2023
Multiscale geometric and topological analyses for characterizing and predicting immune responses from single cell data
Venkat A, Bhaskar D, Krishnaswamy S. Multiscale geometric and topological analyses for characterizing and predicting immune responses from single cell data. Trends In Immunology 2023, 44: 551-563. PMID: 37301677, DOI: 10.1016/j.it.2023.05.003.Peer-Reviewed Original ResearchCell cycle controls long-range calcium signaling in the regenerating epidermis
Moore J, Bhaskar D, Gao F, Matte-Martone C, Du S, Lathrop E, Ganesan S, Shao L, Norris R, Sanz N, Annusver K, Kasper M, Cox A, Hendry C, Rieck B, Krishnaswamy S, Greco V. Cell cycle controls long-range calcium signaling in the regenerating epidermis. Journal Of Cell Biology 2023, 222: e202302095. PMID: 37102999, PMCID: PMC10140546, DOI: 10.1083/jcb.202302095.Peer-Reviewed Original ResearchA Flow Artist for High-Dimensional Cellular Data
MacDonald K, Bhaskar D, Thampakkul G, Nguyen N, Zhang J, Perlmutter M, Adelstein I, Krishnaswamy S. A Flow Artist for High-Dimensional Cellular Data. 2023, 00: 1-6. DOI: 10.1109/mlsp55844.2023.10285942.Peer-Reviewed Original ResearchWire Before You Walk
Asmara T, Bhaskar D, Adelstein I, Krishnaswamy S, Perlmutter M. Wire Before You Walk. 2023, 00: 714-716. DOI: 10.1109/ieeeconf59524.2023.10477089.Peer-Reviewed Original Research
2022
Transformer-based protein generation with regularized latent space optimization
Castro E, Godavarthi A, Rubinfien J, Givechian K, Bhaskar D, Krishnaswamy S. Transformer-based protein generation with regularized latent space optimization. Nature Machine Intelligence 2022, 4: 840-851. DOI: 10.1038/s42256-022-00532-1.Peer-Reviewed Original ResearchMolecular Graph Generation via Geometric Scattering
Bhaskar D, Grady J, Castro E, Perlmutter M, Krishnaswamy S. Molecular Graph Generation via Geometric Scattering. 2022, 00: 1-6. DOI: 10.1109/mlsp55214.2022.9943379.Peer-Reviewed Original Research
2024
Learnable Filters for Geometric Scattering Modules
Tong A, Wenkel F, Bhaskar D, Macdonald K, Grady J, Perlmutter M, Krishnaswamy S, Wolf G. Learnable Filters for Geometric Scattering Modules. IEEE Transactions On Signal Processing 2024, 72: 2939-2952. DOI: 10.1109/tsp.2024.3378001.Peer-Reviewed Original ResearchGraph neural networksGraph classification benchmarksEncode graph structureData exploration tasksGeometric scattering transformGraph wavelet filtersClassification benchmarksLearned representationsLearnable filtersLearning parametersGraph structureNeural networkExploration tasksWavelet filtersBand-pass featureBiochemical domainNetworkAdaptive tuningWaveletGraphPredictive performanceScattering modulationScattering transformMathematical propertiesFilterCorrection: Cell cycle controls long-range calcium signaling in the regenerating epidermis
Moore J, Bhaskar D, Gao F, Matte-Martone C, Du S, Lathrop E, Ganesan S, Shao L, Norris R, Sanz N, Annusver K, Kasper M, Cox A, Hendry C, Rieck B, Krishnaswamy S, Greco V. Correction: Cell cycle controls long-range calcium signaling in the regenerating epidermis. Journal Of Cell Biology 2024, 223: e20230209503052024c. PMID: 38477880, PMCID: PMC10938063, DOI: 10.1083/jcb.20230209503052024c.Peer-Reviewed Original Research