2015
Diffusion Component Analysis: Unraveling Functional Topology in Biological Networks
Cho H, Berger B, Peng J. Diffusion Component Analysis: Unraveling Functional Topology in Biological Networks. Lecture Notes In Computer Science 2015, 9029: 62-64. PMID: 28748230, PMCID: PMC5524124, DOI: 10.1007/978-3-319-16706-0_9.Peer-Reviewed Original Research
2014
High-Resolution Transcriptome Analysis with Long-Read RNA Sequencing
Cho H, Davis J, Li X, Smith K, Battle A, Montgomery S. High-Resolution Transcriptome Analysis with Long-Read RNA Sequencing. PLOS ONE 2014, 9: e108095. PMID: 25251678, PMCID: PMC4176000, DOI: 10.1371/journal.pone.0108095.Peer-Reviewed Original ResearchConceptsAllele-specific expressionTranscriptome analysisRNA sequencingAlternative splicing patternsCell line GM12878RNA-seq protocolsSequencing of cDNARNA-seq datasetsIndividual transcriptomesGenomic elementsAlternative splicingSplicing patternsAllelic expressionTranscript quantificationRead lengthMRNA transcriptsMapping biasSequencingExpressionTranscriptomeGM12878SplicingTechnical hurdlesCDNAGenes