectory during development. Neuron 2025, 113: 3863-3875.e6. PMID: 40967219, PMCID: PMC12483157, DOI: 10.1016/j.neuron.2025.08.020.Peer-Reviewed Original ResearchTrends in self-citation rates in high-impact neurology, neuroscience, and psychiatry journals
Rosenblatt M, Mehta S, Peterson H, Dadashkarimi J, Rodriguez R, Foster M, Adkinson B, Liang Q, Kimble V, Ye J, McCusker M, Farruggia M, Rolison M, Westwater M, Jiang R, Noble S, Scheinost D. Trends in self-citation rates in high-impact neurology, neuroscience, and psychiatry journals. ELife 2025, 12: rp88540. PMID: 40366360, PMCID: PMC12077878, DOI: 10.7554/elife.88540.Peer-Reviewed Original ResearchTrends in self-citation rates in high-impact neurology, neuroscience, and psychiatry journals
Rosenblatt M, Mehta S, Peterson H, Dadashkarimi J, Rodriguez R, Foster M, Adkinson B, Liang Q, Kimble V, Ye J, McCusker M, Farruggia M, Rolison M, Westwater M, Jiang R, Noble S, Scheinost D. Trends in self-citation rates in high-impact neurology, neuroscience, and psychiatry journals. ELife 2025, 12 DOI: 10.7554/elife.88540.4.Peer-Reviewed Original ResearchConnectome-based predictive modeling of early and chronic psychosis symptoms
Foster M, Ye J, Powers A, Dvornek N, Scheinost D. Connectome-based predictive modeling of early and chronic psychosis symptoms. Neuropsychopharmacology 2025, 50: 877-885. PMID: 40016363, PMCID: PMC12032145, DOI: 10.1038/s41386-025-02064-9.Peer-Reviewed Original ResearchNeural Variability and Cognitive Control in Individuals With Opioid Use Disorder
Ye J, Mehta S, Peterson H, Ibrahim A, Saeed G, Linsky S, Kreinin I, Tsang S, Nwanaji-Enwerem U, Raso A, Arora J, Tokoglu F, Yip S, Hahn C, Lacadie C, Greene A, Constable R, Barry D, Redeker N, Yaggi H, Scheinost D. Neural Variability and Cognitive Control in Individuals With Opioid Use Disorder. JAMA Network Open 2025, 8: e2455165. PMID: 39821393, PMCID: PMC11742521, DOI: 10.1001/jamanetworkopen.2024.55165.Peer-Reviewed Original ResearchErratum for: Alterations in Volume and Intrinsic Resting-State Functional Connectivity Detected at Brain MRI in Individuals with Opioid Use Disorder.
Mehta S, Peterson H, Ye J, Ibrahim A, Saeed G, Linsky S, Kreinin I, Tsang S, Nwanaji-Enwerem U, Raso A, Arora J, Tokoglu F, Yip S, Hahn C, Lacadie C, Greene A, Jeon S, Constable R, Barry D, Redeker N, Yaggi H, Scheinost D. Erratum for: Alterations in Volume and Intrinsic Resting-State Functional Connectivity Detected at Brain MRI in Individuals with Opioid Use Disorder. Radiology 2025, 314: e249023. PMID: 39873610, PMCID: PMC11788710, DOI: 10.1148/radiol.249023.Commentaries, Editorials and Letters
2024
Alterations in Volume and Intrinsic Resting-State Functional Connectivity Detected at Brain MRI in Individuals with Opioid Use Disorder.
Mehta S, Peterson H, Ye J, Ibrahim A, Saeed G, Linsky S, Kreinin I, Tsang S, Nwanaji-Enwerem U, Raso A, Arora J, Tokoglu F, Yip S, Hahn C, Lacadie C, Greene A, Jeon S, Constable R, Barry D, Redeker N, Yaggi H, Scheinost D. Alterations in Volume and Intrinsic Resting-State Functional Connectivity Detected at Brain MRI in Individuals with Opioid Use Disorder. Radiology 2024, 313: e240514. PMID: 39656127, PMCID: PMC11694074, DOI: 10.1148/radiol.240514.Peer-Reviewed Original ResearchNetwork state dynamics underpin basal craving in a transdiagnostic population
Ye J, Garrison K, Lacadie C, Potenza M, Sinha R, Goldfarb E, Scheinost D. Network state dynamics underpin basal craving in a transdiagnostic population. Molecular Psychiatry 2024, 30: 619-628. PMID: 39183336, DOI: 10.1038/s41380-024-02708-0.Peer-Reviewed Original Research