2025
cSTAR analysis identifies endothelial cell cycle as a key regulator of flow-dependent artery remodeling
Deng H, Rukhlenko O, Joshi D, Hu X, Junk P, Tuliakova A, Kholodenko B, Schwartz M. cSTAR analysis identifies endothelial cell cycle as a key regulator of flow-dependent artery remodeling. Science Advances 2025, 11: eado9970. PMID: 39752487, PMCID: PMC11698091, DOI: 10.1126/sciadv.ado9970.Peer-Reviewed Original Research
2006
Quantifying gene network connectivity in silico: scalability and accuracy of a modular approach.
Yalamanchili N, Zak D, Ogunnaike B, Schwaber J, Kriete A, Kholodenko B. Quantifying gene network connectivity in silico: scalability and accuracy of a modular approach. IET Systems Biology 2006, 153: 236-46. PMID: 16986625, PMCID: PMC2346590, DOI: 10.1049/ip-syb:20050090.Peer-Reviewed Original Research
2004
Inferring dynamic architecture of cellular networks using time series of gene expression, protein and metabolite data
Sontag E, Kiyatkin A, Kholodenko BN. Inferring dynamic architecture of cellular networks using time series of gene expression, protein and metabolite data. Bioinformatics 2004, 20: 1877-1886. PMID: 15037511, DOI: 10.1093/bioinformatics/bth173.Peer-Reviewed Original Research