2024
Whole genome assembly and annotation of the King Angelfish (Holacanthus passer) gives insight into the evolution of marine fishes of the Tropical Eastern Pacific
Gatins R, Arias C, Sánchez C, Bernardi G, De León L. Whole genome assembly and annotation of the King Angelfish (Holacanthus passer) gives insight into the evolution of marine fishes of the Tropical Eastern Pacific. Gigabyte 2024, 2024: 1-18. PMID: 38550358, PMCID: PMC10973836, DOI: 10.46471/gigabyte.115.Peer-Reviewed Original ResearchBenchmarking Universal Single-Copy OrthologsTropical eastern PacificGenome assemblyPopulation expansionMarine fishUniversal Single-Copy OrthologsAnnotated genome assemblyGenome assembly sizeSingle-copy orthologsWhole-genome assemblyProtein-coding genesIsthmus of PanamaContig N50Illumina readsNuclear genomeGenomic resourcesDemographic historyRepetitive elementsMolecular resourcesHolacanthus passerLocal adaptationEastern PacificGenomeAngelfishMarine organisms
2023
A high-quality reference genome of the kelp surfperch, Brachyistius frenatus (Embiotocidae), a wide-ranging Eastern Pacific reef fish with no pelagic larval stage
Toy J, Bernardi G. A high-quality reference genome of the kelp surfperch, Brachyistius frenatus (Embiotocidae), a wide-ranging Eastern Pacific reef fish with no pelagic larval stage. Journal Of Heredity 2023, 114: 404-409. PMID: 36790952, PMCID: PMC10287144, DOI: 10.1093/jhered/esad009.Peer-Reviewed Original ResearchConceptsMolecular resourcesLocal adaptationCombination of short-readInvestigations of local adaptationLevel of syntenyStudy of speciationPelagic larval stageDispersive larval stageLarval stageContig N50Short readsGene flowPhylogenetic positionGenomic potentialEmbiotoca jacksoniReef fishesWild populationsSurfperchMarine fishContigsGenomeExcellent modelEmbiotocidaeFamily EmbiotocidaeRecreational fisheries
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