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INFORMATION FOR

Science Tools

Clustering of Motifs upstream of Coexpressed Genes from Microarray Data

Clustering of Motifs upstream of Coexpressed Genes from Microarray Data

BioProspector http://bioprospector.stanford.edu/
CREME https://creme.dcode.org/

Clustering of TFBS or Motifs

Clustering of TFBS or Motifs

Cister https://zlab.bu.edu/~mfrith/cister.shtml
GALA https://globin.bx.psu.edu/
RVISTA https://rvista.dcode.org/
TraFaC https://trafac.cchmc.org/trafac/index.jsp

Genetic Resources/Tools

Genetic Resources/Tools

Genome Evolutionary Comparative Analysis Tools

Genome Evolutionary Comparative Analysis Tools

Name URL Genomic Sequences from
ECR Browser https://ecrbrowser.dcode.org/ human/mouse/fugu
GALA https://globin.bx.psu.edu/ human/mouse
UCSC http://www.genome.ucsc.edu/ human/mouse/rat
VISTA http://pipeline.lbl.gov/ human/mouse/rat

Pattern Finding

Pattern Finding

ANN-Spec http://www.cbs.dtu.dk/services/DNAarray/ann-spec.html
MEME

http://meme.sdsc.edu/meme4_4_0/intro.html


Phylogenetic Footprinting

Transcription Factor Binding Site Analysis

Transcription Factor Binding Site Analysis

CONSITE http://consite.genereg.net
RVISTA https://rvista.dcode.org/
TESS http://www.cbil.upenn.edu/tess/
TRANSFAC https://digitalinsights.qiagen.com/