Jonathan P Smith, PhD, MPH
Lecturer
Research & Publications
Biography
News
Coauthors
Selected Publications
- Long-term follow-up of persons diagnosed with multidrug-resistant TB in Chennai, India, 2013-2020.Surie D, Sathyanarayanan MK, Smith JP, Shanmugam SK, Tamilzhalagan S, Selvara A, Ramesh G, Tripathy S, Khaparde SD, Ho CS, Hall-Eidson PJ, Ranganathan UDK, Ranganathan S, Moonan PK. Long-term follow-up of persons diagnosed with multidrug-resistant TB in Chennai, India, 2013-2020. Int J Tuberc Lung Dis 2024, 28: 54-56. PMID: 38178300, DOI: 10.5588/ijtld.23.0272.
- Machine learning to predict bacteriologic confirmation of Mycobacterium tuberculosis in infants and very young childrenSmith J, Milligan K, McCarthy K, Mchembere W, Okeyo E, Musau S, Okumu A, Song R, Click E, Cain K. Machine learning to predict bacteriologic confirmation of Mycobacterium tuberculosis in infants and very young children. PLOS Digital Health 2023, 2: e0000249. PMID: 37195976, PMCID: PMC10191346, DOI: 10.1371/journal.pdig.0000249.
- Retaining Patients with Drug-Resistant Tuberculosis on Treatment During the COVID-19 Pandemic - Dharavi, Mumbai, India, 2020-2022.Gomare MD, Bhide S, Deshmukh R, Kaipilyawar S, Puri V, Moonan PK, Khetade DK, Nyendak M, Yeldandi V, Smith JP, Tobias JL, Date A, Joshi R, Kumar R, Ho CS. Retaining Patients with Drug-Resistant Tuberculosis on Treatment During the COVID-19 Pandemic - Dharavi, Mumbai, India, 2020-2022. MMWR Morb Mortal Wkly Rep 2023, 72: 304-308. PMID: 36952291, DOI: 10.15585/mmwr.mm7212a2.
- Isolation and Quarantine for Coronavirus Disease 2019 in the United States, 2020–2022Oeltmann J, Vohra D, Matulewicz H, DeLuca N, Smith J, Couzens C, Lash R, Harvey B, Boyette M, Edwards A, Talboy P, Dubose O, Regan P, Loosier P, Caruso E, Katz D, Taylor M, Moonan P. Isolation and Quarantine for Coronavirus Disease 2019 in the United States, 2020–2022. Clinical Infectious Diseases 2023, 77: 212-219. PMID: 36947142, DOI: 10.1093/cid/ciad163.
- Development of treatment-decision algorithms for children evaluated for pulmonary tuberculosis: an individual participant data meta-analysisGunasekera K, Marcy O, Muñoz J, Lopez-Varela E, Sekadde M, Franke M, Bonnet M, Ahmed S, Amanullah F, Anwar A, Augusto O, Aurilio R, Banu S, Batool I, Brands A, Cain K, Carratalá-Castro L, Caws M, Click E, Cranmer L, García-Basteiro A, Hesseling A, Huynh J, Kabir S, Lecca L, Mandalakas A, Mavhunga F, Myint A, Myo K, Nampijja D, Nicol M, Orikiriza P, Palmer M, Sant'Anna C, Siddiqui S, Smith J, Song R, Thuong Thuong N, Ung V, van der Zalm M, Verkuijl S, Viney K, Walters E, Warren J, Zar H, Marais B, Graham S, Debray T, Cohen T, Seddon J. Development of treatment-decision algorithms for children evaluated for pulmonary tuberculosis: an individual participant data meta-analysis. The Lancet Child & Adolescent Health 2023, 7: 336-346. PMID: 36924781, PMCID: PMC10127218, DOI: 10.1016/s2352-4642(23)00004-4.
- HIGH-RESOLUTION CHARACTERIZATION OF NOSOCOMIAL MYCOBACTERIUM TUBERCULOSIS TRANSMISSION EVENTS IN BOTSWANASmith J, Modongo C, Oeltmann J, Dima M, Matsiri O, Fane O, Molefi T, Shin S, Barilar I, Niemann S, Zetola N, Moonan P. HIGH-RESOLUTION CHARACTERIZATION OF NOSOCOMIAL MYCOBACTERIUM TUBERCULOSIS TRANSMISSION EVENTS IN BOTSWANA. American Journal Of Epidemiology 2022, 192: 503-506. PMID: 36549903, PMCID: PMC10372855, DOI: 10.1093/aje/kwac214.
- Clinical and Radiologic Factors Associated With Detection of Mycobacterium tuberculosis in Children Under 5 Years old Using Invasive and Noninvasive Sample Collection Techniques—KenyaSmith J, Song R, McCarthy K, Mchembere W, Click E, Cain K. Clinical and Radiologic Factors Associated With Detection of Mycobacterium tuberculosis in Children Under 5 Years old Using Invasive and Noninvasive Sample Collection Techniques—Kenya. Open Forum Infectious Diseases 2022, 9: ofac560. PMID: 36386048, PMCID: PMC9664973, DOI: 10.1093/ofid/ofac560.
- Quantifying Mycobacterium tuberculosis Transmission Dynamics Across Global Settings: A Systematic AnalysisSmith J, Cohen T, Dowdy D, Shrestha S, Gandhi NR, Hill AN. Quantifying Mycobacterium tuberculosis Transmission Dynamics Across Global Settings: A Systematic Analysis. American Journal Of Epidemiology 2022, 192: 133-145. PMID: 36227246, PMCID: PMC10144641, DOI: 10.1093/aje/kwac181.
- Yes, it matters who is spreading monkeypoxSmith J. Yes, it matters who is spreading monkeypox. The Lancet Infectious Diseases 2022, 22: 1416-1417. PMID: 36152654, PMCID: PMC9533935, DOI: 10.1016/s1473-3099(22)00579-5.
- Performance of Xpert MTB/RIF and Mycobacterial Culture on Multiple Specimen Types for Diagnosis of Tuberculosis Disease in Young Children and Clinical Characterization According to Standardized Research Case DefinitionsClick ES, Song R, Smith JP, Mchembere W, Fajans M, Hariri P, Okeyo E, McCarthy KD, Gethi D, Odeny L, Musau S, Okumu A, Orwa J, Perez-Velez CM, Wright CA, Andres M, Marais BJ, Schaaf HS, Graham SM, Cruz AT, Cain KP. Performance of Xpert MTB/RIF and Mycobacterial Culture on Multiple Specimen Types for Diagnosis of Tuberculosis Disease in Young Children and Clinical Characterization According to Standardized Research Case Definitions. The Pediatric Infectious Disease Journal 2022, 41: 671-677. PMID: 35703284, PMCID: PMC9288526, DOI: 10.1097/inf.0000000000003582.
- Epidemiology beyond its limitsMcCullough LE, Maliniak ML, Amin AB, Baker JM, Baliashvili D, Barberio J, Barrera CM, Brown CA, Collin LJ, Freedman AA, Gibbs DC, Haddad MB, Hall EW, Hamid S, Harrington KRV, Holleman AM, Kaufman JA, Khan MA, Labgold K, Lee VC, Malik AA, Mann LM, Marks KJ, Nelson KN, Quader ZS, Ross-Driscoll K, Sarkar S, Shah MP, Shao IY, Smith JP, Stanhope KK, Valenzuela-Lara M, Van Dyke ME, Vyas KJ, Lash TL. Epidemiology beyond its limits. Science Advances 2022, 8: eabn3328. PMID: 35675391, PMCID: PMC9176748, DOI: 10.1126/sciadv.abn3328.
- Characterizing tuberculosis transmission dynamics in high-burden urban and rural settingsSmith JP, Oeltmann JE, Hill AN, Tobias JL, Boyd R, Click ES, Finlay A, Mondongo C, Zetola NM, Moonan PK. Characterizing tuberculosis transmission dynamics in high-burden urban and rural settings. Scientific Reports 2022, 12: 6780. PMID: 35474076, PMCID: PMC9042872, DOI: 10.1038/s41598-022-10488-2.
- Zambia Assessment of Tuberculosis (TB) and HIV in the Mines (ZATHIM): implications for programs and policiesPodewils LJ, Long EF, Fuller TJ, Mwakazanga D, Kapungu K, Tembo M, Mwanza S, Curran KG, Smith JP, Tobias JL, Kasongo W. Zambia Assessment of Tuberculosis (TB) and HIV in the Mines (ZATHIM): implications for programs and policies. BMC Public Health 2022, 22: 791. PMID: 35439984, PMCID: PMC9018205, DOI: 10.1186/s12889-022-13053-8.
- Tuberculosis attributed to transmission within healthcare facilities, Botswana—The Kopanyo StudySmith JP, Modongo C, Moonan PK, Dima M, Matsiri O, Fane O, Click ES, Boyd R, Finlay A, Surie D, Tobias JL, Zetola NM, Oeltmann JE. Tuberculosis attributed to transmission within healthcare facilities, Botswana—The Kopanyo Study. Infection Control And Hospital Epidemiology 2022, 43: 1603-1609. PMID: 35382909, PMCID: PMC9535034, DOI: 10.1017/ice.2021.517.
- Model-based analysis of tuberculosis genotype clusters in the United States reveals high degree of heterogeneity in transmission, and state-level differences across California, Florida, New York, and TexasShrestha S, Winglee K, Hill A, Shaw T, Smith J, Kammerer JS, Silk BJ, Marks S, Dowdy D. Model-based analysis of tuberculosis genotype clusters in the United States reveals high degree of heterogeneity in transmission, and state-level differences across California, Florida, New York, and Texas. Clinical Infectious Diseases 2022, 75: ciac121-. PMID: 35143641, PMCID: PMC9412192, DOI: 10.1093/cid/ciac121.
- A Cluster-based Method to Quantify Individual Heterogeneity in Tuberculosis TransmissionSmith JP, Gandhi NR, Silk BJ, Cohen T, Lopman B, Raz K, Winglee K, Kammerer S, Benkeser D, Kramer MR, Hill AN. A Cluster-based Method to Quantify Individual Heterogeneity in Tuberculosis Transmission. Epidemiology 2021, 33: 217-227. PMID: 34907974, PMCID: PMC8886690, DOI: 10.1097/ede.0000000000001452.
- Sensitive and Feasible Specimen Collection and Testing Strategies for Diagnosing Tuberculosis in Young ChildrenSong R, Click ES, McCarthy KD, Heilig CM, Mchembere W, Smith JP, Fajans M, Musau SK, Okeyo E, Okumu A, Orwa J, Gethi D, Odeny L, Lee SH, Perez-Velez CM, Wright CA, Cain KP. Sensitive and Feasible Specimen Collection and Testing Strategies for Diagnosing Tuberculosis in Young Children. JAMA Pediatrics 2021, 175: e206069. PMID: 33616611, PMCID: PMC7900937, DOI: 10.1001/jamapediatrics.2020.6069.
- Role of sleep duration and obesity-related health behaviors in young childrenGazmararian J, Smith J. Role of sleep duration and obesity-related health behaviors in young children. Preventive Medicine Reports 2020, 20: 101199. PMID: 32983854, PMCID: PMC7495100, DOI: 10.1016/j.pmedr.2020.101199.
- The Impact of Concurrent Antiretroviral Therapy and MDR-TB Treatment on Adverse Events.Smith JP, Gandhi NR, Shah NS, Mlisana K, Moodley P, Johnson BA, Allana S, Campbell A, Nelson KN, Master I, Brust JCM. The Impact of Concurrent Antiretroviral Therapy and MDR-TB Treatment on Adverse Events. JAIDS Journal Of Acquired Immune Deficiency Syndromes 2020, 83: 47-55. PMID: 31809360, PMCID: PMC6903405, DOI: 10.1097/qai.0000000000002190.
- Lung Injury on Antiretroviral Therapy in Adults With Human Immunodeficiency Virus/Tuberculosis.Ravimohan S, Auld SC, Maenetje P, Ratsela N, Mlotshwa M, Ncube I, Smith JP, Vangu MD, Sebe M, Kossenkov A, Weissman D, Wallis RS, Churchyard G, Kornfeld H, Bisson GP. Lung Injury on Antiretroviral Therapy in Adults With Human Immunodeficiency Virus/Tuberculosis. Clinical Infectious Diseases 2019, 70: 1845-1854. PMID: 31242296, PMCID: PMC7156779, DOI: 10.1093/cid/ciz560.
- Those Who Don’t Return: Improving Efforts to Address Tuberculosis Among Former Miners in Southern AfricaSmith J, Blom P. Those Who Don’t Return: Improving Efforts to Address Tuberculosis Among Former Miners in Southern Africa. NEW SOLUTIONS A Journal Of Environmental And Occupational Health Policy 2019, 29: 76-104. PMID: 30791826, DOI: 10.1177/1048291119832082.
- Racial disparities and sleep among preschool aged children: a systematic reviewSmith JP, Hardy ST, Hale LE, Gazmararian JA. Racial disparities and sleep among preschool aged children: a systematic review. Sleep Health 2018, 5: 49-57. PMID: 30670165, PMCID: PMC6519123, DOI: 10.1016/j.sleh.2018.09.010.
- Improved Survival and Cure Rates With Concurrent Treatment for Multidrug-Resistant Tuberculosis-Human Immunodeficiency Virus Coinfection in South Africa.Brust JCM, Shah NS, Mlisana K, Moodley P, Allana S, Campbell A, Johnson BA, Master I, Mthiyane T, Lachman S, Larkan LM, Ning Y, Malik A, Smith JP, Gandhi NR. Improved Survival and Cure Rates With Concurrent Treatment for Multidrug-Resistant Tuberculosis-Human Immunodeficiency Virus Coinfection in South Africa. Clinical Infectious Diseases 2017, 66: 1246-1253. PMID: 29293906, PMCID: PMC5888963, DOI: 10.1093/cid/cix1125.
- Why healthcare workers are sick of TBvon Delft A, Dramowski A, Khosa C, Kotze K, Lederer P, Mosidi T, Peters JA, Smith J, van der Westhuizen HM, von Delft D, Willems B, Bates M, Craig G, Maeurer M, Marais BJ, Mwaba P, Nunes EA, Nyirenda T, Oliver M, Zumla A. Why healthcare workers are sick of TB. International Journal Of Infectious Diseases 2015, 32: 147-151. PMID: 25809771, DOI: 10.1016/j.ijid.2014.12.003.
- Aspiring to Zero Tuberculosis Deaths among Southern Africa's Miners: Is There a Way Forward?Dharmadhikari A, Smith J, Nardell E, Churchyard G, Keshavjee S. Aspiring to Zero Tuberculosis Deaths among Southern Africa's Miners: Is There a Way Forward? International Journal Of Social Determinants Of Health And Health Services 2013, 43: 651-664. PMID: 24397232, DOI: 10.2190/hs.43.4.d.
- Nanoparticle delivery of anti-tuberculosis chemotherapy as a potential mediator against drug-resistant tuberculosis.Smith JP. Nanoparticle delivery of anti-tuberculosis chemotherapy as a potential mediator against drug-resistant tuberculosis. The Yale Journal Of Biology And Medicine 2011, 84: 361-9. PMID: 22180674, PMCID: PMC3238330.