2020
Using sigLASSO to optimize cancer mutation signatures jointly with sampling likelihood
Li S, Crawford FW, Gerstein MB. Using sigLASSO to optimize cancer mutation signatures jointly with sampling likelihood. Nature Communications 2020, 11: 3575. PMID: 32681003, PMCID: PMC7368050, DOI: 10.1038/s41467-020-17388-x.Peer-Reviewed Original Research
2014
On the distribution of interspecies correlation for Markov models of character evolution on Yule trees
Mulder WH, Crawford FW. On the distribution of interspecies correlation for Markov models of character evolution on Yule trees. Journal Of Theoretical Biology 2014, 364: 275-283. PMID: 25240905, PMCID: PMC4256168, DOI: 10.1016/j.jtbi.2014.09.016.Peer-Reviewed Original ResearchConceptsPhylogenetic treeYule treeProbability distributionPhylogenetic information contentContinuous-time modelPhylogenetic inference methodsOrnstein-Uhlenbeck modelCharacter evolutionPhylogenetic studiesNumber of mutationsTrait patternsRelated organismsStochastic modelNew speciesSimple continuous-time modelBrownian motionYule processEvolutionary processesPhenotypic changesMutation modelInference methodsSite patternsOptimal designSpeciationMutations