Ma Lab Publications

Kim C, Gao YT, Xiang YB, Barone-Adesi F, Zhang Y, Hosgood HD, Ma S, Shu XO, Ji BT, Chow WH, Seow WJ, Bassig B, Cai Q, Zheng W, Rothman N and Lan Q: Home kitchen ventilation, cooking fuels, and lung cancer risk in a prospective cohort of never smoking women in Shanghai, China. Int J Cancer. 2015 Feb 15;136 (3) :632-8. Epub 2014 Jun 28. PMID: 24917360

Wu C, Cui Y and Ma S: Integrative analysis of gene-environment interactions under a multi-response partially linear varying coefficient model. Stat Med. 2014 Dec 10;33 (28) :4988-98. Epub 2014 Aug 21. PMID: 25146388


Wang Y and Ma S: Racial differences in mantle cell lymphoma in the United States. BMC Cancer. 2014 Oct 15;14 :764. Epub 2014 Oct 15. PMID: 25315847


Zhu R, Zhao H and Ma S: Identifying gene-environment and gene-gene interactions using a progressive penalization approach. Genet Epidemiol. 2014 May;38 (4) :353-68. Epub 2014 Apr 10. PMID: 24723356


Shi X, Liu J, Huang J, Zhou Y, Xie Y and Ma S: A penalized robust method for identifying gene-environment interactions. Genet Epidemiol. 2014 Apr;38 (3) :220-30. Epub 2014 Feb 24. PMID: 24616063


Kim C, Chapman RS, Hu W, He X, Hosgood HD, Liu LZ, Lai H, Chen W, Silverman DT, Vermeulen R, Tian L, Bassig B, Shen M, Zhang Y, Ma S, Rothman N and Lan Q: Smoky coal, tobacco smoking, and lung cancer risk in Xuanwei, China. Lung Cancer. 2014 Apr;84 (1) :31-5. Epub 2014 Jan 11. PMID: 24506909


Liu J, Huang J and Ma S: Integrative Analysis of Cancer Diagnosis Studies with Composite Penalization. Scand Stat Theory Appl. 2014 Mar 1;41 (1) :87-103. PMID: 24578589


Xiao G, Ma S, Minna J and Xie Y: Adaptive prediction model in prospective molecular signature-based clinical studies. Clin Cancer Res. 2014 Feb 1;20 (3) :531-9. Epub 2013 Dec 9. PMID: 24323903


Shi X, Liu J, Huang J, Zhou Y, Shia B and Ma S: Integrative analysis of high-throughput cancer studies with contrasted penalization. Genet Epidemiol. 2014 Feb;38 (2) :144-51. Epub 2014 Jan 6. PMID: 24395534


Liu J, Huang J and Ma S: Penalized multivariate linear mixed model for longitudinal genome-wide association studies. BMC Proc. 2014;8 (Suppl 1) :S73. Epub 2014 Jun 17. PMID: 25519343


Dai L, Deng C, Li Y, Zhu J, Mu Y, Deng Y, Mao M, Wang Y, Li Q, Ma S, Ma X and Zhang Y: Birth weight reference percentiles for Chinese. PLoS One. 2014;9 (8) :e104779. Epub 2014 Aug 15. PMID: 25127131

Wang Y, Zhang Y and Ma S: Racial differences in nasopharyngeal carcinoma in the United States. Cancer Epidemiol. 2013 Dec;37 (6) :793-802. Epub 2013 Sep 12. PMID: 24035238


Liu J, Huang J and Ma S: Integrative analysis of multiple cancer genomic datasets under the heterogeneity model. Stat Med. 2013 Sep 10;32 (20) :3509-21. Epub 2013 Mar 21. PMID: 23519988


Chen Y, Zheng T, Lan Q, Kim C, Qin Q, Foss F, Chen X, Holford T, Leaderer B, Boyle P, Wang C, Dai M, Liu Z, Ma S, Chanock SJ, Rothman N and Zhang Y: Polymorphisms in DNA repair pathway genes, body mass index, and risk of non-Hodgkin lymphoma. Am J Hematol. 2013 Jul;88 (7) :606-11. Epub 2013 May 30. PMID: 23619945


Kim C, Bi X, Pan D, Chen Y, Carling T, Ma S, Udelsman R and Zhang Y: The risk of second cancers after diagnosis of primary thyroid cancer is elevated in thyroid microcarcinomas. Thyroid. 2013 May;23 (5) :575-82. Epub 2013 Apr 18. PMID: 23237308


Liu J, Huang J, Ma S and Wang K: Incorporating group correlations in genome-wide association studies using smoothed group Lasso. Biostatistics. 2013 Apr;14 (2) :205-19. Epub 2012 Sep 17. PMID: 22988281


Liu J, Huang J and Ma S: Incorporating network structure in integrative analysis of cancer prognosis data. Genet Epidemiol. 2013 Feb;37 (2) :173-83. Epub 2012 Nov 17. PMID: 23161517


Moran MS, Ma S, Jagsi R, Yang TJ, Higgins SA, Weidhaas JB, Wilson LD, Lloyd S, Peschel R, Gaudreau B and Rockwell S: A prospective, multicenter study of complementary/alternative medicine (CAM) utilization during definitive radiation for breast cancer. Int J Radiat Oncol Biol Phys. 2013 Jan 1;85 (1) :40-6. Epub 2012 Jun 1. PMID: 22658441


Wang Y, Jiang Y, Li Y, Wang X, Ma C and Ma S: Health insurance utilization and its impact: observations from the middle-aged and elderly in China. PLoS One. 2013;8 (12) :e80978. Epub 2013 Dec 6. PMID: 24324654


Liu J, Wang K, Ma S and Huang J: Accounting for linkage disequilibrium in genome-wide association studies: A penalized regression method. Stat Interface. 2013 Jan 1;6 (1) :99-115. PMID: 25258655

Ma S, Zhang Y, Huang J, Huang Y, Lan Q, Rothman N and Zheng T: Integrative analysis of cancer prognosis data with multiple subtypes using regularized gradient descent. Genet Epidemiol. 2012 Dec;36 (8) :829-38. Epub 2012 Jul 31. PMID: 22851516


Ma S, Dai Y, Huang J and Xie Y: Identification of Breast Cancer Prognosis Markers via Integrative Analysis. Comput Stat Data Anal. 2012 Sep 1;56 (9) :2718-2728. PMID: 22773869


Krauthammer M, Kong Y, Ha BH, Evans P, Bacchiocchi A, McCusker JP, Cheng E, Davis MJ, Goh G, Choi M, Ariyan S, Narayan D, Dutton-Regester K, Capatana A, Holman EC, Bosenberg M, Sznol M, Kluger HM, Brash DE, Stern DF, Materin MA, Lo RS, Mane S, Ma S, Kidd KK, Hayward NK, Lifton RP, Schlessinger J, Boggon TJ and Halaban R: Exome sequencing identifies recurrent somatic RAC1 mutations in melanoma. Nat Genet. 2012 Sep;44 (9) :1006-14. Epub 2012 Jul 29. PMID: 22842228


Nguyen KT, Khuat OT, Ma S, Pham DC, Khuat GT and Ruger JP: Impact of health insurance on health care treatment and cost in Vietnam: a health capability approach to financial protection. Am J Public Health. 2012 Aug;102 (8) :1450-61. Epub 2012 Jun 14. PMID: 22698046


Ma S, Huang Y, Huang J and Fang K: Gene network-based cancer prognosis analysis with sparse boosting. Genet Res (Camb). 2012 Aug;94 (4) :205-21. PMID: 22950901


Ma S: Risk Factors of Follicular Lymphoma. Expert Opin Med Diagn. 2012 Jul 1;6 (4) :323-333. Epub 2012 May 8. PMID: 22754588


Kim C, McGlynn KA, McCorkle R, Li Y, Erickson RL, Ma S, Niebuhr DW, Zhang G, Zhang Y, Bai Y, Dai L, Graubard BI, Zheng T, Aschebrook-Kilfoy B, Barry KH and Zhang Y: Sexual functioning among testicular cancer survivors: a case-control study in the U.S. J Psychosom Res. 2012 Jul;73 (1) :68-73. Epub 2012 Apr 21. PMID: 22691563


Ma S and Du P: VARIABLE SELECTION IN PARTLY LINEAR REGRESSION MODEL WITH DIVERGING DIMENSIONS FOR RIGHT CENSORED DATA. Stat Sin. 2012 Jul 1;22 (3) :1003-1020. PMID: 23956611


Dai Y and Ma S: Variable selection for semiparametric regression models with iterated penalization. J Nonparametr Stat. 2012 Jun 1;24 (2) :283-298. Epub 2012 Apr 30. PMID: 22685376


Aschebrook-Kilfoy B, Zheng T, Foss F, Ma S, Han X, Lan Q, Holford T, Chen Y, Leaderer B, Rothman N and Zhang Y: Polymorphisms in immune function genes and non-Hodgkin lymphoma survival. J Cancer Surviv. 2012 Mar;6 (1) :102-14. Epub 2011 Nov 24. PMID: 22113576


Nguyen KT, Khuat OT, Ma S, Pham DC, Khuat GT and Ruger JP: Coping with health care expenses among poor households: evidence from a rural commune in Vietnam. Soc Sci Med. 2012 Mar;74 (5) :724-33. Epub 2011 Dec 2. PMID: 22305805


Liu J, Huang J and Ma S: Analysis of genome-wide association studies with multiple outcomes using penalization. PLoS One. 2012;7 (12) :e51198. Epub 2012 Dec 14. PMID: 23272092


Nguyen KT, Khuat OT, Ma S, Pham DC, Khuat GT and Ruger JP: Effect of health expenses on household capabilities and resource allocation in a rural commune in Vietnam. PLoS One. 2012;7 (10) :e47423. Epub 2012 Oct 15. PMID: 23077612

Ma S, Huang J, Wei F, Xie Y and Fang K: Integrative analysis of multiple cancer prognosis studies with gene expression measurements. Stat Med. 2011 Dec 10;30 (28) :3361-71. Epub 2011 Aug 25. PMID: 22105693


Kim C, McGlynn KA, McCorkle R, Erickson RL, Niebuhr DW, Ma S, Graubard B, Aschebrook-Kilfoy B, Barry KH and Zhang Y: Quality of life among testicular cancer survivors: a case-control study in the United States. Qual Life Res. 2011 Dec;20 (10) :1629-37. Epub 2011 Apr 17. PMID: 21499930


Ma S and Dai Y: Principal component analysis based methods in bioinformatics studies. Brief Bioinform. 2011 Nov;12 (6) :714-22. Epub 2011 Jan 17. PMID: 21242203


Zhang Y, Dai Y, Zheng T and Ma S: Risk Factors of Non-Hodgkin Lymphoma. Expert Opin Med Diagn. 2011 Nov 1;5 (6) :539-550. PMID: 22059093


Ma S, Huang J and Song X: Integrative analysis and variable selection with multiple high-dimensional data sets. Biostatistics. 2011 Oct;12 (4) :763-75. Epub 2011 Mar 16. PMID: 21415015


Moran MS, Gonsalves L, Goss DM and Ma S: Breast cancers in U.S. residing Indian-Pakistani versus non-Hispanic White women: comparative analysis of clinical-pathologic features, treatment, and survival. Breast Cancer Res Treat. 2011 Jul;128 (2) :543-51. Epub 2011 Feb 8. PMID: 21301957


Ma S, Kosorok MR, Huang J and Dai Y: Incorporating higher-order representative features improves prediction in network-based cancer prognosis analysis. BMC Med Genomics. 2011 Jan 12;4 :5. Epub 2011 Jan 12. PMID: 21226928


Ma S and Song X: Ranking prognosis markers in cancer genomic studies. Brief Bioinform. 2011 Jan;12 (1) :33-40. Epub 2010 Nov 18. PMID: 21087949

Kim C, McGlynn KA, McCorkle R, Zheng T, Erickson RL, Niebuhr DW, Ma S, Zhang Y, Bai Y, Dai L, Graubard BI, Kilfoy B, Barry KH and Zhang Y: Fertility among testicular cancer survivors: a case-control study in the U.S. J Cancer Surviv. 2010 Sep;4 (3) :266-73. Epub 2010 Jun 23. PMID: 20571931


Ma S, Liu A, Carr J, Post W and Kronmal R: Statistical modeling of Agatston score in multi-ethnic study of atherosclerosis (MESA). PLoS One. 2010 Aug 9;5 (8) :e12036. Epub 2010 Aug 9. PMID: 20711503


Ma S, Huang J, Shi M, Li Y and Shia BC: Semiparametric prognosis models in genomic studies. Brief Bioinform. 2010 Jul;11 (4) :385-93. Epub 2010 Feb 1. PMID: 20123942


Han X, Zheng T, Foss FM, Ma S, Holford TR, Boyle P, Leaderer B, Zhao P, Dai M and Zhang Y: Alcohol consumption and non-Hodgkin lymphoma survival. J Cancer Surviv. 2010 Jun;4 (2) :101-9. Epub 2009 Dec 29. PMID: 20039144


Han X, Zheng T, Foss F, Holford TR, Ma S, Zhao P, Dai M, Kim C, Zhang Y, Bai Y and Zhang Y: Vegetable and fruit intake and non-Hodgkin lymphoma survival in Connecticut women. Leuk Lymphoma. 2010 Jun;51 (6) :1047-54. PMID: 20350273


Ma S, Shi M, Li Y, Yi D and Shia BC: Incorporating gene co-expression network in identification of cancer prognosis markers. BMC Bioinformatics. 2010 May 20;11 :271. Epub 2010 May 20. PMID: 20487548


Rubinstein JC, Tran N, Ma S, Halaban R and Krauthammer M: Genome-wide methylation and expression profiling identifies promoter characteristics affecting demethylation-induced gene up-regulation in melanoma. BMC Med Genomics. 2010 Feb 9;3 :4. Epub 2010 Feb 9. PMID: 20144234


Han X, Zheng T, Foss FM, Lan Q, Holford TR, Rothman N, Ma S and Zhang Y: Genetic polymorphisms in the metabolic pathway and non-Hodgkin lymphoma survival. Am J Hematol. 2010 Jan;85 (1) :51-6. PMID: 20029944


Ma S, Zhang Y, Huang J, Han X, Holford T, Lan Q, Rothman N, Boyle P and Zheng T: Identification of non-Hodgkin's lymphoma prognosis signatures using the CTGDR method. Bioinformatics. 2010 Jan 1;26 (1) :15-21. Epub 2009 Oct 22. PMID: 19850755


Ma S and Kosorok MR: Detection of gene pathways with predictive power for breast cancer prognosis. BMC Bioinformatics. 2010 Jan 1;11 :1. Epub 2010 Jan 1. PMID: 20043860

Ma S, Huang J and Moran MS: Identification of genes associated with multiple cancers via integrative analysis. BMC Genomics. 2009 Nov 17;10 :535. Epub 2009 Nov 17. PMID: 19919702


Tran N, Alves P, Ma S and Krauthammer M: Enriching PubMed related article search with sentence level co-citations. AMIA Annu Symp Proc. 2009 Nov 14;2009 :650-4. Epub 2009 Nov 14. PMID: 20351935


Zhu C, Zheng T, Kilfoy BA, Han X, Ma S, Ba Y, Bai Y, Wang R, Zhu Y and Zhang Y: A birth cohort analysis of the incidence of papillary thyroid cancer in the United States, 1973-2004. Thyroid. 2009 Oct;19 (10) :1061-6. PMID: 19732011


Ma S and Kosorok MR: Identification of differential gene pathways with principal component analysis. Bioinformatics. 2009 Apr 1;25 (7) :882-9. Epub 2009 Feb 17. PMID: 19223452


Ma S and Huang J: Regularized gene selection in cancer microarray meta-analysis. BMC Bioinformatics. 2009 Jan 1;10 :1. Epub 2009 Jan 1. PMID: 19118496


Ma S, Huang J and Shen S: Identification of cancer-associated gene clusters and genes via clustering penalization. Stat Interface. 2009 Jan 1;2 (1) :1-11. PMID: 20057914

Ma S and Huang J: Penalized feature selection and classification in bioinformatics. Brief Bioinform. 2008 Sep;9 (5) :392-403. Epub 2008 Jun 18. PMID: 18562478

Ma S and Huang J: Combining clinical and genomic covariates via Cov-TGDR. Cancer Inform. 2007 Oct 15;3 :371-8. Epub 2007 Oct 15. PMID: 19455255


Ma S and Huang J: Combining multiple markers for classification using ROC. Biometrics. 2007 Sep;63 (3) :751-7. PMID: 17825007


Ma S and Huang J: Additive risk survival model with microarray data. BMC Bioinformatics. 2007 Jun 8;8 :192. Epub 2007 Jun 8. PMID: 17559667


Ma S, Song X and Huang J: Supervised group Lasso with applications to microarray data analysis. BMC Bioinformatics. 2007 Feb 22;8 :60. Epub 2007 Feb 22. PMID: 17316436


Ma S and Huang J: Clustering threshold gradient descent regularization: with applications to microarray studies. Bioinformatics. 2007 Feb 15;23 (4) :466-72. Epub 2006 Dec 20. PMID: 17182700

Ma S: Empirical study of supervised gene screening. BMC Bioinformatics. 2006 Dec 18;7 :537. Epub 2006 Dec 18. PMID: 17176468