2024
Consistent frontal-limbic-occipital connections in distinguishing treatment-resistant and non-treatment-resistant schizophrenia
Zhang Y, Gao S, Liang C, Bustillo J, Kochunov P, Turner J, Calhoun V, Wu L, Fu Z, Jiang R, Zhang D, Jiang J, Wu F, Peng T, Xu X, Qi S. Consistent frontal-limbic-occipital connections in distinguishing treatment-resistant and non-treatment-resistant schizophrenia. NeuroImage Clinical 2024, 45: 103726. PMID: 39700898, PMCID: PMC11721508, DOI: 10.1016/j.nicl.2024.103726.Peer-Reviewed Original ResearchNon-treatment-resistant schizophreniaTreatment-resistant schizophreniaFunctional connectivityDiagnosis of SZHealthy controlsFrontal-parietalResting-state functional connectivityAutomated anatomical labelingDysfunctional brain connectivityBrain functional connectivityAffiliated Brain Hospital of Nanjing Medical UniversityFrontal limbBrain connectivitySchizophreniaMedication dosageTreatment resistanceNeural pathwaysNanjing Medical UniversityDisease progressionMedical UniversityClinical practiceSpecific biomarkersDiagnosisAnatomical labelingExploring nonlinear dynamics in brain functionality through phase portraits and fuzzy recurrence plots
Li Q, Calhoun V, Pham T, Iraji A. Exploring nonlinear dynamics in brain functionality through phase portraits and fuzzy recurrence plots. Chaos An Interdisciplinary Journal Of Nonlinear Science 2024, 34: 103123. PMID: 39393183, DOI: 10.1063/5.0203926.Peer-Reviewed Original ResearchConceptsFuzzy recurrence plotsPhase portraitsComplex brain networksConnectivity descriptorsLow-dimensional dynamicsField of statistical physicsNonlinear dynamicsNeural mass modelMass modelRecurrence plotsStatistical physicsNeural time seriesFunctional connectivityLimit cycle attractorNonlinear phenomenaHidden informationComplex networksLatent informationPhase trajectoriesHigh-dimensionalDynamical theoryBrain functional connectivityBrain connectivityBrain networksNeural dynamicsCommon and unique brain aging patterns between females and males quantified by large‐scale deep learning
Du Y, Yuan Z, Sui J, Calhoun V. Common and unique brain aging patterns between females and males quantified by large‐scale deep learning. Human Brain Mapping 2024, 45: e70005. PMID: 39225381, PMCID: PMC11369911, DOI: 10.1002/hbm.70005.Peer-Reviewed Original ResearchConceptsBrain functional changesFunctional connectivityCognitive controlBrain agingBrain functionPatterns of brain agingResting-state brain functional connectivityBrain functional interactionsBrain functional connectivityHuman brain functionBrain aging patternsGender commonalitiesAge-related changesDeep learningHealthy participantsNormal agingNegative connectionFunctional changesBrainPositive connectionDeep learning modelsFunctional domainsAge effectsFunctional interactionsCross-validation schemeAssociation between the oral microbiome and brain resting state connectivity in schizophrenia
Lin D, Fu Z, Liu J, Perrone-Bizzozero N, Hutchison K, Bustillo J, Du Y, Pearlson G, Calhoun V. Association between the oral microbiome and brain resting state connectivity in schizophrenia. Schizophrenia Research 2024, 270: 392-402. PMID: 38986386, DOI: 10.1016/j.schres.2024.06.045.Peer-Reviewed Original ResearchOral microbiomeMicrobial speciesArea under curveResting-state functional magnetic resonance imagingFunctional magnetic resonance imagingMicrobial 16S rRNA sequencingBrain circuit dysfunctionHealthy controlsBrain functional connectivity alterationsFunctional connectivity alterationsFunctional neuroimaging techniquesHypothalamic-pituitary-adrenal axisBrain functional connectivityFunctional network connectivityBrain functional activityBrain functional network connectivityHealthy control subjectsNeurotransmitter signaling pathwaysBeta diversityMicrobiome communitiesOral microbiome dysbiosisRRNA sequencingCircuit dysfunctionConnectivity alterationsSchizophreniaBeyond Artifacts: Rethinking Motion-Related Signals in Resting-State fMRI Analysis
Kumar S, Kinsey S, Jensen K, Bajracharya P, Calhoun V, Iraji A. Beyond Artifacts: Rethinking Motion-Related Signals in Resting-State fMRI Analysis. Annual International Conference Of The IEEE Engineering In Medicine And Biology Society (EMBC) 2024, 00: 1-4. PMID: 40040138, DOI: 10.1109/embc53108.2024.10782518.Peer-Reviewed Original ResearchConceptsFunctional network connectivityBOLD time seriesImpact of head motionHead motion dataLarge-scale brain networksIntrinsic brain functional connectivityResting-state functional magnetic resonance imagingFunctional magnetic resonance imagingFunctional brain connectivityResting-state fMRI analysisRsfMRI dataBOLD fMRIHead motionBrain functional connectivityHealthy controlsBOLD signalBrain connectivityBrain networksMotion dataFMRI analysisFunctional connectivityClinical populationsMotion-related signalsClinical implicationsBOLDA Deep Biclustering Framework for Brain Network Analysis
Rahaman A, Fu Z, Iraji A, Calhoun V. A Deep Biclustering Framework for Brain Network Analysis. 2024, 00: 5075-5085. DOI: 10.1109/cvprw63382.2024.00514.Peer-Reviewed Original ResearchDeep neural networksBrain networksState-of-the-artFunctional connectivityNeural networkFeature dimensionsBiclustering frameworkSuboptimal solutionBrain functional connectivityNeuroimaging datasetsBrain network analysisHuman brain dynamicsNetworkNeurobiological mechanismsBiclustering methodsNeural systemsAssigned probability distributionsProbability distributionBrain componentsBrain dynamicsCluster generalizationBiclusteringBrainFrameworkBN edgesA Method to Estimate Longitudinal Change Patterns in Functional Network Connectivity of the Developing Brain Relevant to Psychiatric Problems, Cognition, and Age
Saha R, Saha D, Rahaman A, Fu Z, Liu J, Calhoun V. A Method to Estimate Longitudinal Change Patterns in Functional Network Connectivity of the Developing Brain Relevant to Psychiatric Problems, Cognition, and Age. Brain Connectivity 2024, 14: 130-140. PMID: 38308475, PMCID: PMC10954605, DOI: 10.1089/brain.2023.0040.Peer-Reviewed Original ResearchFunctional network connectivityFunctional connectivityPsychiatric problemsFunctional network connectivity matricesNetwork connectivityMultivariate patternsWhole-brain functional networksIntrinsic functional connectivityPattern of functional changesBrain functional connectivityIntrinsic functional relationshipLongitudinal changesAdolescent brainAge-related changesBrain networksStudy developmental changesScanning sessionBrain functionAssociated with longitudinal changesCognitive scoresDevelopmental changesBrain developmentFunctional changesCognitionLongitudinal change patternsA Nearest Neighbor Propagation-Based Partial Label Learning Method for Identifying Biotypes of Psychiatric Disorders
Du Y, Li B, Niu J, Calhoun V. A Nearest Neighbor Propagation-Based Partial Label Learning Method for Identifying Biotypes of Psychiatric Disorders. IFMBE Proceedings 2024, 104: 301-308. DOI: 10.1007/978-3-031-51485-2_32.Peer-Reviewed Original ResearchFunctional magnetic resonance imagingPsychiatric disordersSchizoaffective disorderFunctional connectivityFunctional magnetic resonance imaging dataDiagnosis of psychiatric disordersSchizoaffective disorder patientsBrain functional connectivityHealthy controlsIncrease diagnostic reliabilityBipolar disorderSZ patientsNeuroimaging measuresPartial label learning methodDisordersSchizophreniaMagnetic resonance imagingNeuroscience fieldValid informationLabel learningDiagnostic reliabilityLearning methodsResonance imagingPartial label learningExtract valid information
2023
Triple Interactions Between the Environment, Brain, and Behavior in Children: An ABCD Study
Zhi D, Jiang R, Pearlson G, Fu Z, Qi S, Yan W, Feng A, Xu M, Calhoun V, Sui J. Triple Interactions Between the Environment, Brain, and Behavior in Children: An ABCD Study. Biological Psychiatry 2023, 95: 828-838. PMID: 38151182, PMCID: PMC11006588, DOI: 10.1016/j.biopsych.2023.12.019.Peer-Reviewed Original ResearchFunctional network connectivityCognitive abilitiesABCD studyMental healthLongitudinal predictionBehavioral developmentSleep problemsBrain functional network connectivityHigher cognitive abilitiesDefault mode networkChildren's behavioral developmentUnique protective factorsBrain functional connectivityCognitive controlTriple interactionFamily conflictMode networkMediation analysisFunctional connectivityInfluence behaviorFunctional networksProtective factorsSchool environmentChildhood developmentEnvironmental exposuresMultimodal Fusion of Functional and Structural Data to Recognize Longitudinal Change Patterns in the Adolescent Brain
Saha R, Saha D, Fu Z, Silva R, Calhoun V. Multimodal Fusion of Functional and Structural Data to Recognize Longitudinal Change Patterns in the Adolescent Brain. 2023, 00: 1-5. DOI: 10.1109/bhi58575.2023.10313489.Peer-Reviewed Original ResearchFunctional network connectivityAdolescent brainPotential gender-related differencesBilateral sensorimotor cortexStructural magnetic resonance imagingMagnetic resonance imagingBrain functional connectivityGender-related differencesSensorimotor cortexLongitudinal change patternsGrey matter dataResonance imagingJoint independent component analysisLongitudinal changesFunctional connectivityBrain developmentBrain functionEntire brainBrain connectivityBrain connectionsBrain analysisBrainSensorimotor domainModalitiesSMRI dataDeep learning with explainability for characterizing age-related intrinsic differences in dynamic brain functional connectivity
Qiao C, Gao B, Liu Y, Hu X, Hu W, Calhoun V, Wang Y. Deep learning with explainability for characterizing age-related intrinsic differences in dynamic brain functional connectivity. Medical Image Analysis 2023, 90: 102941. PMID: 37683445, DOI: 10.1016/j.media.2023.102941.Peer-Reviewed Original ResearchFunctional connectivityBrain functional connectivityBrain networksDynamic brain functional connectivityDeep networksFunctional brain networksInformation processing abilityBrain development studiesEmotional processingDeep learning approachFeature selection strategyMachine learning modelsProcessing abilityBrain developmentCognitive activityDeep learningAccuracy-orientedSound processingBrainDevelopmental patternsLearning approachLearning modelsMental regulationSelection strategyInformation transmission mechanism
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