2012
An R package suite for microarray meta-analysis in quality control, differentially expressed gene analysis and pathway enrichment detection
Wang X, Kang DD, Shen K, Song C, Lu S, Chang LC, Liao SG, Huo Z, Tang S, Ding Y, Kaminski N, Sibille E, Lin Y, Li J, Tseng GC. An R package suite for microarray meta-analysis in quality control, differentially expressed gene analysis and pathway enrichment detection. Bioinformatics 2012, 28: 2534-2536. PMID: 22863766, PMCID: PMC3463115, DOI: 10.1093/bioinformatics/bts485.Peer-Reviewed Original ResearchMeSH KeywordsAlgorithmsComputational BiologyGene Expression ProfilingGenomicsHumansMaleMeta-Analysis as TopicMicroarray AnalysisProstatic NeoplasmsQuality ControlSoftwareConceptsDifferent operation systemsMulti-core parallel computingUser-friendly softwareParallel computingPathway detectionSoftware suiteFlexible inputFast implementationOperation systemVisualization plotsSupplementary dataNew algorithmMetapathsNew challengesSummary outputMarker detectionPathway databasesLittle effortMeta-analysis pipelineRapid advancesHigh-throughput genomic technologiesGenomic dataSystematic pipelineComputingPipeline
2011
MetaQC: objective quality control and inclusion/exclusion criteria for genomic meta-analysis
Kang DD, Sibille E, Kaminski N, Tseng GC. MetaQC: objective quality control and inclusion/exclusion criteria for genomic meta-analysis. Nucleic Acids Research 2011, 40: e15-e15. PMID: 22116060, PMCID: PMC3258120, DOI: 10.1093/nar/gkr1071.Peer-Reviewed Original Research