Perry Miller, PhD, MD

• Andrea Benin
• Cynthia Brandt
• Daniel Zelterman
• Haseena Rajeevan
• Joel Gelernter
• Jon Morrow
• Kenneth Kidd
• Lawrence Staib
• Lynn Cooley
• Michael Hines
• Pradeep Mutalik
• Prakash Nadkarni
• Robert McDougal
• Seth Powsner
• Stanley Rosenbaum

Anesthesiology; Information Science; Medical Informatics; Informatics

• SenseLab: Integration of Multidisciplinary Neuroscience DataShepherd G, Morse T, Marenco L, Cheung K, Carnevale T, Migliore M, McDougal R, Hines M, Miller P. SenseLab: Integration of Multidisciplinary Neuroscience Data. 2022, 3069-3072. DOI: 10.1007/978-1-0716-1006-0_497.
• Laplacian SVM Based Feature Selection Improves Medical Event Reports ClassificationFodeh S, Miller P, Brandt C, Benin A, Lee K, Koss M. Laplacian SVM Based Feature Selection Improves Medical Event Reports Classification. 2015, 449-454. DOI: 10.1109/icdmw.2015.141.
• SenseLab: Integration of Multidisciplinary Neuroscience DataShepherd G, Morse T, Marenco L, Cheung K, Carnevale T, Migliore M, McDougal R, Hines M, Miller P. SenseLab: Integration of Multidisciplinary Neuroscience Data. 2015, 2655-2657. DOI: 10.1007/978-1-4614-6675-8_497.
• Decision Support and Expert Systems in Public HealthYasnoff W, Miller P. Decision Support and Expert Systems in Public Health. 2013, 449-467. DOI: 10.1007/978-1-4471-4237-9_23.
• SenseLab: Integration of Multidisciplinary Neuroscience DataShepherd G, Morse T, Marenco L, Cheung K, Carnevale T, Migliore M, McDougal R, Hines M, Miller P. SenseLab: Integration of Multidisciplinary Neuroscience Data. 2013, 1-3. DOI: 10.1007/978-1-4614-7320-6_497-1.
• Issues in the Design of a Pilot Concept-Based Query Interface for the Neuroinformatics Information FrameworkMarenco L, Li Y, Martone ME, Sternberg PW, Shepherd GM, Miller PL. Issues in the Design of a Pilot Concept-Based Query Interface for the Neuroinformatics Information Framework. Neuroinformatics 2008, 6: 229-239. PMID: 18953674, PMCID: PMC2664632, DOI: 10.1007/s12021-008-9035-9.
• P1‐141: Modeling the “dendritic hypothesis” of Alzheimer pathogenesis: A neuroinformatics approach for elucidating part of the amyloid beta cascadeMorse T, Mutalik P, Cheung K, Miller P, Shepherd G. P1‐141: Modeling the “dendritic hypothesis” of Alzheimer pathogenesis: A neuroinformatics approach for elucidating part of the amyloid beta cascade. Alzheimer's & Dementia 2008, 4: t248-t248. DOI: 10.1016/j.jalz.2008.05.728.
• YPED: A Web-Accessible Database System for Protein Expression AnalysisShifman MA, Li Y, Colangelo CM, Stone KL, Wu TL, Cheung KH, Miller PL, Williams KR. YPED: A Web-Accessible Database System for Protein Expression Analysis. Journal Of Proteome Research 2007, 6: 4019-4024. PMID: 17867667, PMCID: PMC3863627, DOI: 10.1021/pr070325f.
• The DART classification of unannotated transcription within the ENCODE regions: Associating transcription with known and novel lociRozowsky JS, Newburger D, Sayward F, Wu J, Jordan G, Korbel JO, Nagalakshmi U, Yang J, Zheng D, Guigó R, Gingeras TR, Weissman S, Miller P, Snyder M, Gerstein MB. The DART classification of unannotated transcription within the ENCODE regions: Associating transcription with known and novel loci. Genome Research 2007, 17: 732-745. PMID: 17567993, PMCID: PMC1891334, DOI: 10.1101/gr.5696007.
• Evidence for association between multiple complement pathway genes and AMDDinu V, Miller PL, Zhao H. Evidence for association between multiple complement pathway genes and AMD. Genetic Epidemiology 2007, 31: 224-237. PMID: 17266113, DOI: 10.1002/gepi.20204.
• Dynamic Tables: An Architecture for Managing Evolving, Heterogeneous Biomedical Data in Relational Database Management SystemsCorwin J, Silberschatz A, Miller PL, Marenco L. Dynamic Tables: An Architecture for Managing Evolving, Heterogeneous Biomedical Data in Relational Database Management Systems. Journal Of The American Medical Informatics Association 2006, 14: 86-93. PMID: 17068350, PMCID: PMC2215074, DOI: 10.1197/jamia.m2189.
• An interdepartmental Ph.D. program in computational biology and bioinformatics: The Yale perspectiveGerstein M, Greenbaum D, Cheung K, Miller PL. An interdepartmental Ph.D. program in computational biology and bioinformatics: The Yale perspective. Journal Of Biomedical Informatics 2006, 40: 73-79. PMID: 16650809, DOI: 10.1016/j.jbi.2006.02.008.
• Design Issues in Implementing a Portable Sample Tracking and Analysis Research Support (STARS) System for PCR Based Microarray ResearchSayward F, Yang J, Nelson F, Euskirchen G, Urban A, Bertone P, Rinn J, Weissman S, Gerstein M, Snyder M, Miller P. Design Issues in Implementing a Portable Sample Tracking and Analysis Research Support (STARS) System for PCR Based Microarray Research. 2006, 1578-1598. DOI: 10.1109/ciss.2006.286390.
• ALFRED: An Allele Frequency Database for Microevolutionary StudiesRajeevan H, Cheung K, Gadagkar R, Stein S, Soundararajan U, Kidd J, Pakstis A, Miller P, Kidd K. ALFRED: An Allele Frequency Database for Microevolutionary Studies. Evolutionary Bioinformatics 2005, 1: 117693430500100006. DOI: 10.1177/117693430500100006.
• Training the Next Generation of Informaticians: The Impact of “BISTI” and Bioinformatics—A Report from the American College of Medical InformaticsFriedman CP, Altman RB, Kohane IS, McCormick KA, Miller PL, Ozbolt JG, Shortliffe EH, Stormo GD, Szczepaniak MC, Tuck D, Williamson J. Training the Next Generation of Informaticians: The Impact of “BISTI” and Bioinformatics—A Report from the American College of Medical Informatics. Journal Of The American Medical Informatics Association 2004, 11: 167-172. PMID: 14764617, PMCID: PMC400513, DOI: 10.1197/jamia.m1520.
• Workshop I – Global Analysis of Protein Activities Using Protein ChipsZhu H, Bilgin M, Ptacek J, Hall D, Casamayor A, Bertone P, Lopez N, Lan N, Jansen R, Bidlingmaier S, Devgan G, Miller P, Gerstein M, Snyder M. Workshop I – Global Analysis of Protein Activities Using Protein Chips. Biophysical Journal 2003, 84: 3488. DOI: 10.1016/s0006-3495(03)70069-1.
• Decision Support and Expert Systems in Public HealthYasnoff W, Miller P. Decision Support and Expert Systems in Public Health. 2003, 494-512. DOI: 10.1007/0-387-22745-8_23.
• Senselab: Modeling Heterogenous Data on the Nervous SystemNadkarni P, Mirsky J, Skoufos E, Healy M, Hines M, Miller P, Shepherd G. Senselab: Modeling Heterogenous Data on the Nervous System. 2002, 105-118. DOI: 10.1007/0-306-46903-0_10.
• Global Analysis of Protein Activities Using Proteome ChipsZhu H, Bilgin M, Bangham R, Hall D, Casamayor A, Bertone P, Lan N, Jansen R, Bidlingmaier S, Houfek T, Mitchell T, Miller P, Dean R, Gerstein M, Snyder M. Global Analysis of Protein Activities Using Proteome Chips. Science 2001, 293: 2101-2105. PMID: 11474067, DOI: 10.1126/science.1062191.
• Maintaining and Incrementally Revalidating a Computer-Based Clinical Guideline: A Case StudyMiller P, Frawley S, Sayward F. Maintaining and Incrementally Revalidating a Computer-Based Clinical Guideline: A Case Study. Journal Of Biomedical Informatics 2001, 34: 99-111. PMID: 11515416, DOI: 10.1006/jbin.2001.1011.
• Domain-constrained Generation of Clinical Condition Sets to Help Test Computer-based Clinical GuidelinesMiller P. Domain-constrained Generation of Clinical Condition Sets to Help Test Computer-based Clinical Guidelines. Journal Of The American Medical Informatics Association 2001, 8: 131-145. PMID: 11230382, PMCID: PMC134553, DOI: 10.1136/jamia.2001.0080131.
• Exploring the Utility of Demographic Data and Vaccination History Data in the Deduplication of Immunization Registry Patient RecordsMiller P, Frawley S, Sayward F. Exploring the Utility of Demographic Data and Vaccination History Data in the Deduplication of Immunization Registry Patient Records. Journal Of Biomedical Informatics 2001, 34: 37-50. PMID: 11376541, DOI: 10.1006/jbin.2001.1001.
• Integration of Multidisciplinary Sensory DataA Pilot Model of the Human Brain Project ApproachMiller P, Nadkarni P, Singer M, Marenco L, Hines M, Shepherd G. Integration of Multidisciplinary Sensory DataA Pilot Model of the Human Brain Project Approach. Journal Of The American Medical Informatics Association 2001, 8: 34-48. PMID: 11141511, PMCID: PMC134590, DOI: 10.1136/jamia.2001.0080034.
• An XML application for genomic data interoperationCheung K, Liu Y, Kumar A, Snyder M, Gerstein M, Miller P. An XML application for genomic data interoperation. 2001, 97-103. DOI: 10.1109/bibe.2001.974417.
• Reengineering a Database for Clinical Trials Management Lessons for System ArchitectsBrandt C, Nadkarni P, Marenco L, Karras B, Lu C, Schacter L, Fisk J, Miller P. Reengineering a Database for Clinical Trials Management Lessons for System Architects. Contemporary Clinical Trials 2000, 21: 440-461. PMID: 11018562, DOI: 10.1016/s0197-2456(00)00070-2.
• Exploring Performance Issues for a Clinical Database Organized Using an Entity-Attribute-Value RepresentationChen R, Nadkarni P, Marenco L, Levin F, Erdos J, Miller P. Exploring Performance Issues for a Clinical Database Organized Using an Entity-Attribute-Value Representation. Journal Of The American Medical Informatics Association 2000, 7: 475-487. PMID: 10984467, PMCID: PMC79043, DOI: 10.1136/jamia.2000.0070475.
• Opportunities at the Intersection of Bioinformatics and Health InformaticsA Case StudyMiller P. Opportunities at the Intersection of Bioinformatics and Health InformaticsA Case Study. Journal Of The American Medical Informatics Association 2000, 7: 431-438. PMID: 10984461, PMCID: PMC79037, DOI: 10.1136/jamia.2000.0070431.
• PathMasterContent-based Cell Image Retrieval Using Automated Feature ExtractionMattie M, Staib L, Stratmann E, Tagare H, Duncan J, Miller P. PathMasterContent-based Cell Image Retrieval Using Automated Feature Extraction. Journal Of The American Medical Informatics Association 2000, 7: 404-415. PMID: 10887168, PMCID: PMC61444, DOI: 10.1136/jamia.2000.0070404.
• An integrated web interface for large-scale characterization of sequence dataCheung K, Kumar A, Snyder M, Miller P. An integrated web interface for large-scale characterization of sequence data. Functional & Integrative Genomics 2000, 1: 70-75. PMID: 11793223, DOI: 10.1007/s101420000004.
• IMM/Scrub: A Domain-Specific Tool for the Deduplication of Vaccination History Records in Childhood Immunization RegistriesMiller P, Frawley S, Sayward F. IMM/Scrub: A Domain-Specific Tool for the Deduplication of Vaccination History Records in Childhood Immunization Registries. Journal Of Biomedical Informatics 2000, 33: 126-143. PMID: 10854120, DOI: 10.1006/cbmr.1999.1534.
• An integrated web interface for large-scale characterization of sequence dataCheung K, Kumar A, Snyder M, Miller P. An integrated web interface for large-scale characterization of sequence data. Functional & Integrative Genomics 2000, 1: 70. DOI: 10.1007/s101420050008.
• Exploring the Degree of Concordance of Coded and Textual Data in Answering Clinical Queries from a Clinical Data RepositoryStein H, Nadkarni P, Erdos J, Miller P. Exploring the Degree of Concordance of Coded and Textual Data in Answering Clinical Queries from a Clinical Data Repository. Journal Of The American Medical Informatics Association 2000, 7: 42-54. PMID: 10641962, PMCID: PMC61454, DOI: 10.1136/jamia.2000.0070042.
• Olfactory Receptor Database: a sensory chemoreceptor resourceSkoufos E, Marenco L, Nadkarni P, Miller P, Shepherd G. Olfactory Receptor Database: a sensory chemoreceptor resource. Nucleic Acids Research 2000, 28: 341-343. PMID: 10592268, PMCID: PMC102443, DOI: 10.1093/nar/28.1.341.
• Informatics issues in the national dissemination of a computer-based clinical guideline: a case study in childhood immunization.Miller P, Frawley S, Sayward F. Informatics issues in the national dissemination of a computer-based clinical guideline: a case study in childhood immunization. AMIA Annual Symposium Proceedings 2000, 580-4. PMID: 11079950, PMCID: PMC2243834.
• ALFRED: A WEB-ACCESSIBLE ALLELE FREQUENCY DATABASECHEUNG K, MILLER P, KIDD J, KIDD K, OSIER M, PAKSTIS A. ALFRED: A WEB-ACCESSIBLE ALLELE FREQUENCY DATABASE. 1999, 639-650. DOI: 10.1142/9789814447331_0062.
• Organization of Heterogeneous Scientific Data Using the EAV/CR RepresentationNadkarni P, Marenco L, Chen R, Skoufos E, Shepherd G, Miller P. Organization of Heterogeneous Scientific Data Using the EAV/CR Representation. Journal Of The American Medical Informatics Association 1999, 6: 478-493. PMID: 10579606, PMCID: PMC61391, DOI: 10.1136/jamia.1999.0060478.
• Large-scale analysis of the yeast genome by transposon tagging and gene disruptionRoss-Macdonald P, Coelho P, Roemer T, Agarwal S, Kumar A, Jansen R, Cheung K, Sheehan A, Symoniatis D, Umansky L, Heidtman M, Nelson F, Iwasaki H, Hager K, Gerstein M, Miller P, Roeder G, Snyder M. Large-scale analysis of the yeast genome by transposon tagging and gene disruption. Nature 1999, 402: 413-418. PMID: 10586881, DOI: 10.1038/46558.
• Using semantic constraints to help verify the completeness of a computer-based clinical guideline for childhood immunizationMiller D, Frawley S, Miller P. Using semantic constraints to help verify the completeness of a computer-based clinical guideline for childhood immunization. Computer Methods And Programs In Biomedicine 1999, 58: 267-280. PMID: 10094231, DOI: 10.1016/s0169-2607(98)00090-x.
• Olfactory Receptor Database: a database of the largest eukaryotic gene familySkoufos E, Healy M, Singer M, Nadkarni P, Miller P, Shepherd G. Olfactory Receptor Database: a database of the largest eukaryotic gene family. Nucleic Acids Research 1999, 27: 343-345. PMID: 9847223, PMCID: PMC148178, DOI: 10.1093/nar/27.1.343.
• Neuronal database integration: the Senselab EAV data model.Marenco L, Nadkarni P, Skoufos E, Shepherd G, Miller P. Neuronal database integration: the Senselab EAV data model. AMIA Annual Symposium Proceedings 1999, 102-6. PMID: 10566329, PMCID: PMC2232788.
• Exploring three approaches for handling incomplete patient histories in a computer-based guideline for childhood immunization.Miller P, Frawley S, Sayward F. Exploring three approaches for handling incomplete patient histories in a computer-based guideline for childhood immunization. AMIA Annual Symposium Proceedings 1999, 878-82. PMID: 10566486, PMCID: PMC2232702.
• The Human Brain Project: neuroinformatics tools for integrating, searching and modeling multidisciplinary neuroscience dataShepherd G, Mirsky J, Healy M, Singer M, Skoufos E, Hines M, Nadkarni P, Miller P. The Human Brain Project: neuroinformatics tools for integrating, searching and modeling multidisciplinary neuroscience data. Trends In Neurosciences 1998, 21: 460-468. PMID: 9829685, DOI: 10.1016/s0166-2236(98)01300-9.
• Database tools for integrating and searching membrane property data correlated with neuronal morphologyMirsky J, Nadkarni P, Healy M, Miller P, Shepherd G. Database tools for integrating and searching membrane property data correlated with neuronal morphology. Journal Of Neuroscience Methods 1998, 82: 105-121. PMID: 10223520, DOI: 10.1016/s0165-0270(98)00049-1.
• Tools for Immunization Guideline Knowledge Maintenance II. Automated Web-Based Generation of User-Customized Test CasesMiller P, Frawley S, Brandt C, Sayward F. Tools for Immunization Guideline Knowledge Maintenance II. Automated Web-Based Generation of User-Customized Test Cases. Journal Of Biomedical Informatics 1998, 31: 190-208. PMID: 9628750, DOI: 10.1006/cbmr.1998.1471.
• Tools for Immunization Guideline Knowledge Maintenance I. Automated Generation of the Logic “Kernel” for Immunization ForecastingMiller P. Tools for Immunization Guideline Knowledge Maintenance I. Automated Generation of the Logic “Kernel” for Immunization Forecasting. Journal Of Biomedical Informatics 1998, 31: 172-189. PMID: 9628749, DOI: 10.1006/cbmr.1998.1472.
• Managing Attribute–Value Clinical Trials Data Using the ACT/DB Client–Server Database SystemNadkarni P, Brandt C, Frawley S, Sayward F, Einbinder R, Zelterman D, Schacter L, Miller P. Managing Attribute–Value Clinical Trials Data Using the ACT/DB Client–Server Database System. Journal Of The American Medical Informatics Association 1998, 5: 139-151. PMID: 9524347, PMCID: PMC61285, DOI: 10.1136/jamia.1998.0050139.
• Issues in accommodating national changes and local variation in a computer-based guideline for childhood immunization and in related knowledge maintenance tools.Miller P, Frawley S, Sayward F. Issues in accommodating national changes and local variation in a computer-based guideline for childhood immunization and in related knowledge maintenance tools. AMIA Annual Symposium Proceedings 1998, 563-7. PMID: 9929282, PMCID: PMC2232304.
• Combining Tabular, Rule-Based, and Procedural Knowledge in Computer-Based Guidelines for Childhood ImmunizationMiller P, Frawley S, Sayward F, Yasnoff W, Duncan L, Fleming D. Combining Tabular, Rule-Based, and Procedural Knowledge in Computer-Based Guidelines for Childhood Immunization. Journal Of Biomedical Informatics 1997, 30: 211-231. PMID: 9281329, DOI: 10.1006/cbmr.1997.1445.
• Evaluating IAIMS at YaleInformation AccessGrajek S, Calarco P, Frawley S, McKay J, Miller P, Paton J, Roderer N, Sullivan J. Evaluating IAIMS at YaleInformation Access. Journal Of The American Medical Informatics Association 1997, 4: 138-149. PMID: 9067879, PMCID: PMC61503, DOI: 10.1136/jamia.1997.0040138.
• Using explicitly represented biological relationships for database navigation and searching via the World-Wide WebPanzer S, Cooley L, Miller P. Using explicitly represented biological relationships for database navigation and searching via the World-Wide Web. Bioinformatics 1997, 13: 281-290. PMID: 9183533, DOI: 10.1093/bioinformatics/13.3.281.
• Olfactory Receptor Database (ORDB): A Resource for Sharing and Analyzing Published and Unpublished DataHealy M, Smith J, Singer M, Nadkarni P, Skoufos E, Miller P, Shepherd G. Olfactory Receptor Database (ORDB): A Resource for Sharing and Analyzing Published and Unpublished Data. Chemical Senses 1997, 22: 321-326. PMID: 9218144, DOI: 10.1093/chemse/22.3.321.
• A prototype Web site for immunization knowledge maintenance.Miller P, Frawley S, Brandt C, Sayward F. A prototype Web site for immunization knowledge maintenance. AMIA Annual Symposium Proceedings 1997, 293-7. PMID: 9357635, PMCID: PMC2233449.
• ModelDB: An Environment for Running and Storing Computational Models and Their Results Applied to NeurosciencePeterson B, Healy M, Nadkarni P, Miller P, Shepherd G. ModelDB: An Environment for Running and Storing Computational Models and Their Results Applied to Neuroscience. Journal Of The American Medical Informatics Association 1996, 3: 389-398. PMID: 8930855, PMCID: PMC116323, DOI: 10.1136/jamia.1996.97084512.
• PhenoDB: An Integrated Client/Server Database for Linkage and Population GeneticsCheung K, Nadkarni P, Silverstein S, Kidd J, Pakstis A, Miller P, Kidd K. PhenoDB: An Integrated Client/Server Database for Linkage and Population Genetics. Journal Of Biomedical Informatics 1996, 29: 327-337. PMID: 8812078, DOI: 10.1006/cbmr.1996.0024.
• Medical Informatics Training at Yale University School of MedicineMiller P, Shiffman R, Silverstein S, Frawley S, Nadkarni P. Medical Informatics Training at Yale University School of Medicine. Yearbook Of Medical Informatics 1996, 05: 122-125. PMID: 27699318, DOI: 10.1055/s-0038-1638054.
• CONTIG EXPLORER: Interactive Marker-Content Map AssemblyNadkarni P, Banks A, Montgomery K, LeBlanc-Stracewski J, Miller P, Krauter K. CONTIG EXPLORER: Interactive Marker-Content Map Assembly. Genomics 1996, 31: 301-310. PMID: 8838311, DOI: 10.1006/geno.1996.0052.
• DNA Workbench: A Database Package to Manage Regional Physical MappingNadkarni P, Cheung K, Castiglione C, Miller P, Kidd K. DNA Workbench: A Database Package to Manage Regional Physical Mapping. Journal Of Computational Biology 1996, 3: 319-329. PMID: 8811490, DOI: 10.1089/cmb.1996.3.319.
• Portability Issues for a Structured Clinical Vocabulary: Mapping from Yale to the Columbia Medical Entities DictionaryKannry J, Wright L, Shifman M, Silverstein S, Miller P. Portability Issues for a Structured Clinical Vocabulary: Mapping from Yale to the Columbia Medical Entities Dictionary. Journal Of The American Medical Informatics Association 1996, 3: 66-78. PMID: 8750391, PMCID: PMC116288, DOI: 10.1136/jamia.1996.96342650.
• IMM/Serve: a rule-based program for childhood immunization.Miller P, Frawley S, Sayward F, Yasnoff W, Duncan L, Fleming D. IMM/Serve: a rule-based program for childhood immunization. AMIA Annual Symposium Proceedings 1996, 184-8. PMID: 8947653, PMCID: PMC2233221.
• Internet-based Support for Bioscience Research: A Collaborative Genome center for Human Chromosome 12Miller P, Nadkarni P, Kidd K, Cheung K, Ward D, Banks A, Bray-Ward P, Cupelli L, Herdman V, Marondel I, Montcomery K, Renault B, Yoon S, Krauter K, Kucherlapati R. Internet-based Support for Bioscience Research: A Collaborative Genome center for Human Chromosome 12. Journal Of The American Medical Informatics Association 1995, 2: 351-364. PMID: 8581551, PMCID: PMC116278, DOI: 10.1136/jamia.1995.96157828.
• Trade-offs in Producing Patient-specific Recommendations from a Computer-based Clinical Guideline: A Case StudyMiller P, Frawley S. Trade-offs in Producing Patient-specific Recommendations from a Computer-based Clinical Guideline: A Case Study. Journal Of The American Medical Informatics Association 1995, 2: 238-242. PMID: 7583647, PMCID: PMC116261, DOI: 10.1136/jamia.1995.96010392.
• Lessons Learned from a Pilot Implementation of the UMLS Information Sources MapMiller P, Frawley S, Wright L, Roderer N, Powsner S. Lessons Learned from a Pilot Implementation of the UMLS Information Sources Map. Journal Of The American Medical Informatics Association 1995, 2: 102-115. PMID: 7743314, PMCID: PMC116244, DOI: 10.1136/jamia.1995.95261904.
• Network-based informatics support of research collaborations in the Human Genome Project and the Human Brain Project.Miller P, Nadkarni P, Kucherlapati R, Krauter K, Kidd K, Ward D, Shepherd G, Berkowicz D. Network-based informatics support of research collaborations in the Human Genome Project and the Human Brain Project. Medinfo. 1995, 8 Pt 2: 1541-4. PMID: 8591495.
• Medical informatics in clinical medicine and the biosciencesMiller P. Medical informatics in clinical medicine and the biosciences. Nature Medicine 1995, 1: 93-94. PMID: 7584961, DOI: 10.1038/nm0195-93.
• Mupit: helping clinicians build computer-based multimedia applications.Schippits M, Miller P, Perrino A, Rosenblatt W, Smith G. Mupit: helping clinicians build computer-based multimedia applications. M.D. Computing 1995, 12: 215-25. PMID: 7596253.
• Computer-assisted restriction mapping: an integrated approach to handling experimental uncertainty.Wright L, Lichter J, Reinitz J, Shifman M, Kidd K, Miller P. Computer-assisted restriction mapping: an integrated approach to handling experimental uncertainty. Bioinformatics 1994, 10: 435-42. PMID: 7804876, DOI: 10.1093/bioinformatics/10.4.435.
• Building a cooperative institutional model of IAIMS at the Yale-New Haven Medical Center.Miller P, Paton J, Roderer N, Jaffe C, Clyman J, Shifman M, Sullivan J, Newman M, Tepping M, Hierholzer W. Building a cooperative institutional model of IAIMS at the Yale-New Haven Medical Center. AMIA Annual Symposium Proceedings 1994, 1002. PMID: 7949844, PMCID: PMC2247869.
• Automated Integration of External Databases: A Knowledge-Based Approach to Enhancing Rule-Based Expert SystemsBerman L, Cullen M, Miller P. Automated Integration of External Databases: A Knowledge-Based Approach to Enhancing Rule-Based Expert Systems. Journal Of Biomedical Informatics 1993, 26: 230-241. PMID: 8325003, DOI: 10.1006/cbmr.1993.1016.
• Using a network menu and the UMLS Information Sources Map to facilitate access to online reference materials.Clyman J, Powsner S, Paton J, Miller P. Using a network menu and the UMLS Information Sources Map to facilitate access to online reference materials. Journal Of The Medical Library Association 1993, 81: 207-16. PMID: 8472006, PMCID: PMC225763.
• NetMenu: experience in the implementation of an institutional menu of information sources.Shifman M, Clyman J, Paton J, Powsner S, Roderer N, Miller P. NetMenu: experience in the implementation of an institutional menu of information sources. AMIA Annual Symposium Proceedings 1993, 554-8. PMID: 8130535, PMCID: PMC2850638.
• Augmenting GRATEFUL MED with the UMLS Metathesaurus: an initial evaluation.Jachna J, Powsner S, Miller P. Augmenting GRATEFUL MED with the UMLS Metathesaurus: an initial evaluation. Journal Of The Medical Library Association 1993, 81: 20-8. PMID: 8428185, PMCID: PMC225723.
• An information sources map for Occupational and Environmental Medicine: guidance to network-based information through domain-specific indexing.Silverstein S, Miller P, Cullen M. An information sources map for Occupational and Environmental Medicine: guidance to network-based information through domain-specific indexing. AMIA Annual Symposium Proceedings 1993, 616-20. PMID: 8130548, PMCID: PMC2850650.
• Prototyping an institutional IAIMS/UMLS information environment for an academic medical center.Miller P, Paton J, Clyman J, Powsner S. Prototyping an institutional IAIMS/UMLS information environment for an academic medical center. Journal Of The Medical Library Association 1992, 80: 281-7. PMID: 1326371, PMCID: PMC225668.
• Parallel Computation for Medicine and Biology: Applications of Linda At Yale UniversitySittig D, Shifman M, Nadkarni P, Miller P. Parallel Computation for Medicine and Biology: Applications of Linda At Yale University. The International Journal Of High Performance Computing Applications 1992, 6: 147-163. DOI: 10.1177/109434209200600203.
• Molecular dynamics simulation on a network of workstations using a machine-independent parallel programming languageShifman M, Windemuth A, Schulten K, Miller P. Molecular dynamics simulation on a network of workstations using a machine-independent parallel programming language. Journal Of Biomedical Informatics 1992, 25: 168-180. PMID: 1582193, DOI: 10.1016/0010-4809(92)90019-7.
• Online bibliographic information: integration into an emerging IAIMS environment.Paton J, Belanger A, Cheung K, Grajek S, Branch K, Ikeda N, Sette L, Miller P, Fryer R. Online bibliographic information: integration into an emerging IAIMS environment. AMIA Annual Symposium Proceedings 1992, 605-9. PMID: 1336416, PMCID: PMC2248136.
• Fast Computation of Genetic Likelihoods on Human Pedigree DataGoradia T, Lange K, Miller P, Nadkarni P. Fast Computation of Genetic Likelihoods on Human Pedigree Data. Human Heredity 1992, 42: 42-62. PMID: 1555846, DOI: 10.1159/000154045.
• Harnessing networked workstations as a powerful parallel computer: a general paradigm illustrated using three programs for genetic linkage analysis.Miller P, Nadkarni P, Bercovitz P. Harnessing networked workstations as a powerful parallel computer: a general paradigm illustrated using three programs for genetic linkage analysis. Bioinformatics 1992, 8: 141-7. PMID: 1591609, DOI: 10.1093/bioinformatics/8.2.141.
• Comparing machine-independent versus machine-specific parallelization of a software platform for biological sequence comparison.Miller P, Nadkarni P, Pearson W. Comparing machine-independent versus machine-specific parallelization of a software platform for biological sequence comparison. Bioinformatics 1992, 8: 167-75. PMID: 1591612, DOI: 10.1093/bioinformatics/8.2.167.
• PFGE MAPPER and PFGE READER: two tools to aid in the analysis and data input of pulse field gel electrophoresis maps.Shifman M, Nadkarni P, Miller P. PFGE MAPPER and PFGE READER: two tools to aid in the analysis and data input of pulse field gel electrophoresis maps. AMIA Annual Symposium Proceedings 1992, 361-5. PMID: 1482898, PMCID: PMC2248078.
• CHROMINFO: a database for viewing and editing top-level chromosome data.Nadkarni P, Reeders S, Shifman M, Miller P. CHROMINFO: a database for viewing and editing top-level chromosome data. AMIA Annual Symposium Proceedings 1992, 366-70. PMID: 1482899, PMCID: PMC2248058.
• Automated Online Transition from the Medical Record to the Psychiatric LiteraturePowsner S, Miller P. Automated Online Transition from the Medical Record to the Psychiatric Literature. Methods Of Information In Medicine 1992, 31: 169-174. PMID: 1406330, DOI: 10.1055/s-0038-1634873.
• Automated integration of external databases: a knowledge-based approach to enhancing rule-based expert systems.Berman L, Cullen M, Miller P. Automated integration of external databases: a knowledge-based approach to enhancing rule-based expert systems. AMIA Annual Symposium Proceedings 1992, 227-33. PMID: 1482872, PMCID: PMC2247997.
• Real-time data fusion in the intensive care unitFactor M, Gelernter D, Kolb C, Miller P, Sittig D. Real-time data fusion in the intensive care unit. Computer 1991, 24: 45-54. DOI: 10.1109/2.116850.
• Parallelizing genetic linkage analysis: A case study for applying parallel computation in molecular biologyMiller P, Nadkarni P, Gelernter J, Carriero N, Pakstis A, Kidd K. Parallelizing genetic linkage analysis: A case study for applying parallel computation in molecular biology. Journal Of Biomedical Informatics 1991, 24: 234-248. PMID: 1868693, DOI: 10.1016/0010-4809(91)90046-y.
• A parallel computing approach to genetic sequence comparison: The master-worker paradigm with interworker communicationSittig D, Foulser D, Carriero N, McCorkle G, Miller P. A parallel computing approach to genetic sequence comparison: The master-worker paradigm with interworker communication. Journal Of Biomedical Informatics 1991, 24: 152-169. PMID: 2036781, DOI: 10.1016/0010-4809(91)90027-t.
• Parallel computation and FASTA: confronting the problem of parallel database search for a fast sequence comparison algorithmMiller P, Nadkarni P, Carriero N. Parallel computation and FASTA: confronting the problem of parallel database search for a fast sequence comparison algorithm. Bioinformatics 1991, 7: 71-78. PMID: 2004277, DOI: 10.1093/bioinformatics/7.1.71.
• Parallel computation for biological sequence comparison: comparing a portable model to the native model for the Intel Hypercube.Nadkarni P, Miller P. Parallel computation for biological sequence comparison: comparing a portable model to the native model for the Intel Hypercube. AMIA Annual Symposium Proceedings 1991, 404-8. PMID: 1807632, PMCID: PMC2247563.
• Modeling uncertainty in a database for physical gene mapping data.Miller P, Shifman M, Kidd K. Modeling uncertainty in a database for physical gene mapping data. AMIA Annual Symposium Proceedings 1991, 409-13. PMID: 1807633, PMCID: PMC2247564.
• From patient reports to bibliographic retrieval: a Meta-1 front-end.Powsner S, Miller P. From patient reports to bibliographic retrieval: a Meta-1 front-end. AMIA Annual Symposium Proceedings 1991, 526-30. PMID: 1807656, PMCID: PMC2247587.
• SENEX: a computer-based representation of cellular signal transduction processes in the central nervous system.Ball S, Mah V, Miller P. SENEX: a computer-based representation of cellular signal transduction processes in the central nervous system. Bioinformatics 1991, 7: 175-87. PMID: 2059842, DOI: 10.1093/bioinformatics/7.2.175.
• Molecular dynamics simulation on a network of workstations using a machine-independent parallel programming language.Shifman M, Windemuth A, Schulten K, Miller P. Molecular dynamics simulation on a network of workstations using a machine-independent parallel programming language. AMIA Annual Symposium Proceedings 1991, 414-8. PMID: 1807634, PMCID: PMC2247565.
• PATHMASTER: Modelling differential diagnosis as “dynamic competition” between systematic analysis and disease-directed deductionFrohlich M, Miller P, Morrow J. PATHMASTER: Modelling differential diagnosis as “dynamic competition” between systematic analysis and disease-directed deduction. Journal Of Biomedical Informatics 1990, 23: 499-513. PMID: 2276261, DOI: 10.1016/0010-4809(90)90037-d.
• A456 RECEIVER OPERATING CHARACTERISTIC (ROC) CURVE HELPS OPTIMIZE BLOOD PRESSURE DETECTION ALGORITHMSSittig D, Clyman J, Cheung K, Miller P. A456 RECEIVER OPERATING CHARACTERISTIC (ROC) CURVE HELPS OPTIMIZE BLOOD PRESSURE DETECTION ALGORITHMS. Anesthesiology 1990, 73: na. DOI: 10.1097/00000542-199009001-00454.
• Combining statistical, rule-based, and physiologic model-based methods to assist in the management of diabetes mellitusBerger M, Gelfand R, Miller P. Combining statistical, rule-based, and physiologic model-based methods to assist in the management of diabetes mellitus. Journal Of Biomedical Informatics 1990, 23: 346-357. PMID: 2203598, DOI: 10.1016/0010-4809(90)90026-9.
• Knowledge-based radiologic image retrieval using axes of clinical relevanceCohn A, Miller P, Fisher P, Mutalik P, Swett H. Knowledge-based radiologic image retrieval using axes of clinical relevance. Journal Of Biomedical Informatics 1990, 23: 199-221. PMID: 2350958, DOI: 10.1016/0010-4809(90)90017-7.
• A parallel software architecture for building intelligent medical monitorsFactor M, Sittig D, Cohn A, Gelernter D, Miller P, Rosenbaum S. A parallel software architecture for building intelligent medical monitors. International Journal Of Clinical Monitoring And Computing 1990, 7: 117-128. PMID: 2373942, DOI: 10.1007/bf01724205.
• A hyperlipidemia advice systemClyman J, Gelfand R, Miller P. A hyperlipidemia advice system. Journal Of The American College Of Cardiology 1990, 15: a268. DOI: 10.1016/0735-1097(90)92786-2.
• Exploring subjective vs. objective issues in the validation of computer-based critiquing adviceRothschild M, Swett H, Fisher P, Weltin G, Miller P. Exploring subjective vs. objective issues in the validation of computer-based critiquing advice. Computer Methods And Programs In Biomedicine 1990, 31: 11-18. PMID: 2311365, DOI: 10.1016/0169-2607(90)90027-7.
• The evaluation of clinical decision support systems: what is necessary versus what is interestingMiller P, Sittig D. The evaluation of clinical decision support systems: what is necessary versus what is interesting. Informatics For Health And Social Care 1990, 15: 185-190. PMID: 2232954, DOI: 10.3109/14639239009025266.
• Automated bibliographic retrieval based on current topics in hepatology: HepatopixPowsner S, Riely C, Barwick K, Morrow J, Miller P. Automated bibliographic retrieval based on current topics in hepatology: Hepatopix. Journal Of Biomedical Informatics 1989, 22: 552-564. PMID: 2686929, DOI: 10.1016/0010-4809(89)90075-x.
• REAL-TIME PHYSIOLOGIC TREND DETECTION AND ARTIFACT REJECTION USING A PARALLEL COMPUTERSittig D, Rosenbaum S, Miller P, Factor M. REAL-TIME PHYSIOLOGIC TREND DETECTION AND ARTIFACT REJECTION USING A PARALLEL COMPUTER. Anesthesiology 1989, 71: a341. DOI: 10.1097/00000542-198909001-00341.
• Expert system-controlled image display.Swett H, Fisher P, Cohn A, Miller P, Mutalik P. Expert system-controlled image display. Radiology 1989, 172: 487-93. PMID: 2664871, DOI: 10.1148/radiology.172.2.2664871.
• Optimizing radiologic workup: An artificial intelligence approachSwett H, Rothschild M, Weltin G, Fisher P, Miller P. Optimizing radiologic workup: An artificial intelligence approach. Journal Of Digital Imaging 1989, 2: 15-20. PMID: 2488146, DOI: 10.1007/bf03168010.
• Capturing the semantic relationship between clinical terms with current MeSH bibliographic codingMiller P, Smith P, Morrow J, Riely C, Powsner S. Capturing the semantic relationship between clinical terms with current MeSH bibliographic coding. Computer Methods And Programs In Biomedicine 1988, 27: 205-211. PMID: 3063430, DOI: 10.1016/0169-2607(88)90084-3.
• Artificial intelligence research in anesthesia and intensive careRennels G, Miller P. Artificial intelligence research in anesthesia and intensive care. Journal Of Clinical Monitoring 1988, 4: 274-289. PMID: 3057121, DOI: 10.1007/bf01617327.
• Semantically assisted medical bibliographic retrieval: an experimental computer system.Miller P, Morrow J, Powsner S, Riely C. Semantically assisted medical bibliographic retrieval: an experimental computer system. Journal Of The Medical Library Association 1988, 76: 131-6. PMID: 3285933, PMCID: PMC227164.
• Semantic relationships and medical bibliographic retrieval: A preliminary assessmentMiller P, Barwick K, Morrow J, Powsner S, Riely C. Semantic relationships and medical bibliographic retrieval: A preliminary assessment. Journal Of Biomedical Informatics 1988, 21: 64-77. PMID: 3278844, DOI: 10.1016/0010-4809(88)90043-2.
• Computational Model of Reasoning from the Clinical LiteratureRennels G, Shortliffe E, Stockdale F, Miller P. Computational Model of Reasoning from the Clinical Literature. 1988, 125-140. DOI: 10.1007/978-1-4613-8777-0_10.
• Knowledge Acquisition and Verification Tools for Medical Expert SystemsMars N, Miller P. Knowledge Acquisition and Verification Tools for Medical Expert Systems. 1988, 141-152. DOI: 10.1007/978-1-4613-8777-0_11.
• HYDRA: A Knowledge Acquisition Tool for Expert Systems That Critique Medical Work-upMiller P, Blumenfrucht S, Rose J, Rothschild M, Swett H, Weltin G, Mars N. HYDRA: A Knowledge Acquisition Tool for Expert Systems That Critique Medical Work-up. 1988, 181-201. DOI: 10.1007/978-1-4613-8777-0_14.
• ICON: a computer-based approach to differential diagnosis in radiology.Swett H, Miller P. ICON: a computer-based approach to differential diagnosis in radiology. Radiology 1987, 163: 555-8. PMID: 3550885, DOI: 10.1148/radiology.163.2.3550885.
• A computational model of reasoning from the clinical literatureRennels G, Shortliffe E, Stockdale F, Miller P. A computational model of reasoning from the clinical literature. Computer Methods And Programs In Biomedicine 1987, 24: 139-149. PMID: 3297479, DOI: 10.1016/0169-2607(87)90025-3.
• HydraMiller P, Blumenfrucht S, Rose J, Rothschild M, Swett H, Weltin G, Mars N. Hydra. Medical Decision Making 1987, 7: 12-21. PMID: 3807686, DOI: 10.1177/0272989x8700700106.
• Knowledge Acquisition and Veritication Tools for Medical Expert SystemsMars N, Miller P. Knowledge Acquisition and Veritication Tools for Medical Expert Systems. Medical Decision Making 1987, 7: 6-11. PMID: 3807692, DOI: 10.1177/0272989x8700700105.
• Choice and Explanation in Medical ManagementRennels G, Shortliffe E, Miller P. Choice and Explanation in Medical Management. Medical Decision Making 1987, 7: 22-31. PMID: 3807687, DOI: 10.1177/0272989x8700700107.
• Reasoning from the clinical literature: a "distance" metric.Rennels G, Shortliffe E, Stockdale F, Miller P. Reasoning from the clinical literature: a "distance" metric. Bulletin Du Cancer 1987, 74: 215-20. PMID: 3607304.
• Extending computer-based critiquing to a new domain:ATTENDING, ESSENTIAL-ATTENDING, and VQ-ATTENDINGMiller P. Extending computer-based critiquing to a new domain:ATTENDING, ESSENTIAL-ATTENDING, and VQ-ATTENDING. International Journal Of Clinical Monitoring And Computing 1986, 2: 135-142. PMID: 3459786, DOI: 10.1007/bf02915880.
• Building an Expert Critiquing System: ESSENTIAL-ATTENDINGMiller P. Building an Expert Critiquing System: ESSENTIAL-ATTENDING. Methods Of Information In Medicine 1986, 25: 71-78. PMID: 3702750, DOI: 10.1055/s-0038-1635454.
• The evaluation of artificial intelligence systems in medicineMiller P. The evaluation of artificial intelligence systems in medicine. Computer Methods And Programs In Biomedicine 1986, 22: 3-11. PMID: 3516560, DOI: 10.1016/0169-2607(86)90087-8.
• Critiquing the process of radiologic differential diagnosisMiller P, Shaw C, Rose J, Swett H. Critiquing the process of radiologic differential diagnosis. Computer Methods And Programs In Biomedicine 1986, 22: 21-25. PMID: 3516558, DOI: 10.1016/0169-2607(86)90089-1.
• Critiquing: A different approach to expert computer advice in medicineMiller P. Critiquing: A different approach to expert computer advice in medicine. Informatics For Health And Social Care 1986, 11: 29-38. PMID: 3515069, DOI: 10.3109/14639238608994972.
• Effect of Left-to-Right, Mixed Left-to-Right, and Right-to-Left Shunts on Inhalational Anesthetic Induction in ChildrenTANNER G, ANGERS D, BARASH P, MULLA A, MILLER P, ROTHSTEIN P. Effect of Left-to-Right, Mixed Left-to-Right, and Right-to-Left Shunts on Inhalational Anesthetic Induction in Children. Survey Of Anesthesiology 1985, 29: 297-298. DOI: 10.1097/00132586-198510000-00047.
• Goal-directed critiquing by computer: Ventilator managementMiller P. Goal-directed critiquing by computer: Ventilator management. Journal Of Biomedical Informatics 1985, 18: 422-438. PMID: 3931971, DOI: 10.1016/0010-4809(85)90020-5.
• Effect of Left-to-Right, Mixed Left-to-Right, and Right-to-Left Shunts on Inhalational Anesthetic Induction in Children: A Computer Model.Tanner G, Angers D, Barash P, Mulla A, Miller P, Rothstein P. Effect of Left-to-Right, Mixed Left-to-Right, and Right-to-Left Shunts on Inhalational Anesthetic Induction in Children: A Computer Model. Anesthesia & Analgesia 1985, 64: 101. PMID: 3970355, DOI: 10.1213/00000539-198502000-00002.
• An expert system which critiques patient workup: Modeling conflicting expertiseMiller P, Blumenfrucht S, Black H. An expert system which critiques patient workup: Modeling conflicting expertise. Journal Of Biomedical Informatics 1984, 17: 554-569. PMID: 6391803, DOI: 10.1016/0010-4809(84)90020-x.
• HT-ATTENDINGMiller P, Black H. HT-ATTENDING. Journal Of Medical Systems 1984, 8: 181-187. PMID: 6548249, DOI: 10.1007/bf02224502.
• Medical plan-analysis by computer: Critiquing the pharmacologic management of essential hypertensionMiller P, Black H. Medical plan-analysis by computer: Critiquing the pharmacologic management of essential hypertension. Journal Of Biomedical Informatics 1984, 17: 38-54. PMID: 6697700, DOI: 10.1016/0010-4809(84)90005-3.
• Medical plan-analysis by computerMiller P. Medical plan-analysis by computer. Computer Methods And Programs In Biomedicine 1984, 18: 15-19. PMID: 6547652, DOI: 10.1016/0010-468x(84)90019-9.
• Training for a research career in medical information science: How much is enough?Miller P. Training for a research career in medical information science: How much is enough? Informatics For Health And Social Care 1984, 9: 301-304. PMID: 6503464, DOI: 10.3109/14639238409015206.
• ATTENDING: Critiquing a Physician's Management PlanMiller P. ATTENDING: Critiquing a Physician's Management Plan. IEEE Transactions On Pattern Analysis And Machine Intelligence 1983, PAMI-5: 449-461. PMID: 21869130, DOI: 10.1109/tpami.1983.4767424.
• Teaching With “Attending”: Tutorial Use of an Expert SystemMiller P, Angers D, Keefer J, Sudan N, Tanner G. Teaching With “Attending”: Tutorial Use of an Expert System. 1983, 5: 193-201. DOI: 10.1007/978-94-009-6747-2_16.
• DOES A LEFT-TO-RIGHT SHUNT SPEED THE INDUCTION OF INHALATIONAL ANESTHESIA IN CONGENITAL HEART DISEASE?Tanner G, Angers D, Barash P, Mulla A, Miller P, Rothstein P. DOES A LEFT-TO-RIGHT SHUNT SPEED THE INDUCTION OF INHALATIONAL ANESTHESIA IN CONGENITAL HEART DISEASE? Anesthesiology 1982, 57: a427. DOI: 10.1097/00000542-198209001-00425.
• DOES A LEFT-TO-RIGHT SHUNT SPEED THE INDUCTION OF INHALATIONAL ANESTHESIA IN CONGENITAL HEART DISEASE?Tanner G, Angers D, Barash P, Mulla A, Miller P, Rothstein P. DOES A LEFT-TO-RIGHT SHUNT SPEED THE INDUCTION OF INHALATIONAL ANESTHESIA IN CONGENITAL HEART DISEASE? Anesthesiology 1982, 57: a427-a427. DOI: 10.1097/00000542-198209001-00427.
• Miller PL: Expert Critiquing Systems: Practice-Based Medical Consultation by Computer. New York: Springer-Verlag, 1986.Miller PL: Expert Critiquing Systems: Practice-Based Medical Consultation by Computer. New York: Springer-Verlag, 1986.
• Miller PL: A locally-organized parser for spoken input. Communications of the Association for Computing Machinery 17:621-630, 1974.Miller PL: A locally-organized parser for spoken input. Communications of the Association for Computing Machinery 17:621-630, 1974.
• Miller PL: Automatic Creation of a Code Generator from a Machine Description. MAC-TR-85, Project MAC, MIT, May 1971.Miller PL: Automatic Creation of a Code Generator from a Machine Description. MAC-TR-85, Project MAC, MIT, May 1971.