2012
SRMA: an R package for resequencing array data analysis
Zhang N, Xu Y, O'Hely M, Speed TP, Scharfe C, Wang W. SRMA: an R package for resequencing array data analysis. Bioinformatics 2012, 28: 1928-1930. PMID: 22581181, PMCID: PMC3389772, DOI: 10.1093/bioinformatics/bts286.Peer-Reviewed Original ResearchAlgorithmsComputational BiologyHumansOligonucleotide Array Sequence AnalysisSequence Analysis, DNASoftware
2010
Identification of rare DNA variants in mitochondrial disorders with improved array-based sequencing
Wang W, Shen P, Thiyagarajan S, Lin S, Palm C, Horvath R, Klopstock T, Cutler D, Pique L, Schrijver I, Davis RW, Mindrinos M, Speed TP, Scharfe C. Identification of rare DNA variants in mitochondrial disorders with improved array-based sequencing. Nucleic Acids Research 2010, 39: 44-58. PMID: 20843780, PMCID: PMC3017602, DOI: 10.1093/nar/gkq750.Peer-Reviewed Original ResearchMeSH KeywordsAlgorithmsBase SequenceData Interpretation, StatisticalGenetic VariationHumansINDEL MutationMitochondrial DiseasesMolecular Sequence DataOligonucleotide Array Sequence AnalysisPolymorphism, Single NucleotideQuality ControlSequence Analysis, DNAConceptsDNA variantsFunctional DNA variantsMitochondrial DNA maintenanceRare DNA variantsSecond-generation sequencing technologiesNovel rare variantsSanger capillary sequencingSynergistic genetic effectsNuclear candidate genesDNA maintenanceRare variantsGenomic variationSequencing technologiesRare heterozygous variantsCandidate genesGenetic effectsFalse discovery rateMitochondrial disordersCapillary sequencingSequence verificationGenesNovel statistical methodSequencingDiscovery rateHeterozygous variants