2018
Segmenting the Brain Surface From CT Images With Artifacts Using Locally Oriented Appearance and Dictionary Learning
Onofrey JA, Staib LH, Papademetris X. Segmenting the Brain Surface From CT Images With Artifacts Using Locally Oriented Appearance and Dictionary Learning. IEEE Transactions On Medical Imaging 2018, 38: 596-607. PMID: 30176584, PMCID: PMC6476428, DOI: 10.1109/tmi.2018.2868045.Peer-Reviewed Original Research
2016
MRI-TRUS Image Synthesis with Application to Image-Guided Prostate Intervention
Onofrey J, Oksuz I, Sarkar S, Venkataraman R, Staib L, Papademetris X. MRI-TRUS Image Synthesis with Application to Image-Guided Prostate Intervention. Lecture Notes In Computer Science 2016, 9968: 157-166. DOI: 10.1007/978-3-319-46630-9_16.Peer-Reviewed Original Research
2015
Learning intervention-induced deformations for non-rigid MR-CT registration and electrode localization in epilepsy patients
Onofrey JA, Staib LH, Papademetris X. Learning intervention-induced deformations for non-rigid MR-CT registration and electrode localization in epilepsy patients. NeuroImage Clinical 2015, 10: 291-301. PMID: 26900569, PMCID: PMC4724039, DOI: 10.1016/j.nicl.2015.12.001.Peer-Reviewed Original ResearchCorrigendum to “Contour tracking in echocardiographic sequences via sparse representation and dictionary learning” [Med. Image Anal. 18 (2) (2014) 253–271]
Huang X, Dione D, Compas C, Papademetris X, Lin B, Bregasi A, Sinusas A, Staib L, Duncan J. Corrigendum to “Contour tracking in echocardiographic sequences via sparse representation and dictionary learning” [Med. Image Anal. 18 (2) (2014) 253–271]. Medical Image Analysis 2015, 22: 21. DOI: 10.1016/j.media.2015.01.006.Commentaries, Editorials and Letters
2014
Semi-supervised Learning of Nonrigid Deformations for Image Registration
Onofrey J, Staib L, Papademetris X. Semi-supervised Learning of Nonrigid Deformations for Image Registration. Lecture Notes In Computer Science 2014, 8331: 13-23. DOI: 10.1007/978-3-319-05530-5_2.Peer-Reviewed Original ResearchLarge medical image databasesSemi-supervised learning frameworkMedical image databasesStatistical deformation modelSemi-supervised learningIntensity-based registrationImage databaseLeave-one-out cross validationLearning frameworkSupervised registrationsMR datasetsImage registrationRegistration algorithmUnsupervised registrationsBrain imagesNonrigid transformationNonrigid deformationResearch communityBrain Atlas databaseVast quantitiesCross validationMR brainRegistrationLarge amountDatabaseSemi-supervised Learning of Nonrigid Deformations for Image Registration
Onofrey J, Staib L, Papademetris X. Semi-supervised Learning of Nonrigid Deformations for Image Registration. Lecture Notes In Computer Science 2014, 13-23. DOI: 10.1007/978-3-319-14104-6_2.Peer-Reviewed Original Research
2013
4-D echocardiography assessment of local myocardial strain using 3-D speckle tracking combined with shape tracking
Wong E, O'Donnell M, Thiele K, Comnas C, Huang X, Sampath S, Lin B, Pal P, Papademetris X, Dione D, Staib L, Sinusas A, Duncan J. 4-D echocardiography assessment of local myocardial strain using 3-D speckle tracking combined with shape tracking. 2013, 100-103. DOI: 10.1109/ultsym.2013.0026.Peer-Reviewed Original Research
2011
AUGMENTED INLINE-BASED NAVIGATION FOR STEREOTACTIC IMAGE GUIDED NEUROSURGERY
Joshi A, Scheinost D, Globinsky R, Vives K, Spencer D, Staib L, Papademetris X. AUGMENTED INLINE-BASED NAVIGATION FOR STEREOTACTIC IMAGE GUIDED NEUROSURGERY. 2011 IEEE International Symposium On Biomedical Imaging: From Nano To Macro 2011, 1869-1872. PMID: 23377314, PMCID: PMC3557840, DOI: 10.1109/isbi.2011.5872772.Peer-Reviewed Original ResearchNovel interactive visualization techniqueInteractive visualization techniquesImage Guided NeurosurgeryComputer-assisted surgery systemVirtual landmarksImage-guided neurosurgeryVisualization techniquesCorresponding anatomical landmarksSurgery systemKey problemNavigationSurgical toolsImagesExpert evaluationFunctional areasRealtimeLandmarksVisualizationSpecific locationsAnatomical landmarksSuch locationsRepresentationToolFeedbackUnified Framework for Development, Deployment and Robust Testing of Neuroimaging Algorithms
Joshi A, Scheinost D, Okuda H, Belhachemi D, Murphy I, Staib LH, Papademetris X. Unified Framework for Development, Deployment and Robust Testing of Neuroimaging Algorithms. Neuroinformatics 2011, 9: 69-84. PMID: 21249532, PMCID: PMC3066099, DOI: 10.1007/s12021-010-9092-8.Peer-Reviewed Original ResearchConceptsUser interface controlsUser interfaceNovel object-oriented frameworkCommand-line user interfaceGraphical user interface controlsMedical image analysisObject-oriented frameworkComplex image analysisImage analysisPlatform interoperabilitySoftware objectsReusable componentsInterface controlSource codeSuch algorithmsFramework idealMultiple platformsUnified frameworkAlgorithmRapid developmentDeploymentThorough testingPublic useFrameworkPlatform
2010
LIGHT-SENSITIVE VISUALIZATION OF MULTIMODAL DATA FOR NEUROSURGICAL APPLICATIONS
Joshi A, Papanastassiou A, Vives K, Spencer D, Staib L, Papademetris X. LIGHT-SENSITIVE VISUALIZATION OF MULTIMODAL DATA FOR NEUROSURGICAL APPLICATIONS. 2011 IEEE International Symposium On Biomedical Imaging: From Nano To Macro 2010, 2010: 884-887. PMID: 21552380, PMCID: PMC3086020, DOI: 10.1109/isbi.2010.5490128.Peer-Reviewed Original ResearchConstrained Non-rigid Registration Using Lagrange Multipliers for Application in Prostate Radiotherapy
Lu C, Chelikani S, Papademetris X, Staib L, Duncan J. Constrained Non-rigid Registration Using Lagrange Multipliers for Application in Prostate Radiotherapy. 2010, 133-138. DOI: 10.1109/cvprw.2010.5543137.Peer-Reviewed Original ResearchCorrigendum to “Constrained non-rigid registration for use in image-guided adaptive radiotherapy” [Medical Image Analysis 13 (2009) 809–817]
Greene W, Chelikani S, Purushothaman K, Knisely J, Chen Z, Papademetris X, Staib L, Duncan J. Corrigendum to “Constrained non-rigid registration for use in image-guided adaptive radiotherapy” [Medical Image Analysis 13 (2009) 809–817]. Medical Image Analysis 2010, 14: 85. DOI: 10.1016/j.media.2009.09.003.Commentaries, Editorials and Letters
2009
Unified framework for development, deployment and testing of image analysis algorithms
Joshi A, Scheinost D, Okuda H, Murphy I, Staib L, Papademetris X. Unified framework for development, deployment and testing of image analysis algorithms. The MIDAS Journal 2009 DOI: 10.54294/pq6gf6.Peer-Reviewed Original ResearchImage analysis algorithmsUser interface controlsUser interfaceAnalysis algorithmCommand-line user interfaceGraphical user interface controlsPlatform interoperabilityInterface controlSource codeComplex algorithmsSuch algorithmsNovel frameworkFramework idealMultiple platformsUnified frameworkAlgorithmRapid developmentDeploymentCustom pipelineImage analysisUsersPublic useFrameworkInteroperabilityDevelopersShape comparison using perturbing shape registration
Jiang Y, Edmiston E, Wang F, Blumberg HP, Staib LH, Papademetris X. Shape comparison using perturbing shape registration. 2015 IEEE Conference On Computer Vision And Pattern Recognition (CVPR) 2009, 2009: 683-690. PMID: 20386618, PMCID: PMC2852275, DOI: 10.1109/cvpr.2009.5206598.Peer-Reviewed Original ResearchFrom medical image computing to computer‐aided intervention: development of a research interface for image‐guided navigation
Papademetris X, DeLorenzo C, Flossmann S, Neff M, Vives KP, Spencer DD, Staib LH, Duncan JS. From medical image computing to computer‐aided intervention: development of a research interface for image‐guided navigation. International Journal Of Medical Robotics And Computer Assisted Surgery 2009, 5: 147-157. PMID: 19301361, PMCID: PMC2796181, DOI: 10.1002/rcs.241.Peer-Reviewed Original ResearchConceptsResearch interfaceNavigation systemApplication programming interfaceDual computer systemComputer-aided interventionsSurgery navigation systemImage-guided navigation systemProgramming interfaceClient programNetwork interfacesMedical imagesImage-guided navigationResearch softwareReal timeViable solutionSoftwareImage analysis softwareTool positionVersatile linkAnalysis softwareImagesInterfaceNavigationSystemResearch techniques
2008
Constrained Non-rigid Registration (CNRR): An Image Guided Method to Update Prostate External Beam Radiotherapy (EBRT) Plans
Greene W, Chelikani S, Purushothaman K, Chen Z, Knisely J, Staib L, Papademetris X, Duncan J. Constrained Non-rigid Registration (CNRR): An Image Guided Method to Update Prostate External Beam Radiotherapy (EBRT) Plans. International Journal Of Radiation Oncology • Biology • Physics 2008, 72: s580. DOI: 10.1016/j.ijrobp.2008.06.172.Peer-Reviewed Original ResearchA Constrained Non-rigid Registration Algorithm for Use in Prostate Image-Guided Radiotherapy
Greene W, Chelikani S, Purushothaman K, Chen Z, Knisely J, Staib L, Papademetris X, Duncan J. A Constrained Non-rigid Registration Algorithm for Use in Prostate Image-Guided Radiotherapy. Lecture Notes In Computer Science 2008, 11: 780-788. PMID: 18979817, PMCID: PMC2790815, DOI: 10.1007/978-3-540-85988-8_93.Peer-Reviewed Original ResearchMeSH KeywordsAlgorithmsArtificial IntelligenceHumansImaging, Three-DimensionalMalePattern Recognition, AutomatedProstatic NeoplasmsRadiographic Image EnhancementRadiographic Image Interpretation, Computer-AssistedRadiotherapy, Computer-AssistedReproducibility of ResultsSensitivity and SpecificitySubtraction TechniqueTomography, X-Ray ComputedConceptsTreatment planProstate image-guided radiotherapyOriginal treatment planRadiation dosageImage-guided radiotherapyTreatment daysRadiotherapy treatment plansCritical organsDifferent patientsPatient dataDifferent treatment daysBladderRectumProstateFemurBone motionCT imagesDosageReal patient dataPatientsRadiotherapy
2007
Nonrigid Intraoperative Cortical Surface Tracking Using Game Theory
DeLorenzo C, Papademetris X, Staib L, Vives K, Spencer D, Duncan J. Nonrigid Intraoperative Cortical Surface Tracking Using Game Theory. 2015 IEEE International Conference On Computer Vision (ICCV) 2007, 1-8. DOI: 10.1109/iccv.2007.4409135.Peer-Reviewed Original ResearchSurface deformationPreoperative brain imagesCortical surface deformationSurface trackingDeformation estimationStereo vision systemBrain deformationDeformationBiomechanical modelIntraoperative brainCalibration errorsPhysical processesVision systemCamera calibrationStereo systemImage acquisitionUsing Game TheoryGame theory
2005
BioImage Suite: An integrated medical image analysis suite
Papademetris X, Jackowski M, Rajeevan N, Constable R, Staib L. BioImage Suite: An integrated medical image analysis suite. Insight Journal 2005 DOI: 10.54294/vb5z20.Chapters
2003
Computing 3D Non-rigid Brain Registration Using Extended Robust Point Matching for Composite Multisubject fMRI Analysis
Papademetris X, Jackowski A, Schultz R, Staib L, Duncan J. Computing 3D Non-rigid Brain Registration Using Extended Robust Point Matching for Composite Multisubject fMRI Analysis. Lecture Notes In Computer Science 2003, 2879: 788-795. DOI: 10.1007/978-3-540-39903-2_96.Peer-Reviewed Original ResearchRobust Point MatchingIntensity-based registrationLarge point setsPoint matchingGreater computational efficiencyComputational efficiencyRobust pointSuperior performancePoint setsMagnetic resonance imagesBrain registrationActivation mapsFunctional magnetic resonance imagesSuccessful applicationRegistrationResonance imagesAlgorithmMatchingSpecificationMethodologyImagesRobustnessFrameworkSpecific areasSet