Skip to Main Content

Publications

Electronic versions of these papers are provided as a professional courtesy to ensure timely dissemination of academic work for individual, noncommercial purposes. Copyright and all rights therein resides with the respective copyright holders, as stated within each paper. These files may not be reposted without permission.

[Google Scholar Profile]

2021 | 2020
2019 | 2018 | 2017 | 2016 | 2015
2014 | 2013 | 2012 | 2011 | 2008

2021

  • Ehrlich DB*, Stone JT*, Brandfonbrener D, Atanasov A, Murray JD (2021) (* denotes equal contribution)
    PsychRNN: an accessible and flexible Python package for training recurrent neural network models on cognitive tasks.
    eNeuro 0427-20.2020
    [DOI: 10.1523/ENEURO.0427-20.2020]

  • Emani PS, Warrell J, Anticevic A, Bekiranov S, Gandal M, McConnell MJ, Sapiro G, Aspuru-Guzik A, Baker JT, Bastiani M, Murray JD, Sotiropoulos SN, Taylor J, Senthil G, Lehner T, Gerstein MB, Harrow AW (2021)
    Quantum computing at the frontiers of biological sciences.
    Nature Methods 10.1038/s41592-020-01004-3
    [DOI: 10.1038/s41592-020-01004-3]
[Return to top]

2020

  • Shinn M, Lee D, Murray JD†, Seo H† (2020) († denotes co-corresponding)
    Transient neuronal suppression for exploitation of new sensory evidence.
    bioRxiv 10.1101/2020.11.29.403089
    [DOI: 10.1101/2020.11.29.403089]

  • Gu QL, Lam NH, Halassa MM, Murray JD (2020)
    Circuit mechanisms of top-down attentional control in a thalamic reticular model.
    bioRxiv 10.1101/2020.09.16.300749
    [DOI: 10.1101/2020.09.16.300749]

  • Ji JL, Helmer M, Fonteneau C, Burt JB, Tamayo Z, Demšar J, Adkinson B, Savić A, Preller KH, Moujaes F, Vollenweider FX, Martin WJ, Repovš G, Murray JD, Anticevic A (2020)
    Mapping brain-behavior space relationships along the psychosis spectrum.
    bioRxiv 10.1101/2020.09.15.267310
    [DOI: 10.1101/2020.09.15.267310]

  • Helmer H, Warrington SD, Mohammadi-Nejad A, Ji JL, Howell A, Rosand B, Anticevic A, Sotiropoulos SN, Murray JD (2020)
    On stability of Canonical Correlation Analysis and Partial Least Squares with application to brain-behavior associations.
    bioRxiv 10.1101/2020.08.25.265546
    [DOI: 10.1101/2020.08.25.265546]

  • Pettine WW, Louie K, Murray JD, Wang X-J (2020)
    Hierarchical network model excitatory-inhibitory tone shapes alternative strategies for different degrees of uncertainty in multi-attribute decisions.
    bioRxiv 10.1101/2020.01.28.923649
    [DOI: 10.1101/2020.01.28.923649]

  • Cavanagh SE*, Lam NH*, Murray JD†, Hunt LT†, Kennerley SW† (2020) (* denotes equal contribution) († denotes co-corresponding)
    A circuit mechanism for decision making biases and NMDA receptor hypofunction.
    eLife 9:e53664
    [DOI: 10.7554/eLife.53664] [Pubmed]

  • Shinn M, Ehrlich DB, Lee D, Murray JD†, Seo H† (2020) († denotes co-corresponding)
    Confluence of timing and reward biases in perceptual decision-making dynamics.
    Journal of Neuroscience 40:7326
    [DOI: 10.1523/JNEUROSCI.0544-20.2020] [Pubmed]

  • Shinn M*, Lam NH*, Murray JD (2020) (* denotes equal contribution)
    A flexible framework for simulating and fitting generalized drift-diffusion models.
    eLife 9:e56938
    [DOI: 10.7554/eLife.56938] [Pubmed]

  • Burt JB, Helmer M, Shinn M, Anticevic A, Murray JD (2020)
    Generative modeling of brain maps with spatial autocorrelation.
    NeuroImage 220:117038
    [DOI 10.1016/j.neuroimage.2020.117038] [Pubmed]

  • Gold JM, Bansal S, Anticevic A, Cho YT, Repovs G, Murray JD, Hahn B, Robinson BM, Luck SJ (2020)
    Refining the empirical constraints on computational models of spatial working memory in schizophrenia.
    Biological Psychiatry: Cognitive Neuroscience and Neuroimaging 5:913
    [DOI 10.1016/j.bpsc.2020.05.003] [Pubmed]

  • Preller KH, Duerler P, Burt JB, Ji JL, Adkinson BD, Staempfli P, Seifritz E, Repovs G, Krystal JH, Murray JD, Anticevic A, Vollenweider FX (2020)
    Psilocybin induces time-dependent changes in global functional connectivity.
    Biological Psychiatry 88:197
    [DOI 10.1016/j.biopsych.2019.12.027] [Pubmed]
[Return to top]

2019

  • Ji JL, Diehl C, Schleifer C, Tamminga CA, Keshavan MS, Sweeney JA, Clementz BA, Hill SK, Pearlson G, Yang G, Creatura G, Krystal JH, Repovs G, Murray JD, Winkler A, Anticevic A (2019)
    Schizophrenia exhibits bi-directional brain-wide alterations in cortico-striato-cerebellar circuits.
    Cerebral Cortex bhy306
    [DOI: 10.1093/cercor/bhy306] [Pubmed]

  • Spreng RN, DuPre E, Ji JL, Yang GJ, Diehl C, Murray JD, Pearlson GD, Anticevic A (2019)
    Structural covariance reveals alterations in control and salience network integrity in chronic schizophrenia.
    Cerebral Cortex bhz064
    [DOI: 10.1093/cercor/bhz064] [Pubmed]

  • Fulcher BD, Murray JD, Zerbi V, Wang X-J (2019)
    Multimodal gradients across mouse cortex.
    Proceedings of the National Academy of Sciences 116:4689
    [DOI: 10.1073/pnas.1814144116] [Pubmed]

  • Demirtas M, Burt JB*, Helmer M*, Ji JL, Adkinson BD, Glasser MF, Van Essen DC, Sotiropoulos S, Anticevic A, Murray JD (2019) (* denotes equal contribution)
    Hierarchical heterogeneity across human cortex shapes large-scale neural dynamics.
    Neuron 101:1181
    [DOI: 10.1016/j.neuron.2019.01.017] [Pubmed]
[Return to top]

2018

  • Preller KH, Burt JB, Ji JL, Schleifer C, Adkinson B, Stampfli P, Repovs G, Krystal JH, Murray JD, Vollenweider FX, Anticevic A (2018)
    Changes in global and thalamic brain connectivity in LSD-induced altered states are attributable to the 5-HT2A receptor.
    eLife 7:e35082
    [DOI: 10.7554/eLife.35082] [Pubmed]

  • Cho YT, Lam NH, Starc M, Santamauro N, Savic A, Diehl C, Schleifer CH, Repovs G, Murray JD, Anticevic A (2018)
    Effects of reward on spatial working memory in schizophrenia.
    Journal of Abnormal Psychology 127:695
    [DOI:10.1037/abn0000369] [Pubmed]

  • Constantinidis C, Funahashi S, Lee D, Murray JD, Qi XL, Wang M, Arnsten AFT (2018)
    Persistent spiking activity underlies working memory.
    Journal of Neuroscience 38:720
    [DOI: 10.1523/JNEUROSCI.2486-17.2018] [Pubmed]

  • Burt JB, Demirtas M, Eckner WJ, Navejar N, Ji JL, Martin WJ, Bernacchia A, Anticevic A, Murray JD (2018)
    Hierarchy of transcriptomic specialization across human cortex captured by structural neuroimaging topography.
    Nature Neuroscience 21:1251
    [DOI: 10.1038/s41593-018-0195-0] [Pubmed]

  • Murray JD, Demirtas M, Anticevic A (2018)
    Biophysical modeling of large-scale brain dynamics and applications for computational psychiatry.
    Biological Psychiatry: Cognitive Neuroscience and Neuroimaging 3:777
    [DOI: 10.1016/j.bpsc.2018.07.004] [Pubmed]

  • Murray JD, Wang X-J (2018)
    Cortical circuit models in psychiatry: linking disrupted excitation-inhibition balance to cognitive deficits associated with schizophrenia.
    In: Anticevic A, Murray JD, eds., Computational Psychiatry: Mathematical Modeling of Mental Illness. San Diego: Academic Press.
    [DOI: 10.1016/B978-0-12-809825-7.00001-8] [PDF]
[Return to top]

2017

  • Murray JD*, Jaramillo JH*, Wang X-J (2017) (* denotes equal contribution)
    Working memory and decision-making in a frontoparietal circuit model.
    Journal of Neuroscience 37:12167
    [DOI: 10.1523/JNEUROSCI.0343-17.2017] [Pubmed] [PDF]

  • Yang GJ, Murray JD, Glasser M, Pearlson GD, Krystal JH, Schleifer C, Repovs G, Anticevic A (2017)
    Altered global signal topography in schizophrenia.
    Cerebral Cortex 27:5156
    [DOI: 10.1093/cercor/bhw297] [PubMed] [PDF]

  • Anticevic A, Murray JD (2017)
    Rebalancing altered computations: considering the role of neural excitation and inhibition balance across the psychiatric spectrum. (Commentary)
    Biological Psychiatry 81:816
    [DOI: 10.1016/j.biopsych.2017.03.019] [Pubmed] [PDF]

  • Foss-Feig JH, Adkinson BD, Ji JL, Yang GJ, Srihari VH, McPartland JC, Krystal JH, Murray, JD, Anticevic A (2017)
    Searching for cross-diagnostic convergence: neural mechanisms governing excitation and inhibition balance in schizophrenia and autism spectrum disorders.
    Biological Psychiatry 81:848
    [DOI: 10.1016/j.biopsych.2017.03.005] [Pubmed] [PDF]

  • Krystal JH, Anticevic A, Yang GJ, Dragoi G, Driesen NR, Wang X-J, Murray JD (2017)
    Impaired tuning of neural ensembles and the pathophysiology of schizophrenia: a translational and computational neuroscience perspective.
    Biological Psychiatry 81:874
    [DOI: 10.1016/j.biopsych.2017.01.004] [Pubmed] [PDF]

  • Lam NH, Borduqui T, Hallak J, Roque AC, Anticevic A, Krystal JH, Wang X-J, Murray JD (2017)
    Effects of altered excitation-inhibition balance on decision making in a cortical circuit model.
    bioRxiv 10.1101/100347
    [DOI: 10.1101/100347]

  • Krystal JH, Murray JD, Chekroud A, Corlett PR, Yang GJ, Wang X-J, Anticevic A (2017)
    Computational psychiatry and the challenge of schizophrenia. (Commentary)
    Schizophrenia Bulletin 43:473
    [DOI: 10.1093/schbul/sbx025] [Pubmed] [PDF]

  • Murray JD, Anticevic A (2017)
    Computational modeling approaches to psychiatry.
    In: Kaplan and Sadock's Comprehensive Textbook of Psychiatry, 10th ed.
    [PDF]

  • Murray JD, Anticevic (2017)
    Toward understanding thalamo-cortical dysfunction in schizophrenia through computational models of circuit dynamics.
    Schizophrenia Research 180:70
    [DOI: 10.1016/j.schres.2016.10.021] [PubMed] [PDF]

  • Starc M*, Murray JD*, Santamauro N, Savic A, Diehl C, Cho YT, Srihari V, Morgan PT, Krystal JH, Wang X-J, Repovs G, Anticevic A (2017) (* denotes equal contribution)
    Schizophrenia is associated with a pattern of spatial working memory deficits consistent with cortical disinhibition.
    Schizophrenia Research 181:107
    [DOI: 10.1016/j.schres.2016.10.011] [PubMed] [PDF]

  • Murray JD, Bernacchia A, Roy NA, Constantinidis C, Romo R, Wang X-J (2017)
    Stable population coding for working memory coexists with heterogeneous neural dynamics in prefrontal cortex.
    Proceedings of the National Academy of Sciences 114:394
    [DOI: 10.1073/pnas.1619449114] [Pubmed] [PDF]
[Return to top]

2016

  • Krystal JH, Anticevic A, Murray JD, Glahn DC, Driesen NR, Yang GJ, Wang X-J (2016)
    Clinical heterogeneity arising from categorical and dimensional features of the neurobiology of psychiatric diagnoses: insights from neuroimaging and computational neuroscience.
    In: Computational Psychiatry: New Perspectives on Mental Illness, edited by A. D. Redish and J. A. Gordon. Strüngmann Forum Reports, vol. 20, J. Lupp, series editor. Cambridge, MA: MIT Press
    [PDF]

  • Mejias JF, Murray JD, Kennedy H, Wang X-J (2016)
    Feedforward and feedback frequency-dependent interactions in a large-scale laminar network of the primate cortex.
    Science Advances 2:e1601335
    [DOI: 10.1126/sciadv.1601335] [Pubmed] [PDF]

  • Yang GR, Murray JD, Wang X-J (2016)
    Dendritic disinhibition as a mechanism for pathway-specific gating.
    Nature Communications 7:12815
    [DOI: 10.1038/ncomms12815] [PubMed] [PDF]

  • Zagha E, Murray JD, McCormick DA (2016)
    Simulating cortical feedback modulation as changes in excitation and inhibition in a cortical circuit model.
    eNeuro 0208-16.2016
    [DOI: 10.1523/ENEURO.0208-16.2016] [PubMed] [PDF]

  • Arnsten AFT, Murray JD, Seo H, Lee D (2016)
    Ketamine’s antidepressant actions: potential mechanisms in the primate medial prefrontal circuits that represent aversive experience. (Commentary)
    Biological Psychiatry 79:713
    [DOI: 10.1016/j.biopsych.2016.02.014] [PubMed] [PDF]

  • Yang GJ, Murray JD, Repovs G, Cole MW, Wang X-J, Glahn DC, Krystal JH, Pearlson GD, Anticevic A (2016)
    Functional hierarchy underlies preferential connectivity disturbances in schizophrenia.
    Proceedings of the National Academy of Sciences 113:E219
    [DOI: 10.1073/pnas.1508436113] [PubMed] [PDF]

  • Cole MW, Yang GJ, Murray JD, Repovs G, Anticevic A (2016)
    Functional connectivity change as shared signal dynamics.
    Journal of Neuroscience Methods 259:22
    [DOI: 10.1016/j.jneumeth.2015.11.011] [PubMed] [PDF]
[Return to top]

2015

  • Anticevic A*, Haut K*, Murray JD, Repovs G, Yang GJ, Cole MW, McEwen SC, Bearden CD, Addington J, Goodyear B, Cadenhead KS, Mirzakhanian H, Cornblatt BA, Olvet D, Mathalon DH, McGlashan TH, Perkins DO, Belger A, Seidman LJ, Thermenos H, Tsuang MT, van Erp TGM, Walker EF, Hamann S, Woods SW, Qiu M, Cannon TD (2015) (* equal contribution)
    Association of thalamic dysconnectivity and conversion to psychosis in youth and young adults at elevated clinical risk.
    JAMA Psychiatry 72:882
    [DOI: 10.1001/jamapsychiatry.2015.0566] [PubMed] [PDF]

  • Anticevic A*, Murray JD*, Barch DM (2015) (* equal contribution)
    Bridging levels of understanding in schizophrenia through computational modeling.
    Clinical Psychological Science 3:433
    [DOI: 10.1177/2167702614562041] [PubMed] [PDF]

  • Anticevic A, Corlett PR, Cole MW, Savic A, Gancsos M, Tang Y, Repovs G, Murray JD, Driesen NR, Morgan PT, Xu K, Wang F, Krystal JH (2015)
    N-methyl-D-aspartate receptor antagonist effects on prefrontal cortical connectivity better model early than chronic schizophrenia.
    Biological Psychiatry 77:569
    [DOI: 10.1016/j.biopsych.2014.07.022] [PubMed] [PDF]

  • Anticevic A*, Hu X*, Deng W, Hu J, Xiao Y, Li F, Bi F, Cole MW, Savic A, Yang GJ, Repovs G, Murray JD, Wang X-J, Huang X, Lui S, Krystal JH, Qiyong G (2015) (* equal contribution)
    Early-course unmedicated schizophrenia patients exhibit elevated prefrontal connectivity associated with longitudinal change.
    Journal of Neuroscience 35:267
    [DOI:10.1523/jneurosci.2310-14.2015] [PubMed] [PDF]
[Return to top]

2014

  • Murray JD, Bernacchia A, Freedman DJ, Romo R, Wallis JD, Cai X, Padoa-Schioppa C, Pasternak T, Seo H, Lee D, Wang X-J (2014)
    A hierarchy of intrinsic timescales across primate cortex.
    Nature Neuroscience 17:1661
    [DOI: 10.1038/nn.3862] [PubMed] [PDF]

  • Anticevic A, Cole MW, Repovs G, Murray JD, Brumbaugh MS, Winkler AM, Savic A, Krystal JH, Pearlson GD, Glahn DC (2014)
    Characterizing thalamo-cortical disturbances in schizophrenia and bipolar illness.
    Cerebral Cortex 24:3116
    [DOI: 10.1093/cercor/bht165] [PubMed] [PDF]

  • Anticevic A, Yang G, Savic A, Murray JD, Cole MW, Repovs G, Pearlson GD, Glahn DC (2014)
    Mediodorsal and visual thalamic connectivity differ in schizophrenia and bipolar disorder with and without psychosis history.
    Schizophrenia Bulletin 40:1227
    [DOI: 10.1093/schbul/sbu100] [PubMed] [PDF]

  • Yang G*, Murray JD*, Repovs G, Cole MW, Savic A, Glasser MF, Krystal JH, Wang X-J, Pearlson GD, Glahn DC, Anticevic A (2014) (* equal contribution)
    Altered global brain signal in schizophrenia.
    Proceedings of the National Academy of Sciences 111:7438
    [DOI: 10.1073/pnas.1405289111] [PubMed] [PDF]

  • Murray JD, Anticevic A, Gancsos M, Ichinose M, Corlett PR, Krystal JH, Wang X-J (2014)
    Linking microcircuit dysfunction to cognitive impairment: effects of disinhibition associated with schizophrenia in a cortical working memory model.
    Cerebral Cortex 24:859
    [DOI: 10.1093/cercor/bhs370] [PubMed] [PDF]
[Return to top]

2013

  • Anticevic A, Cole M, Repovs G, Savic A, Driesen NR, Yang G, Cho YT, Murray JD, Glahn DC, Wang X-J, Krystal JH (2013)
    Connectivity, pharmacology and computation: towards a mechanistic understanding of neural system dysfunction in schizophrenia.
    Frontiers in Psychiatry 4:169
    [DOI: 10.3389/fpsyt.2013.00169] [PubMed] [PDF]
[Return to top]

2012

  • Anticevic A, Cole MW, Murray JD, Corlett PR, Wang X-J, Krystal JH (2012)
    The role of default network deactivation in cognition and disease.
    Trends in Cognitive Sciences 16:584-592
    [DOI: 10.1016/j.tics.2012.10.008] [PubMed] [PDF]

  • Anticevic A, Gancsos M, Murray JD, Repovs G, Driesen NR, Ennis DJ, Niciu MJ, Morgan PT, Smith M, Wang X-J, Krystal JH*, Corlett PR* (2012) (* equal contribution)
    NMDA receptor function in large-scale anticorrelated neural systems with implications for cognition and schizophrenia.
    Proceedings of the National Academy of Sciences 109:16720-16725
    [DOI: 10.1073/pnas.1208494109] [PubMed] [PDF]
[Return to top]

2011

[Return to top]

2008

  • Jacques V, Murray JD, Marquier F, Chauvat D, Grosshans F, Treussart F, Roch J-F (2008)
    Enhancing single-molecule photostability by optical feedback from quantum jump detection.
    Applied Physics Letters 93:203307
    [DOI: 10.1063/1.3013843] [PDF]

  • Li D, Dong Y, Ramos RG, Murray JD, Dementyev AE, Barrett SE (2008)
    Intrinsic origin of spin echoes in dipolar solids generated by strong pi-pulses.
    Physical Review B 77:214306
    [DOI: 10.1103/PhysRevB.77.214306] [PDF]
[Return to top]