2024
Cascaded multi-path shortcut diffusion model for medical image translation
Zhou Y, Chen T, Hou J, Xie H, Dvornek N, Zhou S, Wilson D, Duncan J, Liu C, Zhou B. Cascaded multi-path shortcut diffusion model for medical image translation. Medical Image Analysis 2024, 98: 103300. PMID: 39226710, DOI: 10.1016/j.media.2024.103300.Peer-Reviewed Original ResearchGenerative adversarial networkMedical image translationImage translationState-of-the-art methodsImage-to-image translationMedical image datasetsImage translation tasksImage-to-imageState-of-the-artMedical image processingHigh-quality translationsUncertainty estimationCascaded pipelineAdversarial networkImage datasetsSub-tasksTranslation qualityTranslation performanceTranslation tasksImage processingTranslation resultsDM methodPrior imageRobust performanceExperimental resultsSpectral Brain Graph Neural Network for Prediction of Anxiety in Children with Autism Spectrum Disorder
Duan P, Dvornek N, Wang J, Eilbott J, Du Y, Sukhodolsky D, Duncan J. Spectral Brain Graph Neural Network for Prediction of Anxiety in Children with Autism Spectrum Disorder. 2024, 00: 1-5. DOI: 10.1109/isbi56570.2024.10635753.Peer-Reviewed Original ResearchGraph neural networksFunctional magnetic resonance imagingAutism spectrum disorderNeural networkCurrent graph neural networksSpectrum disorderMASC-2Spectral analysis algorithmAnalysis algorithmGraph-based networkMultidimensional Anxiety ScaleFast Fourier transformPredictive of anxietyDaily anxiety levelsExtract hidden informationBrain functional networksPower spectrum densityNode featuresNetwork performanceComorbid anxietyBrain mechanismsHidden informationCorrelated featuresAnxiety ScaleTotal score
2021
BrainGNN: Interpretable Brain Graph Neural Network for fMRI Analysis
Li X, Zhou Y, Dvornek N, Zhang M, Gao S, Zhuang J, Scheinost D, Staib LH, Ventola P, Duncan JS. BrainGNN: Interpretable Brain Graph Neural Network for fMRI Analysis. Medical Image Analysis 2021, 74: 102233. PMID: 34655865, PMCID: PMC9916535, DOI: 10.1016/j.media.2021.102233.Peer-Reviewed Original ResearchConceptsFunctional magnetic resonance imagesGraph neural network frameworkMedical image analysisGraph neural networkGraph convolutional layersNeural network frameworkDifferent evaluation metricsSpecific task statesIndependent fMRI datasetsPooling layerConvolutional layersConsistency lossNetwork frameworkNeural networkFMRI datasetsImage analysis methodEvaluation metricsDetection resultsBrain graphsSubjects releaseROI selectionImage analysisCognitive stimuliTask statesFMRI analysis
2018
Prediction of Pivotal Response Treatment Outcome with Task FMRI Using Random Forest and Variable Selection
Zhuang J, Dvornek NC, Li X, Yang D, Ventola P, Duncan JS. Prediction of Pivotal Response Treatment Outcome with Task FMRI Using Random Forest and Variable Selection. 2011 IEEE International Symposium On Biomedical Imaging: From Nano To Macro 2018, 2018: 97-100. PMID: 33014282, PMCID: PMC7532925, DOI: 10.1109/isbi.2018.8363531.Peer-Reviewed Original ResearchCombining Phenotypic and Resting-State FMRI Data for Autism Classification with Recurrent Neural Networks
Dvornek NC, Ventola P, Duncan JS. Combining Phenotypic and Resting-State FMRI Data for Autism Classification with Recurrent Neural Networks. 2011 IEEE International Symposium On Biomedical Imaging: From Nano To Macro 2018, 2018: 725-728. PMID: 30288208, PMCID: PMC6166875, DOI: 10.1109/isbi.2018.8363676.Peer-Reviewed Original ResearchAutism spectrum disorderRecurrent neural networkNeural networkAutism Brain Imaging Data ExchangeSingle deep learning frameworkHeterogeneity of ASDFunctional magnetic resonance imagingDeep learning frameworkResting-state fMRI dataResting-state functional magnetic resonance imagingBetter classification accuracyAutism classificationSpectrum disorderData exchangeLearning frameworkFMRI dataClassification accuracyCross-validation frameworkChallenging taskStraightforward taskPrior workNetworkSuch dataRsfMRITask2-Channel Convolutional 3D Deep Neural Network (2CC3D) for FMRI Analysis: ASD Classification and Feature Learning
Li X, Dvornek NC, Papademetris X, Zhuang J, Staib LH, Ventola P, Duncan JS. 2-Channel Convolutional 3D Deep Neural Network (2CC3D) for FMRI Analysis: ASD Classification and Feature Learning. 2011 IEEE International Symposium On Biomedical Imaging: From Nano To Macro 2018, 2018: 1252-1255. PMID: 32983370, PMCID: PMC7519578, DOI: 10.1109/isbi.2018.8363798.Peer-Reviewed Original ResearchConvolutional neural networkNeural networkCNN convolutional layerSpatial featuresASD classificationDeep neural networksMean F-scoreTraditional machineFeature learningConvolutional layersInput formatF-scoreClassification modelTemporal informationNetworkWindow parametersImagesClassificationConvolutionalTemporal statisticsMachineLearningFeaturesFormatScheme
2017
Identifying Autism from Resting-State fMRI Using Long Short-Term Memory Networks
Dvornek NC, Ventola P, Pelphrey KA, Duncan JS. Identifying Autism from Resting-State fMRI Using Long Short-Term Memory Networks. Lecture Notes In Computer Science 2017, 10541: 362-370. PMID: 29104967, PMCID: PMC5669262, DOI: 10.1007/978-3-319-67389-9_42.Peer-Reviewed Original ResearchFunctional magnetic resonance imagingAutism spectrum disorderLong short-term memoryAutism Brain Imaging Data Exchange IResting-state functional connectivity measuresShort-term memoryLong short-term memory networkResting-state functional magnetic resonance imagingShort-term memory networkFunctional connectivity measuresPotential functional networksTypical controlsSpectrum disorderASD biomarkersMemory networkRecurrent neural networkExchange IMulti-site dataFMRI dataFunctional networksLSTM modelClassification of individualsCross-validation frameworkConnectivity measuresObjective biomarkers
2016
Brain responses to biological motion predict treatment outcome in young children with autism
Yang D, Pelphrey KA, Sukhodolsky DG, Crowley MJ, Dayan E, Dvornek NC, Venkataraman A, Duncan J, Staib L, Ventola P. Brain responses to biological motion predict treatment outcome in young children with autism. Translational Psychiatry 2016, 6: e948-e948. PMID: 27845779, PMCID: PMC5314125, DOI: 10.1038/tp.2016.213.Peer-Reviewed Original ResearchConceptsAutism spectrum disorderYoung childrenSocial information processingMultivariate pattern analysisMotivation/rewardBiological motionCore deficitComplex neurodevelopmental disorderBrain responsesResponse treatmentSpectrum disorderNeurobiological markersNeural predictorsInformation processingBehavioral interventionsIndividual childrenNeurodevelopmental disordersCurrent findingsNeural circuitsBehavioral deficitsEarly childhoodChildrenUnsuccessful interventionsNeurobiomarkersPattern analysisPivotal response treatment prompts a functional rewiring of the brain among individuals with autism spectrum disorder
Venkataraman A, Yang D, Dvornek N, Staib LH, Duncan JS, Pelphrey KA, Ventola P. Pivotal response treatment prompts a functional rewiring of the brain among individuals with autism spectrum disorder. Neuroreport 2016, 27: 1081-1085. PMID: 27532879, PMCID: PMC5007196, DOI: 10.1097/wnr.0000000000000662.Peer-Reviewed Original ResearchConceptsPivotal Response TreatmentAutism spectrum disorderOccipital-temporal cortexAttentional systemResponse treatmentSpectrum disorderOrbitofrontal cortexPosterior cingulateHigh-level objectsBehavioral interventionsLearning mechanismPerception shiftProcessing areasNeural circuitsFunctional rewiringCortexTreatment regimenAutismInterventionNovel Bayesian frameworkCingulateFunctional changesIndividualsDisordersObjects
2012
Tracking Metastatic Brain Tumors in Longitudinal Scans via Joint Image Registration and Labeling
Chitphakdithai N, Chiang VL, Duncan JS. Tracking Metastatic Brain Tumors in Longitudinal Scans via Joint Image Registration and Labeling. Lecture Notes In Computer Science 2012, 7570: 124-136. PMID: 31187098, PMCID: PMC6559745, DOI: 10.1007/978-3-642-33555-6_11.Peer-Reviewed Original Research
2011
REGISTRATION OF BRAIN RESECTION MRI WITH INTENSITY AND LOCATION PRIORS
Chitphakdithai N, Vives KP, Duncan JS. REGISTRATION OF BRAIN RESECTION MRI WITH INTENSITY AND LOCATION PRIORS. 2011 IEEE International Symposium On Biomedical Imaging: From Nano To Macro 2011, 1: 1520-1523. PMID: 30774752, PMCID: PMC6376974, DOI: 10.1109/isbi.2011.5872690.Peer-Reviewed Original ResearchNon-rigid Registration of Longitudinal Brain Tumor Treatment MRI
Chitphakdithai N, Chiang VL, Duncan JS. Non-rigid Registration of Longitudinal Brain Tumor Treatment MRI. Annual International Conference Of The IEEE Engineering In Medicine And Biology Society (EMBC) 2011, 2011: 4893-4896. PMID: 22255435, PMCID: PMC3753806, DOI: 10.1109/iembs.2011.6091212.Peer-Reviewed Original Research
2010
PAIRWISE REGISTRATION OF IMAGES WITH MISSING CORRESPONDENCES DUE TO RESECTION
Chitphakdithai N, Duncan JS. PAIRWISE REGISTRATION OF IMAGES WITH MISSING CORRESPONDENCES DUE TO RESECTION. 2011 IEEE International Symposium On Biomedical Imaging: From Nano To Macro 2010, 2010: 1025-1028. PMID: 21804926, PMCID: PMC3146293, DOI: 10.1109/isbi.2010.5490164.Peer-Reviewed Original ResearchNon-rigid Registration with Missing Correspondences in Preoperative and Postresection Brain Images
Chitphakdithai N, Duncan JS. Non-rigid Registration with Missing Correspondences in Preoperative and Postresection Brain Images. Lecture Notes In Computer Science 2010, 13: 367-374. PMID: 20879252, PMCID: PMC3031159, DOI: 10.1007/978-3-642-15705-9_45.Peer-Reviewed Original ResearchConceptsTypes of datasetsNon-rigid registration methodImage alignmentNon-rigid registrationMissing correspondencesSegmentation algorithmNon-rigid registration algorithmSimilarity metricCorrespondence problemValid correspondencesRegistration algorithmRegistration methodExpectation-maximization algorithmBrain imagesJoint registrationReal dataAlgorithmImagesRegistrationError kernel