2021
Cross-platform transcriptomic profiling of the response to recombinant human erythropoietin
Wang G, Kitaoka T, Crawford A, Mao Q, Hesketh A, Guppy FM, Ash GI, Liu J, Gerstein MB, Pitsiladis YP. Cross-platform transcriptomic profiling of the response to recombinant human erythropoietin. Scientific Reports 2021, 11: 21705. PMID: 34737331, PMCID: PMC8568984, DOI: 10.1038/s41598-021-00608-9.Peer-Reviewed Original ResearchMeSH KeywordsErythropoiesisErythropoietinGene ExpressionGene Expression ProfilingHigh-Throughput Nucleotide SequencingHumansOligonucleotide Array Sequence AnalysisRNARNA-SeqSequence Analysis, RNATranscriptomeConceptsRNA-seqDifferential gene expressionPathway enrichment analysisRNA biologyTranscriptomic profilingTarget genesEnrichment analysisGene expressionEPO biologyMicroarray platformGene correlateCross-platform comparisonGenesBiologyImmune regulationHuman erythropoietinTissue protectionProfilingRegulationErythropoietinRecombinant human erythropoietinExpressionImportant toolErythropoiesisOxygen transport
2020
STARRPeaker: uniform processing and accurate identification of STARR-seq active regions
Lee D, Shi M, Moran J, Wall M, Zhang J, Liu J, Fitzgerald D, Kyono Y, Ma L, White KP, Gerstein M. STARRPeaker: uniform processing and accurate identification of STARR-seq active regions. Genome Biology 2020, 21: 298. PMID: 33292397, PMCID: PMC7722316, DOI: 10.1186/s13059-020-02194-x.Peer-Reviewed Original ResearchEnhancer Elements, GeneticGenomic LibraryHep G2 CellsHigh-Throughput Nucleotide SequencingHumansK562 CellsMalePromoter Regions, GeneticSequence Analysis, DNASoftware