Data Processing and Retrieval

Primary basecalls and read quality information will be provided by default in HDF5 and FASTA/FASTQ formats upon sequencing completion. 

Secondary analysis can be performed as an option, and, if selected, will be accompanied by reports containing graphical outputs and quality metrics, such as Filtering metrics (csv), Filtered Reads (fasta), Control Reads (cmp.h5), Control Summary (csv), Aligned Reads (cmp.h5, bam, bai), Coverage (gff, bed) and Variants (vcf, bed, gff.gz). If you have selected the Aligned Reads option, please provide a FASTA file with your reference sequence, or a direct URL from where we can download the file.