Liangwen Zhong, PhD
Associate Research Scientist in GeneticsCards
About
Research
Publications
2024
Selective utilization of glucose metabolism guides mammalian gastrulation
Cao D, Bergmann J, Zhong L, Hemalatha A, Dingare C, Jensen T, Cox A, Greco V, Steventon B, Sozen B. Selective utilization of glucose metabolism guides mammalian gastrulation. Nature 2024, 634: 919-928. PMID: 39415005, PMCID: PMC11499262, DOI: 10.1038/s41586-024-08044-1.Peer-Reviewed Original ResearchConceptsCellular metabolismMammalian gastrulationHexosamine biosynthetic pathwayTranscription factor networksCellular signaling pathwaysSignaling morphogensGlucose metabolismCellular programmeBiosynthetic pathwayFate acquisitionCell fateHousekeeping natureGenetic mechanismsMesoderm migrationFactor networksERK activationExpression patternsSignaling pathwayDevelopmental processesStem cell modelCell typesSpecialized functionsDevelopmental contextMammalian embryosMouse embryos
2023
Altered chromatin occupancy of patient-associated H4 mutants misregulate neuronal differentiation.
Feng L, Barrows D, Zhong L, Mätlik K, Porter EG, Djomo AM, Yau I, Soshnev AA, Carroll TS, Wen D, Hatten ME, Garcia BA, Allis CD. Altered chromatin occupancy of patient-associated H4 mutants misregulate neuronal differentiation. BioRxiv 2023 PMID: 37808786, DOI: 10.1101/2023.09.29.560141.Peer-Reviewed Original Research In PressSelf-patterning of human stem cells into post-implantation lineages
Pedroza M, Gassaloglu S, Dias N, Zhong L, Hou T, Kretzmer H, Smith Z, Sozen B. Self-patterning of human stem cells into post-implantation lineages. Nature 2023, 622: 574-583. PMID: 37369348, PMCID: PMC10584676, DOI: 10.1038/s41586-023-06354-4.Peer-Reviewed Original ResearchConceptsStem cellsPlacental cell typesPost-implantation embryonic developmentHuman pluripotent stem cellsPluripotent stem cellsHuman embryonic developmentEmbryonic developmentHuman stem cellsCongenital pathologyPost-implantation epiblastDiverse cell statesSingle-cell transcriptomicsAmniotic ectodermExtra-embryonic endodermSpontaneous differentiationSignaling hubThree-dimensional structureSecreted modulatorsCell typesDual role of lipids for genome stability and pluripotency facilitates full potency of mouse embryonic stem cells
Zhong L, Gordillo M, Wang X, Qin Y, Huang Y, Soshnev A, Kumar R, Nanjangud G, James D, Allis C, Evans T, Carey B, Wen D. Dual role of lipids for genome stability and pluripotency facilitates full potency of mouse embryonic stem cells. Protein & Cell 2023, 14: 591-602. PMID: 37029701, PMCID: PMC10392030, DOI: 10.1093/procel/pwad008.Peer-Reviewed Original ResearchConceptsFemale embryonic stem cellsMouse embryonic stem cellsEmbryonic stem cellsGenome stabilityDNA hypomethylationLipid-rich albuminTCA cycle intermediatesMaintenance of murine embryonic stem cellsX chromosome lossMurine embryonic stem cellsNucleotide biosynthesisGenome integrityLipid biogenesisStem cellsCycle intermediatesERK2 phosphorylationDe novoPluripotency transitionIntracellular metabolismGSK3B inhibitionLong-term cultureDual rolePluripotent stateProlonged cultureDNA
2022
Publisher Correction: Histone variant H3.3 maintains adult haematopoietic stem cell homeostasis by enforcing chromatin adaptability
Guo P, Liu Y, Geng F, Daman A, Liu X, Zhong L, Ravishankar A, Lis R, Barcia Durán J, Itkin T, Tang F, Zhang T, Xiang J, Shido K, Ding B, Wen D, Josefowicz S, Rafii S. Publisher Correction: Histone variant H3.3 maintains adult haematopoietic stem cell homeostasis by enforcing chromatin adaptability. Nature Cell Biology 2022, 24: 279-279. PMID: 35058593, DOI: 10.1038/s41556-022-00851-w.Peer-Reviewed Original Research
2021
Histone variant H3.3 maintains adult haematopoietic stem cell homeostasis by enforcing chromatin adaptability
Guo P, Liu Y, Geng F, Daman A, Liu X, Zhong L, Ravishankar A, Lis R, Barcia Durán J, Itkin T, Tang F, Zhang T, Xiang J, Shido K, Ding B, Wen D, Josefowicz S, Rafii S. Histone variant H3.3 maintains adult haematopoietic stem cell homeostasis by enforcing chromatin adaptability. Nature Cell Biology 2021, 24: 99-111. PMID: 34961794, PMCID: PMC9166935, DOI: 10.1038/s41556-021-00795-7.Peer-Reviewed Original ResearchMeSH KeywordsAnimalsCD8-Positive T-LymphocytesCell Cycle ProteinsCell LineChromatinGranulocytesHematopoiesisHematopoietic Stem CellsHistone ChaperonesHistonesHuman Umbilical Vein Endothelial CellsHumansMacrophagesMethylationMiceMice, Inbred C57BLMice, KnockoutMyelopoiesisPromoter Regions, GeneticProtein Processing, Post-TranslationalTranscription FactorsConceptsHaematopoietic stem cellsInterferon regulatory factor familyH3K9me3 markHistone variantsChromatin adaptersFamily of transcription factorsLoss of H3.3Histone variant H3.3H3 histone variantLineage-specific genesPost-translational modificationsHaematopoietic stem cell homeostasisStem cell homeostasisInterferon regulatory factor family of transcription factorsBivalent genesChaperone HIRAGranulocyte-macrophage progenitorsVariant H3.3H3K27me3 markPromoter regionTranscription factorsH3.3Mammalian systemsExpression of stemnessCell homeostasisExogenous insulin-like growth factor 1 accelerates growth and maturation of follicles in human cortical xenografts and increases ovarian output in mice
Man L, Lustgarten Guahmich N, Kallinos E, Park L, Caiazza B, Khan M, Liu Z, Patel R, Torres C, Lekovich J, Zhong L, Bodine R, Wen D, Zaninovic N, Schattman G, Rosenwaks Z, James D. Exogenous insulin-like growth factor 1 accelerates growth and maturation of follicles in human cortical xenografts and increases ovarian output in mice. F&S Science 2021, 2: 237-247. PMID: 35560275, PMCID: PMC9361175, DOI: 10.1016/j.xfss.2021.07.002.Peer-Reviewed Original ResearchConceptsExogenous insulin-like growth factor-1Insulin-like growth factor-1Intraovarian injectionFollicle countGrowth factor-1Oocyte yieldAcute administrationImmunocompromised miceStage folliclesSecondary folliclesPercentage of secondary folliclesApplication of human growth hormonePercentage of primary folliclesAntral stage folliclesOvarian cortical fragmentsSecondary stage folliclesOvarian tissue cryopreservationInstitutional review board approvalFactor 1Antral follicle countMaturation of folliclesClinical applicationGluteus muscleReview board approvalInjection of salineGeneration of Sex-Reversed Female Clonal Mice via CRISPR-Cas9-Mediated Y Chromosome Deletion in Male Embryonic Stem Cells
Qin Y, Wong B, Zhong L, Geng F, Parada L, Wen D. Generation of Sex-Reversed Female Clonal Mice via CRISPR-Cas9-Mediated Y Chromosome Deletion in Male Embryonic Stem Cells. The CRISPR Journal 2021, 4: 147-154. PMID: 33567216, PMCID: PMC7898403, DOI: 10.1089/crispr.2020.0074.Peer-Reviewed Original ResearchMeSH KeywordsAnimalsCell LineChromosome DeletionChromosomes, Human, YClustered Regularly Interspaced Short Palindromic RepeatsCRISPR-Cas SystemsEmbryo, MammalianEmbryonic Stem CellsFemaleGenotyping TechniquesInfertility, MaleKaryotypingMaleMiceSex Chromosome AberrationsSex Chromosome Disorders of Sex DevelopmentY ChromosomeConceptsXO female miceCRISPR-Cas9-mediated deletionFemale miceSpontaneous Y chromosome lossTetraploid complementationY chromosome deletionsGenetically modified mouse modelsY chromosome lossEmbryonic stem (ES) cellsMale embryonic stem cellsES cell linesEmbryonic stem cellsMouse modelY chromosomeStem cellsMiceCell linesES cellsFemale offspringCells
2018
Correction: A homozygous FANCM frameshift pathogenic variant causes male infertility
Yin H, Ma H, Hussain S, Zhang H, Xie X, Jiang L, Jiang X, Iqbal F, Bukhari I, Jiang H, Ali A, Zhong L, Li T, Fan S, Zhang B, Gao J, Li Y, Nazish J, Khan T, Khan M, Zubair M, Hao Q, Fang H, Huang J, Huleihel M, Sha J, Pandita T, Zhang Y, Shi Q. Correction: A homozygous FANCM frameshift pathogenic variant causes male infertility. Genetics In Medicine 2018, 21: 266. PMID: 30158692, PMCID: PMC6752282, DOI: 10.1038/s41436-018-0127-0.Peer-Reviewed Original ResearchA homozygous FANCM frameshift pathogenic variant causes male infertility
Yin H, Ma H, Hussain S, Zhang H, Xie X, Jiang L, Jiang X, Iqbal F, Bukhari I, Jiang H, Ali A, Zhong L, Li T, Fan S, Zhang B, Gao J, Li Y, Nazish J, Khan T, Khan M, Zubair M, Hao Q, Fang H, Huang J, Huleihel M, Sha J, Pandita T, Zhang Y, Shi Q. A homozygous FANCM frameshift pathogenic variant causes male infertility. Genetics In Medicine 2018, 21: 62-70. PMID: 29895858, PMCID: PMC6752308, DOI: 10.1038/s41436-018-0015-7.Peer-Reviewed Original ResearchConceptsPathogenic variantsMale infertilityInterstrand crosslinksRound spermatid maturation arrestFanconi anemiaGerm cell lossFrameshift pathogenic variantDNA interstrand crosslinksBone marrow failurePhenotype of human patientsLymphocytes of patientsInfertile brothersSpermatogenic failurePakistani familyTesticular tubulesFANCMFirst-cousin parentsMale fertilitySanger sequencingTesticular integrityMarrow failureMaturation arrestFunctional analysisMouse modelCell loss