2021
Machine Learning-based Prediction Models for Diagnosis and Prognosis in Inflammatory Bowel Diseases: A Systematic Review
Nguyen N, Picetti D, Dulai P, Jairath V, Sandborn W, Ohno-Machado L, Chen P, Singh S. Machine Learning-based Prediction Models for Diagnosis and Prognosis in Inflammatory Bowel Diseases: A Systematic Review. Journal Of Crohn's And Colitis 2021, 16: 398-413. PMID: 34492100, PMCID: PMC8919806, DOI: 10.1093/ecco-jcc/jjab155.Peer-Reviewed Reviews, Practice Guidelines, Standards, and Consensus StatementsConceptsInflammatory bowel diseaseBowel diseaseClinical dataHigh riskRisk predictionSystematic reviewAcute severe ulcerative colitisLongitudinal disease activitySevere ulcerative colitisAdverse clinical outcomesBias assessment toolRisk of biasAvailable clinical dataMachine learning-based prediction modelsPrediction model RiskDisease activityCohort studyUlcerative colitisClinical outcomesTreatment responseClinical applicabilityLearning-based prediction modelsExternal validationPatientsRisk
2010
A potential role for intragenic miRNAs on their hosts' interactome
Hinske L, Galante P, Kuo W, Ohno-Machado L. A potential role for intragenic miRNAs on their hosts' interactome. BMC Genomics 2010, 11: 533. PMID: 20920310, PMCID: PMC3091682, DOI: 10.1186/1471-2164-11-533.Peer-Reviewed Original ResearchConceptsIntragenic miRNAsHost genesAdenylate/uridylate-rich elementsMiRNA targetsMRNA targetsHost interactomeGene cohortsMiRNA biogenesis pathwayNon-coding RNA moleculesHigh-confidence setMiRNA target genesProtein-coding regionsKEGG pathway analysisTight regulatory controlNegative feedback regulatorIntronic miRNAsMore intronsBiogenesis pathwayMiRNA genesNegative feedback loopUridylate-rich elementsCellular homeostasisTarget genesRNA moleculesInteractome
2002
Comparing imperfect measurements with the Bland-Altman technique: application in gene expression analysis.
Ohno-Machado L, Vinterbo S, Dreiseitl S, Jenssen T, Kuo W. Comparing imperfect measurements with the Bland-Altman technique: application in gene expression analysis. AMIA Annual Symposium Proceedings 2002, 572-6. PMID: 12463888, PMCID: PMC2244491.Peer-Reviewed Original Research