2010
The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models
Shi L, Campbell G, Jones W, Campagne F, Wen Z, Walker S, Su Z, Chu T, Goodsaid F, Pusztai L, Shaughnessy J, Oberthuer A, Thomas R, Paules R, Fielden M, Barlogie B, Chen W, Du P, Fischer M, Furlanello C, Gallas B, Ge X, Megherbi D, Symmans W, Wang M, Zhang J, Bitter H, Brors B, Bushel P, Bylesjo M, Chen M, Cheng J, Cheng J, Chou J, Davison T, Delorenzi M, Deng Y, Devanarayan V, Dix D, Dopazo J, Dorff K, Elloumi F, Fan J, Fan S, Fan X, Fang H, Gonzaludo N, Hess K, Hong H, Huan J, Irizarry R, Judson R, Juraeva D, Lababidi S, Lambert C, Li L, Li Y, Li Z, Lin S, Liu G, Lobenhofer E, Luo J, Luo W, McCall M, Nikolsky Y, Pennello G, Perkins R, Philip R, Popovici V, Price N, Qian F, Scherer A, Shi T, Shi W, Sung J, Thierry-Mieg D, Thierry-Mieg J, Thodima V, Trygg J, Vishnuvajjala L, Wang S, Wu J, Wu Y, Xie Q, Yousef W, Zhang L, Zhang X, Zhong S, Zhou Y, Zhu S, Arasappan D, Bao W, Lucas A, Berthold F, Brennan R, Buness A, Catalano J, Chang C, Chen R, Cheng Y, Cui J, Czika W, Demichelis F, Deng X, Dosymbekov D, Eils R, Feng Y, Fostel J, Fulmer-Smentek S, Fuscoe J, Gatto L, Ge W, Goldstein D, Guo L, Halbert D, Han J, Harris S, Hatzis C, Herman D, Huang J, Jensen R, Jiang R, Johnson C, Jurman G, Kahlert Y, Khuder S, Kohl M, Li J, Li L, Li M, Li Q, Li S, Li Z, Liu J, Liu Y, Liu Z, Meng L, Madera M, Martinez-Murillo F, Medina I, Meehan J, Miclaus K, Moffitt R, Montaner D, Mukherjee P, Mulligan G, Neville P, Nikolskaya T, Ning B, Page G, Parker J, Parry R, Peng X, Peterson R, Phan J, Quanz B, Ren Y, Riccadonna S, Roter A, Samuelson F, Schumacher M, Shambaugh J, Shi Q, Shippy R, Si S, Smalter A, Sotiriou C, Soukup M, Staedtler F, Steiner G, Stokes T, Sun Q, Tan P, Tang R, Tezak Z, Thorn B, Tsyganova M, Turpaz Y, Vega S, Visintainer R, von Frese J, Wang C, Wang E, Wang J, Wang W, Westermann F, Willey J, Woods M, Wu S, Xiao N, Xu J, Xu L, Yang L, Zeng X, Zhang J, Zhang L, Zhang M, Zhao C, Puri R, Scherf U, Tong W, Wolfinger R. The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models. Nature Biotechnology 2010, 28: 827-838. PMID: 20676074, PMCID: PMC3315840, DOI: 10.1038/nbt.1665.Peer-Reviewed Original Research
2006
The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements
Shi L, Shi L, Reid L, Jones W, Shippy R, Warrington J, Baker S, Collins P, de Longueville F, Kawasaki E, Lee K, Luo Y, Sun Y, Willey J, Setterquist R, Fischer G, Tong W, Dragan Y, Dix D, Frueh F, Goodsaid F, Herman D, Jensen R, Johnson C, Lobenhofer E, Puri R, Scherf U, Thierry-Mieg J, Wang C, Wilson M, Wolber P, Zhang L, Amur S, Bao W, Barbacioru C, Lucas A, Bertholet V, Boysen C, Bromley B, Brown D, Brunner A, Canales R, Cao X, Cebula T, Chen J, Cheng J, Chu T, Chudin E, Corson J, Corton J, Croner L, Davies C, Davison T, Delenstarr G, Deng X, Dorris D, Eklund A, Fan X, Fang H, Fulmer-Smentek S, Fuscoe J, Gallagher K, Ge W, Guo L, Guo X, Hager J, Haje P, Han J, Han T, Harbottle H, Harris S, Hatchwell E, Hauser C, Hester S, Hong H, Hurban P, Jackson S, Ji H, Knight C, Kuo W, LeClerc J, Levy S, Li Q, Liu C, Liu Y, Lombardi M, Ma Y, Magnuson S, Maqsodi B, McDaniel T, Mei N, Myklebost O, Ning B, Novoradovskaya N, Orr M, Osborn T, Papallo A, Patterson T, Perkins R, Peters E, Peterson R, Philips K, Pine P, Pusztai L, Qian F, Ren H, Rosen M, Rosenzweig B, Samaha R, Schena M, Schroth G, Shchegrova S, Smith D, Staedtler F, Su Z, Sun H, Szallasi Z, Tezak Z, Thierry-Mieg D, Thompson K, Tikhonova I, Turpaz Y, Vallanat B, Van C, Walker S, Wang S, Wang Y, Wolfinger R, Wong A, Wu J, Xiao C, Xie Q, Xu J, Yang W, Zhang L, Zhong S, Zong Y, Slikker W. The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements. Nature Biotechnology 2006, 24: 1151-1161. PMID: 16964229, PMCID: PMC3272078, DOI: 10.1038/nbt1239.Peer-Reviewed Original ResearchConceptsMicroArray Quality ControlIntroduction of microarray technologyMicroArray Quality Control projectRNA samplesGene expression measurementsGene expression researchMicroarray-basedMicroarray platformExpression dataMicroarray technologyExpression measurementsMicroarrayExpression researchIntraplatformMapping effortsGenesRNAAlternative technology platformsQuality controlData analysis issuesSitesPublication of studiesMultiple test sitesExpression