Bioinformatics workshop series
Session 8: Functional analysis using Gene Set Enrichment Analysis (GSEA)
Register: https://schedule.yale.edu/event/11975028
Presenter: Rolando Garcia-Milian, Bioinformatics Support Hub, CWML
Summary: Gene Set Enrichment Analysis (GSEA) (UC San Diego/Broad Institute) determines whether a set of genes shows statistically significant differences between two biological conditions (e.g., phenotypes). From this session/workshop you will learn how to run GSEA on your own datasets using the GSEA desktop application. During the session we will use a tutorial dataset that will be made available to all the registrants
You will learn how to:
- Prepare your data and files for running GSEA.
- Use the Molecular Signature Database (MSigDB).
- Run GSEA analysis and the Leading-edge analysis and results interpretation.
- Send and visualize the results using the Enrichment Map app.
This session is suitable for both beginner and intermediate users of GSEA.
Prerequisites:
- Download and install the GSEA desktop version on your laptop.
- Download and install Cytoscape software
- A tutorial dataset will be made available to all registrants.
- You may also use your HPC account to access GSEA in Yale Open OnDemand.
Speaker
- Rolando Garcia-MilanBioinformatics Support Hub, CWML
Admission
Free
Tag
Training