Publications

2024

Factors associated with tuberculosis treatment initiation among bacteriologically negative individuals evaluated for tuberculosis: an individual patient data meta-analysis.Kim S, Can MH, Agizew TB, Auld AF, Balcells ME, Bjerrum S, Dheda K, Dorman SE, Esmail A, Fielding K, Garcia-Basteiro AL, Hanrahan CF, Kebede W, Kohli M, Luetkemeyer AF, Mita C, Reeve BWP, Silva DR, Sweeney S, Theron G, Trajman A, Vassall A, Warren JL, Yotebieng M, Cohen T, Menzies NA. medRxiv. 2024 Apr 8; 2024 Apr 8. PMID: 38645191.
The recent rapid expansion of multidrug resistant Ural lineage Mycobacterium tuberculosis in Moldova.Chitwood MH, Colijn C, Yang C, Crudu V, Ciobanu N, Codreanu A, Kim J, Rancu I, Rhee K, Cohen T, Sobkowiak B. Nat Commun. 2024 Apr 5; 2024 Apr 5. PMID: 38580642.
Disparities in Tuberculosis Incidence by Race and Ethnicity Among the U.S.-Born Population in the United States, 2011 to 2021 : An Analysis of National Disease Registry Data.Li Y, Regan M, Swartwood NA, Barham T, Beeler Asay GR, Cohen T, Hill AN, Horsburgh CR Jr, Khan A, Marks SM, Myles RL, Salomon JA, Self JL, Menzies NA. Ann Intern Med. 2024 Apr; 2024 Apr 2. PMID: 38560914.
Identifying local foci of tuberculosis transmission in Moldova using a spatial multinomial logistic regression model.Lan Y, Crudu V, Ciobanu N, Codreanu A, Chitwood MH, Sobkowiak B, Warren JL, Cohen T. EBioMedicine. 2024 Apr; 2024 Mar 26. PMID: 38531172.
Quantifying gaps in the tuberculosis care cascade in Brazil: A mathematical model study using national program data.Emani S, Alves K, Alves LC, da Silva DA, Oliveira PB, Castro MC, Cohen T, Couto RM, Sanchez M, Menzies NA. PLoS Med. 2024 Mar; 2024 Mar 21. PMID: 38512968.
Estimated rates of progression to tuberculosis disease for persons infected with Mycobacterium tuberculosis in the United States.Ekramnia M, Li Y, Haddad MB, Marks SM, Kammerer JS, Swartwood NA, Cohen T, Miller JW, Horsburgh CR, Salomon JA, Menzies NA. Epidemiology. 2024 Mar 1; 2023 Jan 30. PMID: 38290139.
Racial and ethnic disparities in diagnosis and treatment outcomes among US-born people diagnosed with tuberculosis, 2003-19: an analysis of national surveillance data.Regan M, Li Y, Swartwood NA, Barham T, Asay GRB, Cohen T, Hill AN, Horsburgh CR, Khan A, Marks SM, Myles RL, Salomon JA, Self JL, Menzies NA. Lancet Public Health. 2024 Jan. PMID: 38176842.

2023

Signatures of transmission in within-host M. tuberculosis variation.Walter KS, Cohen T, Mathema B, Colijn C, Sobkowiak B, Comas I, Goig GA, Croda J, Andrews JR. medRxiv. 2023 Dec 29; 2023 Dec 29. PMID: 38234741.
Spatial modeling of Mycobacterium tuberculosis transmission with dyadic genetic relatedness data.Warren JL, Chitwood MH, Sobkowiak B, Colijn C, Cohen T. Biometrics. 2023 Dec; 2023 Feb 15. PMID: 36745619.
Spatially-targeted tuberculosis screening has limited impact beyond household contact tracing in Lima, Peru: A model-based analysis.Havumaki J, Warren JL, Zelner J, Menzies NA, Calderon R, Contreras C, Lecca L, Becerra MC, Murray M, Cohen T. PLoS One. 2023; 2023 Oct 30. PMID: 37903091.
Global burden of disease due to rifampicin-resistant tuberculosis: a mathematical modeling analysis.Menzies NA, Allwood BW, Dean AS, Dodd PJ, Houben RMGJ, James LP, Knight GM, Meghji J, Nguyen LN, Rachow A, Schumacher SG, Mirzayev F, Cohen T. Nat Commun. 2023 Oct 4; 2023 Oct 4. PMID: 37794037.
Tabby2: a user-friendly web tool for forecasting state-level TB outcomes in the United States.Swartwood NA, Testa C, Cohen T, Marks SM, Hill AN, Beeler Asay G, Cochran J, Cranston K, Randall LM, Tibbs A, Horsburgh CR Jr, Salomon JA, Menzies NA. BMC Med. 2023 Aug 30; 2023 Aug 30. PMID: 37649031.
Changes in Population Immunity Against Infection and Severe Disease From Severe Acute Respiratory Syndrome Coronavirus 2 Omicron Variants in the United States Between December 2021 and November 2022.Klaassen F, Chitwood MH, Cohen T, Pitzer VE, Russi M, Swartwood NA, Salomon JA, Menzies NA. Clin Infect Dis. 2023 Aug 14. PMID: 37074868.
Global, regional, and national estimates of tuberculosis incidence and case detection among incarcerated individuals from 2000 to 2019: a systematic analysis.Martinez L, Warren JL, Harries AD, Croda J, Espinal MA, Olarte RAL, Avedillo P, Lienhardt C, Bhatia V, Liu Q, Chakaya J, Denholm JT, Lin Y, Kawatsu L, Zhu L, Horsburgh CR, Cohen T, Andrews JR. Lancet Public Health. 2023 Jul. PMID: 37393090.
Development of treatment-decision algorithms for children evaluated for pulmonary tuberculosis: an individual participant data meta-analysis.Gunasekera KS, Marcy O, Muñoz J, Lopez-Varela E, Sekadde MP, Franke MF, Bonnet M, Ahmed S, Amanullah F, Anwar A, Augusto O, Aurilio RB, Banu S, Batool I, Brands A, Cain KP, Carratalá-Castro L, Caws M, Click ES, Cranmer LM, García-Basteiro AL, Hesseling AC, Huynh J, Kabir S, Lecca L, Mandalakas A, Mavhunga F, Myint AA, Myo K, Nampijja D, Nicol MP, Orikiriza P, Palmer M, Sant'Anna CC, Siddiqui SA, Smith JP, Song R, Thuong Thuong NT, Ung V, van der Zalm MM, Verkuijl S, Viney K, Walters EG, Warren JL, Zar HJ, Marais BJ, Graham SM, Debray TPA, Cohen T, Seddon JA. Lancet Child Adolesc Health. 2023 May; 2023 Mar 13. PMID: 36924781.
Transmission modeling to infer tuberculosis incidence prevalence and mortality in settings with generalized HIV epidemics.Dodd PJ, Shaweno D, Ku CC, Glaziou P, Pretorius C, Hayes RJ, MacPherson P, Cohen T, Ayles H. Nat Commun. 2023 Mar 24; 2023 Mar 24. PMID: 36964130.
Quantifying Mycobacterium tuberculosis Transmission Dynamics Across Global Settings: A Systematic Analysis.Smith JP, Cohen T, Dowdy D, Shrestha S, Gandhi NR, Hill AN. Am J Epidemiol. 2023 Jan 6. PMID: 36227246.

2022

Re-evaluating the health impact and cost-effectiveness of tuberculosis preventive treatment for modern HIV cohorts on antiretroviral therapy: a modelling analysis using data from Tanzania.Zhu J, Lyatuu G, Sudfeld CR, Kiravu A, Sando D, Machumi L, Minde J, Chisonjela F, Cohen T, Menzies NA. Lancet Glob Health. 2022 Nov. PMID: 36240830.
Budget impact of next-generation sequencing for diagnosis of TB drug resistance in Moldova.Cates L, Codreanu A, Ciobanu N, Fosburgh H, Allender CJ, Centner H, Engelthaler DM, Crudu V, Cohen T, Menzies NA. Int J Tuberc Lung Dis. 2022 Oct 1. PMID: 36163669.
Excess tuberculosis cases and deaths following an economic recession in Brazil: an analysis of nationally representative disease registry data.Li Y, de Macedo Couto R, Pelissari DM, Costa Alves L, Bartholomay P, Maciel EL, Sanchez M, Castro MC, Cohen T, Menzies NA. Lancet Glob Health. 2022 Oct; 2022 Aug 29. PMID: 36049488.
A spatial-mechanistic model to estimate subnational tuberculosis burden with routinely collected data: An application in Brazilian municipalities.Chitwood MH, Alves LC, Bartholomay P, Couto RM, Sanchez M, Castro MC, Cohen T, Menzies NA. PLOS Glob Public Health. 2022; 2022 Sep 21. PMID: 36962578.
National survey in South Africa reveals high tuberculosis prevalence among previously treated people.Marx FM, Hesseling AC, Martinson N, Theron G, Cohen T. Lancet Infect Dis. 2022 Sep. PMID: 36029778.
Neighbourhood prevalence-to-notification ratios for adult bacteriologically-confirmed tuberculosis reveals hotspots of underdiagnosis in Blantyre, Malawi.Khundi M, Carpenter JR, Corbett EL, Feasey HRA, Soko RN, Nliwasa M, Twabi H, Chiume L, Burke RM, Horton KC, Dodd PJ, Cohen T, MacPherson P. PLoS One. 2022; 2022 May 23. PMID: 35605004.
Trends, Mechanisms, and Racial/Ethnic Differences of Tuberculosis Incidence in the US-Born Population Aged 50 Years or Older in the United States.Kim S, Cohen T, Horsburgh CR, Miller JW, Hill AN, Marks SM, Li R, Kammerer JS, Salomon JA, Menzies NA. Clin Infect Dis. 2022 May 3. PMID: 34323959.
The role of prisons in disseminating tuberculosis in Brazil: A genomic epidemiology study.Walter KS, Dos Santos PCP, Gonçalves TO, da Silva BO, da Silva Santos A, de Cássia Leite A, da Silva AM, Figueira Moreira FM, de Oliveira RD, Lemos EF, Cunha E, Liu YE, Ko AI, Colijn C, Cohen T, Mathema B, Croda J, Andrews JR. Lancet Reg Health Am. 2022 May; 2022 Feb 1. PMID: 35647574.
Spatially targeted digital chest radiography to reduce tuberculosis in high-burden settings: A study of adaptive decision making.de Villiers AK, Dye C, Yaesoubi R, Cohen T, Marx FM. Epidemics. 2022 Mar; 2022 Jan 21. PMID: 35093849.
A Cluster-based Method to Quantify Individual Heterogeneity in Tuberculosis Transmission.Smith JP, Gandhi NR, Silk BJ, Cohen T, Lopman B, Raz K, Winglee K, Kammerer S, Benkeser D, Kramer MR, Hill AN. Epidemiology. 2022 Mar 1. PMID: 34907974.
Phylogeography and transmission of M. tuberculosis in Moldova: A prospective genomic analysis.Yang C, Sobkowiak B, Naidu V, Codreanu A, Ciobanu N, Gunasekera KS, Chitwood MH, Alexandru S, Bivol S, Russi M, Havumaki J, Cudahy P, Fosburgh H, Allender CJ, Centner H, Engelthaler DM, Menzies NA, Warren JL, Crudu V, Colijn C, Cohen T. PLoS Med. 2022 Feb; 2022 Feb 22. PMID: 35192619.
Global estimates of paediatric tuberculosis incidence in 2013-19: a mathematical modelling analysis.Yerramsetti S, Cohen T, Atun R, Menzies NA. Lancet Glob Health. 2022 Feb; 2021 Dec 8. PMID: 34895517.
vCOMBAT: a novel tool to create and visualize a computational model of bacterial antibiotic target-binding.Tran VN, Shams A, Ascioglu S, Martinecz A, Liang J, Clarelli F, Mostowy R, Cohen T, Abel Zur Wiesch P. BMC Bioinformatics. 2022 Jan 6; 2022 Jan 6. PMID: 34991453.
Predicting resistance to fluoroquinolones among patients with rifampicin-resistant tuberculosis using machine learning methods.You S, Chitwood MH, Gunasekera KS, Crudu V, Codreanu A, Ciobanu N, Furin J, Cohen T, Warren JL, Yaesoubi R. PLOS Digit Health. 2022; 2022 Jun 30. PMID: 36177394.
The Health and Economic Benefits of Tests That Predict Future Progression to Tuberculosis Disease.Menzies NA, Shrestha S, Parriott A, Marks SM, Hill AN, Dowdy DW, Shete PB, Cohen T, Salomon JA. Epidemiology. 2022 Jan 1. PMID: 34669631.

2021

Lifetime burden of disease due to incident tuberculosis: a global reappraisal including post-tuberculosis sequelae.Menzies NA, Quaife M, Allwood BW, Byrne AL, Coussens AK, Harries AD, Marx FM, Meghji J, Pedrazzoli D, Salomon JA, Sweeney S, van Kampen SC, Wallis RS, Houben RMGJ, Cohen T. Lancet Glob Health. 2021 Dec. PMID: 34798027.
Development of a Treatment-decision Algorithm for Human Immunodeficiency Virus-uninfected Children Evaluated for Pulmonary Tuberculosis.Gunasekera KS, Walters E, van der Zalm MM, Palmer M, Warren JL, Hesseling AC, Cohen T, Seddon JA. Clin Infect Dis. 2021 Aug 16. PMID: 33449999.
Evolution and emergence of multidrug-resistant Mycobacterium tuberculosis in Chisinau, Moldova.Brown TS, Eldholm V, Brynildsrud O, Osnes M, Levy N, Stimson J, Colijn C, Alexandru S, Noroc E, Ciobanu N, Crudu V, Cohen T, Mathema B. Microb Genom. 2021 Aug. PMID: 34431762.
Effectiveness of spatially targeted interventions for control of HIV, tuberculosis, leprosy and malaria: a systematic review.Khundi M, Carpenter JR, Nliwasa M, Cohen T, Corbett EL, MacPherson P. BMJ Open. 2021 Jul 13; 2021 Jul 13. PMID: 34257091.
Understanding the Host in the Management of Pneumonia. An Official American Thoracic Society Workshop Report.Dela Cruz CS, Evans SE, Restrepo MI, Dean N, Torres A, Amara-Elori I, Awasthi S, Caler E, Cao B, Chalmers JD, Chastre J, Cohen TS, Cohen AH, Crothers K, Di YP, Egan ME, Feldman C, Gautam S, Halstead ES, Herold S, Jones BE, Luna C, Niederman MS, Mendez R, Menendez R, Mizgerd JP, Nusrat R, Ramirez J, Shindo Y, Waterer G, Yeligar SM, Wunderink RG. Ann Am Thorac Soc. 2021 Jul. PMID: 34242148.
The impact of COVID-19 on TB: a review of the data.McQuaid CF, Vassall A, Cohen T, Fiekert K, White RG. Int J Tuberc Lung Dis. 2021 Jun 1. PMID: 34049605.
Bayesian evidence synthesis to estimate subnational TB incidence: An application in Brazil.Chitwood MH, Pelissari DM, Drummond Marques da Silva G, Bartholomay P, Rocha MS, Sanchez M, Arakaki-Sanchez D, Glaziou P, Cohen T, Castro MC, Menzies NA. Epidemics. 2021 Jun; 2021 Feb 20. PMID: 33676092.
Incidence and prevalence of tuberculosis in incarcerated populations: a systematic review and meta-analysis.Cords O, Martinez L, Warren JL, O'Marr JM, Walter KS, Cohen T, Zheng J, Ko AI, Croda J, Andrews JR. Lancet Public Health. 2021 May; 2021 Mar 22. PMID: 33765455.
The escalating tuberculosis crisis in central and South American prisons.Walter KS, Martinez L, Arakaki-Sanchez D, Sequera VG, Estigarribia Sanabria G, Cohen T, Ko AI, García-Basteiro AL, Rueda ZV, López-Olarte RA, Espinal MA, Croda J, Andrews JR. Lancet. 2021 Apr 24; 2021 Apr 8. PMID: 33838724.
The positive externalities of migrant-based TB control strategy in a Chinese urban population with internal migration: a transmission-dynamic modeling study.Yang C, Kang J, Lu L, Guo X, Shen X, Cohen T, Menzies NA. BMC Med. 2021 Apr 20; 2021 Apr 20. PMID: 33874940.
Reporting practices for genomic epidemiology of tuberculosis: a systematic review of the literature using STROME-ID guidelines as a benchmark.Cheng B, Behr MA, Howden BP, Cohen T, Lee RS. Lancet Microbe. 2021 Mar; 2021 Mar 2. PMID: 33842904.
Laboratory costs of diagnosing TB in a high multidrug-resistant TB setting.Cates L, Crudu V, Codreanu A, Ciobanu N, Fosburgh H, Cohen T, Menzies NA. Int J Tuberc Lung Dis. 2021 Mar 1. PMID: 33688812.
Trends in Untreated Tuberculosis in Large Municipalities, Brazil, 2008-2017.Chitwood MH, Pelissari DM, Marques da Silva GD, Bartholomay P, Rocha MS, Arakaki-Sanchez D, Sanchez M, Cohen T, Castro MC, Menzies NA. Emerg Infect Dis. 2021 Mar. PMID: 33622464.
Yield, Efficiency, and Costs of Mass Screening Algorithms for Tuberculosis in Brazilian Prisons.Santos ADS, de Oliveira RD, Lemos EF, Lima F, Cohen T, Cords O, Martinez L, Gonçalves C, Ko A, Andrews JR, Croda J. Clin Infect Dis. 2021 Mar 1. PMID: 32064514.
Protective impacts of household-based tuberculosis contact tracing are robust across endemic incidence levels and community contact patterns.Havumaki J, Cohen T, Zhai C, Miller JC, Guikema SD, Eisenberg MC, Zelner J. PLoS Comput Biol. 2021 Feb; 2021 Feb 8. PMID: 33556077.
Ongoing challenges to understanding multidrug- and rifampicin-resistant tuberculosis in children versus adults.McQuaid CF, Cohen T, Dean AS, Houben RMGJ, Knight GM, Zignol M, White RG. Eur Respir J. 2021 Feb; 2021 Feb 4. PMID: 32855219.
Continuity of TB services during the COVID-19 pandemic in China.Shen X, Sha W, Yang C, Pan Q, Cohen T, Cheng S, Cai Q, Kan X, Zong P, Zeng Z, Tan S, Liang R, Bai L, Xia J, Wu S, Sun P, Wu G, Cai C, Wang X, Ai K, Liu J, Yuan Z. Int J Tuberc Lung Dis. 2021 Jan 1. PMID: 33384053.
Time Since Infection and Risks of Future Disease for Individuals with Mycobacterium tuberculosis Infection in the United States.Menzies NA, Swartwood N, Testa C, Malyuta Y, Hill AN, Marks SM, Cohen T, Salomon JA. Epidemiology. 2021 Jan. PMID: 33009253.

2020

Evaluation of 6-Month Versus Continuous Isoniazid Preventive Therapy for Mycobacterium tuberculosis in Adults Living With HIV/AIDS in Malawi.Hsieh YL, Jahn A, Menzies NA, Yaesoubi R, Salomon JA, Girma B, Gunde L, Eaton JW, Auld A, Odo M, Kiyiika CN, Kalua T, Chiwandira B, Mpunga JU, Mbendra K, Corbett L, Hosseinipour MC, Cohen T, Kunkel A. J Acquir Immune Defic Syndr. 2020 Dec 15. PMID: 33177475.
High-resolution estimates of tuberculosis incidence among non-U.S.-born persons residing in the United States, 2000-2016.Hill AN, Cohen T, Salomon JA, Menzies NA. Epidemics. 2020 Dec; 2020 Nov 10. PMID: 33242759.
Impact of Effective Global Tuberculosis Control on Health and Economic Outcomes in the United States.Menzies NA, Bellerose M, Testa C, Swartwood NA, Malyuta Y, Cohen T, Marks SM, Hill AN, Date AA, Maloney SA, Bowden SE, Grills AW, Salomon JA. Am J Respir Crit Care Med. 2020 Dec 1. PMID: 32645277.
Risk factors for recurrent tuberculosis after successful treatment in a high burden setting: a cohort study.Cudahy PGT, Wilson D, Cohen T. BMC Infect Dis. 2020 Oct 23; 2020 Oct 23. PMID: 33097000.
Children as sentinels of tuberculosis transmission: disease mapping of programmatic data.Gunasekera KS, Zelner J, Becerra MC, Contreras C, Franke MF, Lecca L, Murray MB, Warren JL, Cohen T. BMC Med. 2020 Sep 2; 2020 Sep 2. PMID: 32873309.
Cost-effectiveness of post-treatment follow-up examinations and secondary prevention of tuberculosis in a high-incidence setting: a model-based analysis.Marx FM, Cohen T, Menzies NA, Salomon JA, Theron G, Yaesoubi R. Lancet Glob Health. 2020 Sep. PMID: 32827484.
Genomic variant-identification methods may alter Mycobacterium tuberculosis transmission inferences.Walter KS, Colijn C, Cohen T, Mathema B, Liu Q, Bowers J, Engelthaler DM, Narechania A, Lemmer D, Croda J, Andrews JR. Microb Genom. 2020 Aug; 2020 Jul 31. PMID: 32735210.
Post-tuberculosis mortality and morbidity: valuing the hidden epidemic.Quaife M, Houben RMGJ, Allwood B, Cohen T, Coussens AK, Harries AD, van Kampen S, Marx FM, Sweeney S, Wallis RS, Menzies NA. Lancet Respir Med. 2020 Apr; 2020 Feb 10. PMID: 32057300.
Smoking and HIV associated with subclinical tuberculosis: analysis of a population-based prevalence survey.Gunasekera K, Cohen T, Gao W, Ayles H, Godfrey-Faussett P, Claassens M. Int J Tuberc Lung Dis. 2020 Mar 1. PMID: 32228765.
Transmission Modeling with Regression Adjustment for Analyzing Household-based Studies of Infectious Disease: Application to Tuberculosis.Crawford FW, Marx FM, Zelner J, Cohen T. Epidemiology. 2020 Mar. PMID: 31764276.
Comparative Modeling of Tuberculosis Epidemiology and Policy Outcomes in California.Menzies NA, Parriott A, Shrestha S, Dowdy DW, Cohen T, Salomon JA, Marks SM, Hill AN, Winston CA, Asay GR, Barry P, Readhead A, Flood J, Kahn JG, Shete PB. Am J Respir Crit Care Med. 2020 Feb 1. PMID: 31626560.

2019

Transmissibility and potential for disease progression of drug resistant Mycobacterium tuberculosis: prospective cohort study.Becerra MC, Huang CC, Lecca L, Bayona J, Contreras C, Calderon R, Yataco R, Galea J, Zhang Z, Atwood S, Cohen T, Mitnick CD, Farmer P, Murray M. BMJ. 2019 Oct 24; 2019 Oct 24. PMID: 31649017.
Notification of relapse and other previously treated tuberculosis in the 52 health districts of South Africa.Marx FM, Cohen T, Lombard C, Hesseling AC, Dlamini SS, Beyers N, Naidoo P. Int J Tuberc Lung Dis. 2019 Aug 1. PMID: 31533878.
Towards better prediction of Mycobacterium tuberculosis lineages from MIRU-VNTR data.Thain N, Le C, Crossa A, Ahuja SD, Meissner JS, Mathema B, Kreiswirth B, Kurepina N, Cohen T, Chindelevitch L. Infect Genet Evol. 2019 Aug; 2018 Jun 28. PMID: 29960078.
Correction: Evaluating strategies for control of tuberculosis in prisons and prevention of spillover into communities: An observational and modeling study from Brazil.Mabud TS, de Lourdes Delgado Alves M, Ko AI, Basu S, Walter KS, Cohen T, Mathema B, Colijn C, Lemos E, Croda J, Andrews JR. PLoS Med. 2019 Mar; 2019 Mar 1. PMID: 30822314.
Beyond the SNP Threshold: Identifying Outbreak Clusters Using Inferred Transmissions.Stimson J, Gardy J, Mathema B, Crudu V, Cohen T, Colijn C. Mol Biol Evol. 2019 Mar 1. PMID: 30690464.
Spatially targeted screening to reduce tuberculosis transmission in high-incidence settings.Cudahy PGT, Andrews JR, Bilinski A, Dowdy DW, Mathema B, Menzies NA, Salomon JA, Shrestha S, Cohen T. Lancet Infect Dis. 2019 Mar; 2018 Dec 13. PMID: 30554997.
Disparities in access to diagnosis and care in Blantyre, Malawi, identified through enhanced tuberculosis surveillance and spatial analysis.MacPherson P, Khundi M, Nliwasa M, Choko AT, Phiri VK, Webb EL, Dodd PJ, Cohen T, Harris R, Corbett EL. BMC Med. 2019 Jan 29; 2019 Jan 29. PMID: 30691470.
Evaluating strategies for control of tuberculosis in prisons and prevention of spillover into communities: An observational and modeling study from Brazil.Mabud TS, de Lourdes Delgado Alves M, Ko AI, Basu S, Walter KS, Cohen T, Mathema B, Colijn C, Lemos E, Croda J, Andrews JR. PLoS Med. 2019 Jan; 2019 Jan 24. PMID: 30677013.

2018

The impact of migration on tuberculosis in the United States.Menzies NA, Hill AN, Cohen T, Salomon JA. Int J Tuberc Lung Dis. 2018 Dec 1. PMID: 30606311.
Evaluation of Tuberculosis Treatment Response With Serial C-Reactive Protein Measurements.Wilson D, Moosa MS, Cohen T, Cudahy P, Aldous C, Maartens G. Open Forum Infect Dis. 2018 Nov; 2018 Oct 10. PMID: 30474046.
Trends in C-Reactive Protein, D-Dimer, and Fibrinogen during Therapy for HIV-Associated Multidrug-Resistant Tuberculosis.Cudahy PGT, Warren JL, Cohen T, Wilson D. Am J Trop Med Hyg. 2018 Nov. PMID: 30226135.
Prospects for Tuberculosis Elimination in the United States: Results of a Transmission Dynamic Model.Menzies NA, Cohen T, Hill AN, Yaesoubi R, Galer K, Wolf E, Marks SM, Salomon JA. Am J Epidemiol. 2018 Sep 1. PMID: 29762657.
Investigating spillover of multidrug-resistant tuberculosis from a prison: a spatial and molecular epidemiological analysis.Warren JL, Grandjean L, Moore DAJ, Lithgow A, Coronel J, Sheen P, Zelner JL, Andrews JR, Cohen T. BMC Med. 2018 Aug 3; 2018 Aug 3. PMID: 30071850.
Evidence sources on the natural history of latent tuberculosis infection.Menzies NA, Cohen T, Salomon JA. Lancet Infect Dis. 2018 Aug. PMID: 30064672.
Progression from latent infection to active disease in dynamic tuberculosis transmission models: a systematic review of the validity of modelling assumptions.Menzies NA, Wolf E, Connors D, Bellerose M, Sbarra AN, Cohen T, Hill AN, Yaesoubi R, Galer K, White PJ, Abubakar I, Salomon JA. Lancet Infect Dis. 2018 Aug; 2018 Apr 10. PMID: 29653698.
Internal migration and transmission dynamics of tuberculosis in Shanghai, China: an epidemiological, spatial, genomic analysis.Yang C, Lu L, Warren JL, Wu J, Jiang Q, Zuo T, Gan M, Liu M, Liu Q, DeRiemer K, Hong J, Shen X, Colijn C, Guo X, Gao Q, Cohen T. Lancet Infect Dis. 2018 Jul; 2018 Apr 23. PMID: 29681517.
Where is tuberculosis transmission happening? Insights from the literature, new tools to study transmission and implications for the elimination of tuberculosis.Auld SC, Shah NS, Cohen T, Martinson NA, Gandhi NR. Respirology. 2018 Jun 5; 2018 Jun 5. PMID: 29869818.
Pan-tuberculosis regimens: an argument for.Wallis RS, Cohen T, Menzies NA, Churchyard G. Lancet Respir Med. 2018 Apr. PMID: 29595501.
Tuberculosis control interventions targeted to previously treated people in a high-incidence setting: a modelling study.Marx FM, Yaesoubi R, Menzies NA, Salomon JA, Bilinski A, Beyers N, Cohen T. Lancet Glob Health. 2018 Apr; 2018 Feb 19. PMID: 29472018.
Protective effects of household-based TB interventions are robust to neighbourhood-level variation in exposure risk in Lima, Peru: a model-based analysis.Zelner J, Murray M, Becerra M, Galea J, Lecca L, Calderon R, Yataco R, Zhang Z, Cohen T. Int J Epidemiol. 2018 Feb 1. PMID: 29025111.
Eliminating tuberculosis in low-burden countries.Jackson C, Cohen T, Rangaka MX, Abubakar I. Int J Tuberc Lung Dis. 2018 Jan 1. PMID: 29297418.

2017

Population implications of the use of bedaquiline in people with extensively drug-resistant tuberculosis: are fears of resistance justified?Kunkel A, Furin J, Cohen T. Lancet Infect Dis. 2017 Dec; 2017 May 19. PMID: 28533094.
Tuberculosis.Bloom BR, Atun R, Cohen T, Dye C, Fraser H, Gomez GB, Knight G, Murray M, Nardell E, Rubin E, Salomon J, Vassall A, Volchenkov G, White R, Wilson D, Yadav P. 2017 Nov 3. PMID: 30212088.
Drivers of Tuberculosis Transmission.Mathema B, Andrews JR, Cohen T, Borgdorff MW, Behr M, Glynn JR, Rustomjee R, Silk BJ, Wood R. J Infect Dis. 2017 Nov 3. PMID: 29112745.
Polyclonal Pulmonary Tuberculosis Infections and Risk for Multidrug Resistance, Lima, Peru.Nathavitharana RR, Shi CX, Chindelevitch L, Calderon R, Zhang Z, Galea JT, Contreras C, Yataco R, Lecca L, Becerra MC, Murray MB, Cohen T. Emerg Infect Dis. 2017 Nov. PMID: 29048297.
Catastrophic costs potentially averted by tuberculosis control in India and South Africa: a modelling study.Verguet S, Riumallo-Herl C, Gomez GB, Menzies NA, Houben RMGJ, Sumner T, Lalli M, White RG, Salomon JA, Cohen T, Foster N, Chatterjee S, Sweeney S, Baena IG, Lönnroth K, Weil DE, Vassall A. Lancet Glob Health. 2017 Nov. PMID: 29025634.
Genomic analysis of globally diverse Mycobacterium tuberculosis strains provides insights into the emergence and spread of multidrug resistance.Manson AL, Cohen KA, Abeel T, Desjardins CA, Armstrong DT, Barry CE 3rd, Brand J, Chapman SB, Cho SN, Gabrielian A, Gomez J, Jodals AM, Joloba M, Jureen P, Lee JS, Malinga L, Maiga M, Nordenberg D, Noroc E, Romancenco E, Salazar A, Ssengooba W, Velayati AA, Winglee K, Zalutskaya A, Via LE, Cassell GH, Dorman SE, Ellner J, Farnia P, Galagan JE, Rosenthal A, Crudu V, Homorodean D, Hsueh PR, Narayanan S, Pym AS, Skrahina A, Swaminathan S, Van der Walt M, Alland D, Bishai WR, Cohen T, Hoffner S, Birren BW, Earl AM. Nat Genet. 2017 Mar; 2017 Jan 16. PMID: 28092681.
Second line drug susceptibility testing to inform the treatment of rifampin-resistant tuberculosis: a quantitative perspective.Kendall EA, Cohen T, Mitnick CD, Dowdy DW. Int J Infect Dis. 2017 Mar; 2016 Dec 19. PMID: 28007660.
A Multistrain Mathematical Model To Investigate the Role of Pyrazinamide in the Emergence of Extensively Drug-Resistant Tuberculosis.Fofana MO, Shrestha S, Knight GM, Cohen T, White RG, Cobelens F, Dowdy DW. Antimicrob Agents Chemother. 2017 Mar; 2017 Feb 23. PMID: 27956422.
Priority-Setting for Novel Drug Regimens to Treat Tuberculosis: An Epidemiologic Model.Kendall EA, Shrestha S, Cohen T, Nuermberger E, Dooley KE, Gonzalez-Angulo L, Churchyard GJ, Nahid P, Rich ML, Bansbach C, Forissier T, Lienhardt C, Dowdy DW. PLoS Med. 2017 Jan; 2017 Jan 3. PMID: 28045934.

2016

The contributions of Steve Lawn to the science, advocacy and policy of HIV-associated TB.Van Rie A, Cohen T. Int J Tuberc Lung Dis. 2016 Dec. PMID: 27931328.
Genomic diversity in autopsy samples reveals within-host dissemination of HIV-associated Mycobacterium tuberculosis.Lieberman TD, Wilson D, Misra R, Xiong LL, Moodley P, Cohen T, Kishony R. Nat Med. 2016 Dec; 2016 Oct 31. PMID: 27798613.
Benefits of continuous isoniazid preventive therapy may outweigh resistance risks in a declining tuberculosis/HIV coepidemic.Kunkel A, Crawford FW, Shepherd J, Cohen T. AIDS. 2016 Nov 13. PMID: 27782966.
Cost-effectiveness and resource implications of aggressive action on tuberculosis in China, India, and South Africa: a combined analysis of nine models.Menzies NA, Gomez GB, Bozzani F, Chatterjee S, Foster N, Baena IG, Laurence YV, Qiang S, Siroka A, Sweeney S, Verguet S, Arinaminpathy N, Azman AS, Bendavid E, Chang ST, Cohen T, Denholm JT, Dowdy DW, Eckhoff PA, Goldhaber-Fiebert JD, Handel A, Huynh GH, Lalli M, Lin HH, Mandal S, McBryde ES, Pandey S, Salomon JA, Suen SC, Sumner T, Trauer JM, Wagner BG, Whalen CC, Wu CY, Boccia D, Chadha VK, Charalambous S, Chin DP, Churchyard G, Daniels C, Dewan P, Ditiu L, Eaton JW, Grant AD, Hippner P, Hosseini M, Mametja D, Pretorius C, Pillay Y, Rade K, Sahu S, Wang L, Houben RMGJ, Kimerling ME, White RG, Vassall A. Lancet Glob Health. 2016 Nov; 2016 Oct 6. PMID: 27720689.
Feasibility of achieving the 2025 WHO global tuberculosis targets in South Africa, China, and India: a combined analysis of 11 mathematical models.Houben RMGJ, Menzies NA, Sumner T, Huynh GH, Arinaminpathy N, Goldhaber-Fiebert JD, Lin HH, Wu CY, Mandal S, Pandey S, Suen SC, Bendavid E, Azman AS, Dowdy DW, Bacaër N, Rhines AS, Feldman MW, Handel A, Whalen CC, Chang ST, Wagner BG, Eckhoff PA, Trauer JM, Denholm JT, McBryde ES, Cohen T, Salomon JA, Pretorius C, Lalli M, Eaton JW, Boccia D, Hosseini M, Gomez GB, Sahu S, Daniels C, Ditiu L, Chin DP, Wang L, Chadha VK, Rade K, Dewan P, Hippner P, Charalambous S, Grant AD, Churchyard G, Pillay Y, Mametja LD, Kimerling ME, Vassall A, White RG. Lancet Glob Health. 2016 Nov; 2016 Oct 6. PMID: 27720688.
Tradeoffs in Introduction Policies for the Anti-Tuberculosis Drug Bedaquiline: A Model-Based Analysis.Kunkel A, Cobelens FG, Cohen T. PLoS Med. 2016 Oct; 2016 Oct 11. PMID: 27727274.
Multidrug-resistant tuberculosis treatment failure detection depends on monitoring interval and microbiological method.Mitnick CD, White RA, Lu C, Rodriguez CA, Bayona J, Becerra MC, Burgos M, Centis R, Cohen T, Cox H, D'Ambrosio L, Danilovitz M, Falzon D, Gelmanova IY, Gler MT, Grinsdale JA, Holtz TH, Keshavjee S, Leimane V, Menzies D, Migliori GB, Milstein MB, Mishustin SP, Pagano M, Quelapio MI, Shean K, Shin SS, Tolman AW, van der Walt ML, Van Deun A, Viiklepp P. Eur Respir J. 2016 Oct; 2016 Sep 1. PMID: 27587552.
High burden of prevalent tuberculosis among previously treated people in Southern Africa suggests potential for targeted control interventions.Marx FM, Floyd S, Ayles H, Godfrey-Faussett P, Beyers N, Cohen T. Eur Respir J. 2016 Oct; 2016 Jul 7. PMID: 27390274.
Connectivity of diagnostic technologies: improving surveillance and accelerating tuberculosis elimination.Andre E, Isaacs C, Affolabi D, Alagna R, Brockmann D, de Jong BC, Cambau E, Churchyard G, Cohen T, Delmee M, Delvenne JC, Farhat M, Habib A, Holme P, Keshavjee S, Khan A, Lightfoot P, Moore D, Moreno Y, Mundade Y, Pai M, Patel S, Nyaruhirira AU, Rocha LE, Takle J, Trébucq A, Creswell J, Boehme C. Int J Tuberc Lung Dis. 2016 Aug. PMID: 27393530.

Not on PubMed

Jenkins HE, Gegia M, Furin J, Kalandadze I, Nanava U, Chakhaia T, Cohen T. Geographic heterogeneity of multidrug-resistant tuberculosis in Georgia, 2009-2011. Euro Surveill. 2014 Mar 20;19(11). pii: 20743.