2024
Local-structure-preservation and redundancy-removal-based feature selection method and its application to the identification of biomarkers for schizophrenia
Xing Y, Pearlson G, Kochunov P, Calhoun V, Du Y. Local-structure-preservation and redundancy-removal-based feature selection method and its application to the identification of biomarkers for schizophrenia. NeuroImage 2024, 299: 120839. PMID: 39251116, PMCID: PMC11491165, DOI: 10.1016/j.neuroimage.2024.120839.Peer-Reviewed Original ResearchConceptsSelection methodClassification accuracy gainsGraph-based regularizationHigh-dimensional dataFeature selection methodLocal structural informationSparse regularizationAblation studiesFeature subsetPublic datasetsFeature selectionClassification accuracyExperimental evaluationAccuracy gainsSelection techniquesNetwork connectivityData transformationSuperior performanceDatasetConvergence analysisStructural informationClassificationRegularizationFeaturesDisorder prediction
2023
Circular-SWAT for deep learning based diagnostic classification of Alzheimer's disease: application to metabolome data
Jo T, Kim J, Bice P, Huynh K, Wang T, Arnold M, Meikle P, Giles C, Kaddurah-Daouk R, Saykin A, Nho K, Kaddurah-Daouk R, Kueider-Paisley A, Doraiswamy P, Blach C, Moseley A, Thompson W, St John-Williams L, Mahmoudiandehkhordi S, Tenenbaum J, Welsh-Balmer K, Plassman B, Saykin A, Nho K, Risacher S, Kastenmüller G, Arnold M, Han X, Baillie R, Knight R, Dorrestein P, Brewer J, Mayer E, Labus J, Baldi P, Gupta A, Fiehn O, Barupal D, Meikle P, Mazmanian S, Rader D, Kling M, Shaw L, Trojanowski J, van Duijin C, Nevado-Holgado A, Bennett D, Krishnan R, Keshavarzian A, Vogt R, Ikram A, Hankemeier T, Thiele I, Price N, Funk C, Baloni P, Jia W, Wishart D, Brinton R, Chang R, Farrer L, Au R, Qiu W, Würtz P, Koal T, Mangravite L, Krumsiek J, Suhre K, Newman J, Moreno H, Foroud T, Sacks F, Jansson J, Weiner M, Aisen P, Petersen R, Jack C, Jagust W, Trojanowki J, Toga A, Beckett L, Green R, Saykin A, Morris J, Perrin R, Shaw L, Khachaturian Z, Carrillo M, Potter W, Barnes L, Bernard M, Gonzalez H, Ho C, Hsiao J, Jackson J, Masliah E, Masterman D, Okonkwo O, Perrin R, Ryan L, Silverberg N, Fleisher A, Sacrey D, Fockler J, Conti C, Veitch D, Neuhaus J, Jin C, Nosheny R, Ashford M, Flenniken D, Kormos A, Montine T, Rafii M, Raman R, Jimenez G, Donohue M, Gessert D, Salazar J, Zimmerman C, Cabrera Y, Walter S, Miller G, Coker G, Clanton T, Hergesheimer L, Smith S, Adegoke O, Mahboubi P, Moore S, Pizzola J, Shaffer E, Sloan B, Harvey D, Forghanian-Arani A, Borowski B, Ward C, Schwarz C, Jones D, Gunter J, Kantarci K, Senjem M, Vemuri P, Reid R, Fox N, Malone I, Thompson P, Thomopoulos S, Nir T, Jahanshad N, DeCarli C, Knaack A, Fletcher E, Tosun-Turgut D, Chen S, Choe M, Crawford K, Yushkevich P, Das S, Koeppe R, Reiman E, Chen K, Mathis C, Landau S, Cairns N, Householder E, Franklin E, Bernhardt H, Taylor-Reinwald L, Korecka M, Figurski M, Neu S, Nho K, Risacher S, Apostolova L, Shen L, Foroud T, Nudelman K, Faber K, Wilmes K, Thal L, Silbert L, Lind B, Crissey R, Kaye J, Carter R, Dolen S, Quinn J, Schneider L, Pawluczyk S, Becerra M, Teodoro L, Dagerman K, Spann B, Brewer J, Vanderswag H, Ziolkowski J, Heidebrink J, Zbizek-Nulph L, Lord J, Mason S, Albers C, Knopman D, Johnson K, Villanueva-Meyer J, Pavlik V, Pacini N, Lamb A, Kass J, Doody R, Shibley V, Chowdhury M, Rountree S, Dang M, Stern Y, Honig L, Mintz A, Ances B, Winkfield D, Carroll M, Stobbs-Cucchi G, Oliver A, Creech M, Mintun M, Schneider S, Geldmacher D, Love M, Griffith R, Clark D, Brockington J, Marson D, Grossman H, Goldstein M, Greenberg J, Mitsis E, Shah R, Lamar M, Samuels P, Duara R, Greig-Custo M, Rodriguez R, Albert M, Onyike C, Farrington L, Rudow S, Brichko R, Kielb S, Smith A, Raj B, Fargher K, Sadowski M, Wisniewski T, Shulman M, Faustin A, Rao J, Castro K, Ulysse A, Chen S, Sheikh M, Singleton-Garvin J, Doraiswamy P, Petrella J, James O, Wong T, Borges-Neto S, Karlawish J, Wolk D, Vaishnavi S, Clark C, Arnold S, Smith C, Jicha G, Raslau F, Lopez O, Oakley M, Simpson D, Porsteinsson A, Martin K, Kowalski N, Keltz M, Goldstein B, Makino K, Ismail M, Brand C, Thai G, Pierce A, Yanez B, Sosa E, Witbracht M, Kelley B, Nguyen T, Womack K, Mathews D, Quiceno M, Levey A, Lah J, Hajjar I, Cellar J, Burns J, Swerdlow R, Brooks W, Silverman D, Kremen S, Apostolova L, Tingus K, Lu P, Bartzokis G, Woo E, Teng E, Graff-Radford N, Parfitt F, Poki-Walker K, Farlow M, Hake A, Matthews B, Brosch J, Herring S, van C, Mecca A, Good S, MacAvoy M, Carson R, Varma P, Chertkow H, Vaitekunis S, Hosein C, Black S, Stefanovic B, Heyn C, Hsiung G, Kim E, Mudge B, Sossi V, Feldman H, Assaly M, Finger E, Pasternak S, Rachinsky I, Kertesz A, Drost D, Rogers J, Grant I, Muse B, Rogalski E, Robson J, Mesulam M, Kerwin D, Wu C, Johnson N, Lipowski K, Weintraub S, Bonakdarpour B, Pomara N, Hernando R, Sarrael A, Rosen H, Miller B, Perry D, Turner R, Johnson K, Reynolds B, MCCann K, Poe J, Sperling R, Johnson K, Marshall G, Yesavage J, Taylor J, Chao S, Coleman J, White J, Lane B, Rosen A, Tinklenberg J, Belden C, Atri A, Clark K, Zamrini E, Sabbagh M, Killiany R, Stern R, Mez J, Kowall N, Budson A, Obisesan T, Ntekim O, Wolday S, Khan J, Nwulia E, Nadarajah S, Lerner A, Ogrocki P, Tatsuoka C, Fatica P, Maillard P, Olichney J, Carmichael O, Bates V, Capote H, Rainka M, Borrie M, Lee T, Bartha R, Johnson S, Asthana S, Carlsson C, Perrin A, Burke A, Scharre D, Kataki M, Tarawneh R, Hart D, Zimmerman E, Celmins D, Miller D, BolesPonto L, Smith K, Koleva H, Shim H, Nam K, Schultz S, Williamson J, Craft S, Cleveland J, Yang M, Sink K, Ott B, Drake J, Tremont G, Daiello L, Drake J, Ritter A, Bernick C, Munic D, O'Connelll A, Mintzer J, Wiliams A, Masdeu J, Shi J, Garcia A, Newhouse P, Potkin S, Salloway S, Malloy P, Correia S, Kittur S, Pearlson G, Blank K, Anderson K, Flashman L, Seltzer M, Hynes M, Santulli R, Relkin N, Chiang G, Lee A, Lin M, Ravdin L, Petersen R, Neylan T, Grafman J, Danowski S, Nguyen-Barrera C, Hayes J, Finley S, Bernstein M, Senjem M, Foster N, Kim S, Sood A, Blanchard K, Fleischman D, Arfanakis K, Varon D, Greig M, Petrella J, Goldstein B, Martin K, Reist C, Sadowsky C, Martinez W, Villena T, Rosen H, Marshall G, Peskind E, Petrie E, Li G, Mackin S, Jimenez-Maggiora G, Drake E, Donohue M, Nelson C, Bickford D, Butters M, Zmuda M, Reyes D, Faber K, Nudelman K, Au Y, Scherer K, Catalinotto D, Stark S, Ong E, Fernandez D. Circular-SWAT for deep learning based diagnostic classification of Alzheimer's disease: application to metabolome data. EBioMedicine 2023, 97: 104820. PMID: 37806288, PMCID: PMC10579282, DOI: 10.1016/j.ebiom.2023.104820.Peer-Reviewed Original Research
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