CPIRT Publications

• Increased prevalence of autoantibodies neutralizing IFNλ2/3 in young individuals with cystic fibrosis.Groen K, Tran C, Kuratli R, Egan ME, Trück J, Bruscia EM, Emmenegger M, Hale BG. J Hum Immun. 2026 Mar 2; 2026 Jan 12. PMID: 41608054.
• Unravelling the Immunological Enigma of Sickle Cell Disease: Current Understanding and Future Directions.Jamwal S, Calhoun C, Mohanty S, Montgomery RR, Krishnamurti L, Shaw AC, Yildirim I. Immunology. 2026 Mar; 2025 Dec 12. PMID: 41387179.
• Harnessing mucosal immunity for protective vaccines.Kwon DI, Bhagchandani SH, Ehrenzeller SA, Iwasaki A. Nat Rev Immunol. 2026 Feb 16; 2026 Feb 16. PMID: 41699393.
• Neonatal Sepsis from 2014-2024: The Resurgence of Gram-Negative Rods.Fleiss N, Murray TS, Feinn RS, Peaper DR, Gallagher PG, Bizzarro MJ. J Pediatr. 2026 Feb 13; 2026 Feb 13. PMID: 41692228.
• A tiled amplicon protocol for culture-free whole-genome sequencing of M. tuberculosis from clinical specimens.Kalinich CC, Gonzalez FL, Osmaston A, Breban MI, Distefano I, Leon C, Coronel J, Tan G, Crudu V, Ciobanu N, Codreanu A, Solano W, Ráez J, Sheen P, Zimic M, Allicock OM, Chaguza C, Wyllie AL, Brandt M, Weinberger DM, Sobkowiak B, Cohen T, Grandjean L, Grubaugh ND, Redmond SN. J Clin Microbiol. 2026 Feb 9; 2026 Feb 9. PMID: 41660836.
• Immune-mediated protection and enhancement of dengue drives patterns of infant cases in Brazil.Hitchings MDT, Huang AT, Ranzani OT, García-Carreras B, Nogueira ML, Ko AI, Croda J, Salje H, Cummings DAT. Nat Commun. 2026 Feb 6; 2026 Feb 6. PMID: 41651817.
• Legionella Lem26 functions as an ATG8-activated effector that inhibits host autophagy.Parducho KR, Yang Z, Guinn E, Choi D, Nag S, Melia TJ, Roy CR. mBio. 2026 Feb 5; 2026 Feb 5. PMID: 41641997.
• Decline in Community-Acquired Alveolar Pneumonia Positive for Respiratory Syncytial Virus in Hospitalized Children Following Implementation of Pneumococcal Conjugate Vaccine (PCV) in Israel.Dagan R, van der Beek BA, Grupel T, Greenberg D, Keren-Naus A, Ben-Shimol S, Weinberger DM. Clin Infect Dis. 2026 Feb 4. PMID: 40052957.
• A Tutorial on Implementing Statistical Methods for Estimating Excess Death With a Case Study and Simulations on Estimating Excess Death in the Post-COVID-19 United States.Rountree L, Zimmermann L, Teed L, Weinberger DM, Mukherjee B. Stat Med. 2026 Feb. PMID: 41677307.
• Proximal Pulmonary Artery Stiffening as a Biomarker of Cardiopulmonary Aging.De Man R, Cai Z, Doddaballapur P, Guerrera N, Regan A, Lin L, Schwarz E, Justet A, Abu Hussein NS, Di Palo J, Cavinato C, Raredon MSB, Heerdt PM, Singh I, Yan X, Kang MJ, Bruns DR, Lee PJ, Tellides G, Humphrey JD, Kaminski N, Ramachandra AB, Manning EP. Aging Cell. 2026 Feb. PMID: 41589414.
• The impact of large-scale release of Wolbachia mosquitoes on dengue incidence in Campo Grande, Brazil: an ecological study.de Morais Batista F, Carcamo PM, Nelson E, da Silva Neto AB, Tsuha DH, Lahdo V, Dos Santos VR, Ribeiro GS, da Silva Lopes R, Amadeu P, Ferreira Mendes Blanco MV, da Costa TR, de Melo Chalegre KD, Riback TIS, da Silva CC, Ranzani OT, Cummings DAT, Andrews JR, Ko AI, Hitchings MDT, Anders KL, Moreira LA, Maymone Gonçalves CC, Croda J. Lancet Reg Health Am. 2026 Feb; 2025 Dec 2. PMID: 41438239.
• The Erosion of a Pillar of Public Health: ACIP's Role and the Future of U.S. Vaccine Policy Post-June 2025.Asturias EJ, Schechter R, Talbot HK, Boom J, Brooks OT, Chen LH, Chu HY, Cineas S, Hawkinson DJ, Kamboj M, Loehr J, Lyons KL, Maldonado YA, Moser CA, Roberts MW, Shaw AC, Wiley Z, Zucker JR, Brewer NT. Clin Infect Dis. 2026 Jan 29; 2026 Jan 29. PMID: 41607311.
• Estimating the burden of RSV- and influenza-associated ED visits, hospitalizations, ICU admissions, and deaths across age and socioeconomic groups in New York State, 2005-2019.Xu H, Pitzer VE, Warren JL, Shapiro ED, Perniciaro S, Weinberger DM. BMC Infect Dis. 2026 Jan 28; 2026 Jan 28. PMID: 41606523.
• Epidermal growth factor receptor regulates Beclin-1 in hyperoxic acute lung injury.Harris ZM, Korde A, Khoury J, Manning EP, Stanley G, Shin Y, Mitchell K, von der Schulenburg A, Sun Y, Hu B, Shin HJ, Joerns J, Clark B, Placek L, Unutmaz D, Moldobaeva A, Sharma L, Sauler M, Rajagopalan G, Zhang X, Wang H, Ghaedi M, Kang MJ, Koff JL. BMJ Open Respir Res. 2026 Jan 27; 2026 Jan 27. PMID: 41592865.
• Brain Age in Conduct Disorder:: A Mega-Analysis of the ENIGMA Antisocial Behavior Working Group.Dugré JR, Gao Y, Staginnus M, Marsh AA, Kypta-Vivanco A, Cubillo AI, Dietrich A, Bernhard A, Martinelli A, Dykstra AH, Smaragdi A, Sethi A, Bokde ALW, Franke B, Arango C, Boateng CPS, Stadler C, Freitag CM, Townsend CD, Monk CS, Hagan CC, Mitchell C, Dong D, Díaz DE, Brandeis D, Murphy D, Sukhodolsky DG, Sonuga-Barke EJS, Cardinale EM, Viding E, Kohls G, Schumann G, Cornwell H, Phillips H, Westerman HB, Chen H, Sagar-Ouriaghli I, Rogers JC, Buitelaar JK, Martinot JL, Glennon JC, Zhou J, Zhang J, Naaijen J, Castro-Fornieles J, Michalska KJ, Gonzalez-Madruga K, Ibrahim K, Sully K, Berluti K, Konrad K, Lamers K, Mycue LE, Passamonti L, Hyde LW, Oosterling M, Alonso MJP, Stevens MC, Craig M, Rosa-Justicia M, Ploe ML, Holz N, van der Wee NJA, Toschi N, Jabeen N, Raschle NM, Colins OF, Santosh P, Aggensteiner PM, Hoekstra PJ, Ming Q, Wu Q, Jackson RL, Ma R, Blair RJR, Vermeiren R, Pauli R, Roberts R, Burt SA, Bajaj S, Chester SC, Minosse S, Desrivieres S, Banaschewski T, Schulze UME, Chen X, Wang X, Sun X, Jiang Y, Jahanshad N, Thomopoulos SI, Ching CRK, Kang MJY, Thompson PM, Pine DS, Baskin-Sommers A, Cecil CAM, Aghajani M, Fairchild G, De Brito SA. bioRxiv. 2026 Jan 21; 2026 Jan 21. PMID: 41648388.
• Type IV Secretion System Drives Lipid Mixing.Chetrit D, Roy CR, Karatekin E. bioRxiv. 2026 Jan 15; 2026 Jan 15. PMID: 41648637.
• Psychotropic medications and their interactions with subcortical brain volume in bipolar disorder: An ENIGMA mega-analysis.King S, O'Connor J, Corley E, Tronchin G, Fontana E, Nabulsi L, Kang MJY, Radua J, Hallahan B, Abé C, Alda M, Alnæs D, Alonso-Lana S, Amoretti S, Bauer J, Benedetti F, Berger K, Berk M, Bøen E, Böhnlein J, Boye B, Bravi B, Canales-Rodríguez EJ, Dannlowski U, Demro C, Di Giorgio A, Diaz-Zuluaga AM, Elvsåshagen T, Favre P, Erwin-Grabner T, Forte MF, Fullerton JM, Furlong LS, Rossell SL, Glahn DC, Goldstein BI, Gotlib IH, Goya-Maldonado R, Green MJ, Grotegerd D, Gruber O, Haarman BCM, Hahn T, Hajek T, Hater L, Hermesdorf M, Houenou J, Howells FM, Karantonis JA, Kennedy KG, Kircher T, Klahn AL, Konowski M, Krämer B, Lahud E, Kuplicki R, Landén M, López-Jaramillo C, MacIntosh BJ, Meinert H, Meinert S, Melloni EMT, Mitchell PB, Mwangi B, Nenadić I, Overs BJ, Parker N, Pearlson G, Pomarol-Clotet E, Prisciandaro JJ, Quidé Y, Roberts G, Rodrigue A, Rodríguez-Cano E, Rauer L, Sacchet MD, Salvador R, Sambataro F, Satterthwaite TD, Savitz J, Scheffler F, Schürmeyer N, Shen C, Sim K, Soares JC, Solanes A, Soeiro-de-Souza MG, Sponheim SR, Stein DJ, Stein F, Temmingh HS, Teutenberg L, Thomopoulos SI, Urosevic S, Van Rheenen TE, Vieta E, Westlye LT, Wolf DH, Wu MJ, Yatham LN, Zunta-Soares GB, Cannon DM, Thompson PM, Andreassen OA, Ching CRK, McDonald C. Mol Psychiatry. 2026 Jan 15; 2026 Jan 15. PMID: 41540091.
• MIF-mediated reprogramming of myeloid lineage within the glioma tumor microenvironment impacts the efficacy of immune stimulatory gene therapy.Zhu Z, Kanis NC, George AE, Albdewi M, Li Y, Mujeeb AA, McClellan BL, Singh G, Liu J, Al-Holou WN, Heth JA, Welch JD, Lathia JD, Lowenstein PR, Bucala R, Castro MG. bioRxiv. 2026 Jan 14; 2026 Jan 14. PMID: 41648606.
• Pathogenic role of MIF receptor (CD74) expressing T cells in inflammatory arthritis.Doherty E, Osmani L, Bilsborrow J, Par-Young J, Choi S, Tilstam P, Shin M, Piecychna M, Cai H, Leng L, Kim WU, Kang I, Bucala R. Proc Natl Acad Sci U S A. 2026 Jan 13; 2026 Jan 8. PMID: 41505516.
• X-inactive specific transcript (XIST) can determine sex differences in cardiovascular drug responses: focus on RNA therapeutics.Yarovinsky TO, Ramgolam VS, Knezevic IR, Stachenfeld NS, Bender JR. Front Pharmacol. 2025; 2026 Jan 12. PMID: 41601966.
• Proceedings of the inaugural symposium on dengue human challenge studies "Challenging the norm: Accelerating dengue countermeasures through human studies".Kalimuddin S, Waickman AT, Avirutnan P, Alam MS, Chiu C, Young BE, Woods CW, Fay PC, Pakir SK, Manski-Nankervis JA, Bolte C, Pengilley A, Cavaleri M, Lim JCW, Thomas SJ, Ko AI, Ooi EE. PLoS Negl Trop Dis. 2026 Jan; 2026 Jan 9. PMID: 41511926.
• RIG-I RNA agonist activates immunostimulatory macrophages to enhance checkpoint immunotherapy for glioblastoma.Xu H, Lee S, Leser F, Fedorova O, Lu P, Song E, Touat M, Eichmann A, Iwasaki A, Pyle AM, Thomas JL. bioRxiv. 2026 Jan 8; 2026 Jan 8. PMID: 41542495.
• Machine learning models predict long COVID outcomes based on baseline clinical and immunologic factors.Doni Jayavelu N, Samaha H, Wimalasena ST, Hoch A, Gygi JP, Gabernet G, Ozonoff A, Liu S, Milliren CE, Levy O, Baden LR, Melamed E, Ehrlich LIR, McComsey GA, Sekaly RP, Cairns CB, Haddad EK, Schaenman J, Shaw AC, Hafler DA, Montgomery RR, Corry DB, Kheradmand F, Atkinson MA, Brakenridge SC, Agudelo Higuit NI, Metcalf JP, Hough CL, Messer WB, Pulendran B, Nadeau KC, Davis MM, Gen LN, Fernandez Sesma A, Simon V, Krammer F, Kraft M, Bime C, Calfee CS, Erle DJ, Langelier CR, Guan L, Maecker HT, Peters B, Kleinstein SH, Reed EF, Augustine AD, Diray-Arce J, Becker PM, Rouphael N, Altman MC. Commun Med (Lond). 2026 Jan 3; 2026 Jan 3. PMID: 41484172.
• Going for three: what is the role for triplex testing for HSV-1, HSV-2, and VZV?Peaper DR. ASM Case Rep. 2026 Jan; 2025 Nov 4. PMID: 41503529.
• Normalization of Seasonality and Age Distribution of Pediatric RSV Infection Following the Pandemic Disruption in the Netherlands.Rave N, de Bruijne MEM, Stellato RK, Bannier MAGE, Weinberger DM, Löwensteyn YN, Wildenbeest JG, Bont LJ. Open Forum Infect Dis. 2026 Jan; 2025 Dec 30. PMID: 41477533.
• Corrigendum: "Decreased T helper 1 cell function underlies recurrent sinopulmonary infections in the 17q12 deletion syndrome" EBioMedicine, 2025, Feb:112:105578.Shin JJ, Shin HJ, Gutierrez A, Yoo N, Par-Young J, Osmani L, Shin MS, Sanchez-Lara PA, Bucala R, Soffer G, Kang I. EBioMedicine. 2026 Jan; 2025 Dec 24. PMID: 41447758.
• The lingering shadow of epidemics: post-acute sequelae across history.Miller CM, Moen JK, Iwasaki A. Trends Immunol. 2026 Jan; 2025 Dec 4. PMID: 41350176.
• Effectiveness of the TAK-003 dengue vaccine in adolescents during the 2024 outbreak in São Paulo, Brazil: a test-negative, case-control study.Ranzani OT, Lazar Neto F, Mareto LK, Brumatti TS, de Oliveira RD, da Silva PV, Dos Santos ER, D' Agostini TL, De Paula RAC, Dean NE, Ko AI, Cummings DAT, Andrews JR, Hitchings MDT, Croda J. Lancet Infect Dis. 2026 Jan; 2025 Aug 19. PMID: 40845862.
• COVID-19-associated neurological and psychological manifestations.Wilson JE, Gurdasani D, Helbok R, Ozturk S, Fraser DD, Filipović SR, Peluso MJ, Iwasaki A, Yasuda CL, Bocci T, Priori A, Altmann D, Alwan NA, Wesley Ely E. Nat Rev Dis Primers. 2025 Dec 24; 2025 Dec 24. PMID: 41444262.
• Variations in annual dengue intensities are explained by temperature anomalies.Porzucek AJ, Lopes R, Chew YT, Li K, Brady OJ, Warren JL, Carlson CJ, Weinberger DM, Grubaugh ND. medRxiv. 2025 Dec 21; 2025 Dec 21. PMID: 41445602.
• Mass SARS-CoV-2 testing in US correctional facilities during the pandemic: a longitudinal analysis.Kim C, Kennedy BS, Lansing M, Richeson RP, Hitchings M, Ko AI, Lind ML. BMJ Public Health. 2025; 2025 Dec 18. PMID: 41431610.
• Evaluation of the Hologic Panther Fusion investigational use only assays for gastrointestinal bacterial pathogens.Yakubu RR, Merwede J, Viglione B, Patel V, Peaper DR. J Clin Microbiol. 2025 Dec 17; 2025 Nov 14. PMID: 41235929.
• Do discharge delays explain longer stays at veterans health administration hospitals?Lucas BP, Weinberger DM, Vashi AA, Smith J, Korves C, Justice AC, Neugaard BI, Davies L. BMC Health Serv Res. 2025 Dec 12; 2025 Dec 12. PMID: 41387858.
• Decontamination approaches and strategies for the prevention of sink drain-related healthcare-associated infections.Tanner WD, Mathew T, Roberts SC, Dieter L, Healy HG, Peaper DR, Peccia J, Martinello RA. Clin Microbiol Rev. 2025 Dec 11; 2025 Nov 21. PMID: 41269016.
• Barriers perpetuating the lack of casualty data from neglected conflict settings.Wild HBH, Ratnayake A, Sanou SYG, Nacanabo YAR, Asgedom AA, Lawan K, Cheran A, Rogers SO Jr, Ko AI, Meda N, Wren SM. Br J Surg. 2025 Dec 10. PMID: 41369649.
• Integrative single-cell RNA and ATAC sequencing reveals the impact of chronic cigarette smoking on lung epithelial responses to influenza and hyperoxia.Cha PC, Zou Z, Nouws J, Brewster RM, Dela Cruz CS, Sharma L, Yan X, Sauler M. Respir Res. 2025 Dec 9; 2025 Dec 9. PMID: 41366391.
• Zika Virus Neutralizing Antibody Responses Elicited by Vaccination or Infection.Galindo CM, Ling Y, Kpamegan E, Nascimento EJM, Perez-Guzman E, Ticona JPA, Chan KF, Castanha P, Buddhari D, Farmer A, Fernandez S, Baldwin WR, Kaiser M, Fernandes J, Zahralban-Steele M, Brinkman A, Rindfleisch T, Moss KJ, Rouphael N, El Sahly HM, Marques ETA, Ko AI, Acosta CJ. Open Forum Infect Dis. 2025 Dec; 2025 Dec 3. PMID: 41346444.
• Dysregulated alveolar type 2 epithelial cell proteostasis promotes fibrogenic macrophage migration inhibitory factor-CD74 signaling.Kim SH, Nouws J, Ruwisch J, Woodard GA, Cooley J, Khoury J, Sun H, Doherty E, Piecychna M, Manning EP, Kang MJ, Bruscia EM, Wei H, Zhang Y, Yarovinsky TO, Hwa J, Zacharias WJ, Ingram J, Lee CG, Elias JA, Kaminski N, Redente EF, Herzog EL, Prasse A, Bucala R, Sauler M. Sci Transl Med. 2025 Dec 3; 2025 Dec 3. PMID: 41337540.
• Trends in Colon Cancer Colectomy Volume and Inpatient Costs, 2018-2023: A Medicare Analysis.Newton LE, Korves C, Zwain G, Fowler XP, Bellamkonda K, Rosa S, Denny J, Huynh J, Weinberger DM, Justice A, Vashi A, Goodney PP, Wilson MZ, Davies L. J Surg Res. 2025 Dec; 2025 Dec 2. PMID: 41337807.
• T-cell responses to SARS-CoV-2 vaccinations in adults with Down syndrome - a prospective cohort study.Hensen LCM, Streng BMM, van Wijk F, Nierkens S, van Binnendijk RS, Buisman AM, Coppus AMW, Geurts van Kessel CH, de Graaf G, van der Klis FR, Lamberts R, Vidarsson G, Ruckwardt TJ, de Vries E, de Vries RD, Weijerman ME, Weinberger DM, Wildenbeest JG, Bont LJ, Delemarre EM. Hum Vaccin Immunother. 2025 Dec; 2025 Nov 6. PMID: 41196011.
• Evaluating COVID-19 severity prediction and immune dynamics with NULISAseq: Insights from the IMPACC study.Abe K, Holmes TH, Nguyen TT, Kim-Schulze S, Levy O, Baden LR, Melamed E, Ehrlich LIR, McComsey GA, Sekaly RP, Cairns CB, Haddad EK, Shaw AC, Hafler DA, Montgomery RR, Corry DB, Kheradmand F, Atkinson MA, Brakenridge SC, Agudelo Higuita NI, Metcalf JP, Hough CL, Messer WB, Pulendran B, Nadeau KC, Davis MM, Fernandez-Sesma A, Simon V, Kraft M, Bime C, Calfee CS, Erle DJ, Schaenman J, Reed EF, Ozonoff A, Peters B, Kleinstein SH, Augustine AD, Diray-Arce J, Becker PM, Rouphael N, Maecker HT. J Immunol. 2025 Dec 1. PMID: 41166719.
• Cutaneous Lupus Features Specialized Stromal Niches and Altered Retroelement Expression.Gehlhausen JR, Kong Y, Baker E, Ramachandran S, Koumpouras F, Ko CJ, Vesely M, Little AJ, Damsky W, King B, Iwasaki A. J Invest Dermatol. 2025 Dec; 2025 May 21. PMID: 40409678.
• New viability assays for Acanthamoeba castellanii trophozoites and cysts allow rapid assessment of drug activity.Flynn CA, Colón-Ríos RI, Harmez A, Flynn WF, Kazmierczak BI. J Infect Dis. 2025 Nov 27; 2025 Nov 27. PMID: 41297556.
• The cutaneous response to a mosquito bite is influenced by the diurnal rhythm.Raduwan H, Park J, Marín-López A, Skadow MH, Chen TY, Flavell RA, Shaw AC, Montgomery RR, Fikrig E. iScience. 2025 Nov 21; 2025 Sep 30. PMID: 41146707.
• Science for vaccine policy: Independent review of the September 2025 ACIP processes, deliberations and votes.Asturias EJ, Chen LH, Shaw AC, Moser CA, Maldonado YA, Zucker JR, Chu HY, Talbot HK, Cineas S, Lyons K, Schechter R, Kamboj M, Wiley Z, Brewer NT. Vaccine. 2025 Nov 20; 2025 Oct 23. PMID: 41135287.
• Editorial: The heme oxygenase system in immunity.Costa DL, Bruscia EM, Willis D. Front Immunol. 2025; 2025 Nov 19. PMID: 41346632.
• Factors associated with persistent bloodstream infection in the Neonatal Intensive Care Unit.Lee H, Fleiss N, Bizzarro M, Feinn R, Rychalsky M, Puthawala C, Peaper DR, Murray TS. J Perinatol. 2025 Nov 7; 2025 Nov 7. PMID: 41203901.
• Galectin-9 inhibition of the MIF-CD74/CD44 pathway suppresses chronic arthritis.Li M, Nam MK, Kim JG, Kang J, Park SH, Lee SH, Kim C, Song D, Jin J, Yoo SA, Bucala R, Kim WU. Mol Ther. 2025 Nov 5; 2025 Aug 11. PMID: 40798883.
• Brain morphology mediators of the link between childhood trauma and bipolar disorder: a large-scale international analysis.Tozzi L, Dauvermann MR, Corley E, Fernandes A, Kang MJY, Im Y, Nabulsi L, Goya-Maldonado R, Berger K, Hermesdorf M, Blumberg HP, Colic L, Van Rheenen TE, Ringin E, Rossell SL, Karantonis JA, Furlong LS, Kircher T, Stein F, Dannlowski U, Grotegerd D, Soares JC, Wu MJ, Zunta-Soares GB, Mwangi B, Radua J, Vilajosana E, Vieta E, Green MJ, Olie E, Clain G, Benedetti F, Melloni E, Bravi B, Janiri D, Vecchio D, Piras F, Banaj N, Sani G, Roberts G, Fullerton JM, Overs BJ, Mitchell PB, Savitz J, Yatham LN, Houenou J, Leboyer M, Rodrigue A, Glahn DC, Thomopoulos SI, Jahanshad N, Thompson PM, Andreassen OA, Ching CRK, Cannon DM, Quidé Y. medRxiv. 2025 Nov 4; 2025 Nov 4. PMID: 41282728.
• A multiomics recovery factor predicts long COVID in the IMPACC study.Gabernet G, Maciuch J, Gygi JP, Moore JF, Hoch A, Syphurs C, Chu T, Doni Jayavelu N, Corry DB, Kheradmand F, Baden LR, Sekaly RP, McComsey GA, Haddad EK, Cairns CB, Rouphael N, Fernandez-Sesma A, Simon V, Metcalf JP, Agudelo Higuita NI, Hough CL, Messer WB, Davis MM, Nadeau KC, Pulendran B, Kraft M, Bime C, Reed EF, Schaenman J, Erle DJ, Calfee CS, Atkinson MA, Brakenridge SC, Melamed E, Shaw AC, Hafler DA, Augustine AD, Becker PM, Ozonoff A, Bosinger SE, Eckalbar W, Maecker HT, Kim-Schulze S, Steen H, Krammer F, Westendorf K, Peters B, Fourati S, Altman MC, Levy O, Smolen KK, Montgomery RR, Diray-Arce J, Kleinstein SH, Guan L, Ehrlich LI. J Clin Invest. 2025 Nov 3; 2025 Sep 9. PMID: 40924481.
• Corrigendum to "Particle size distribution of viable nebulized bacteriophage for the treatment of multi-drug resistant Pseudomonas aeruginosa" [Respiratory Medicine and Research 86 (2024) 101133].Thompson DL, Semersky Z, Feinn R, Huang P, Turner PE, Chan BK, Koff JL, Murray TS. Respir Med Res. 2025 Nov; 2025 Oct 8. PMID: 41067035.
• Changes in pneumococcal deaths in the USA following the COVID-19 pandemic.Shang L, Perniciaro S, Weinberger DM. Int J Infect Dis. 2025 Nov; 2025 Aug 29. PMID: 40886796.
• Type 2 immune responses are associated with less severe COVID-19 in a hospitalized cohort.Jayavelu ND, Qi J, Milliren CE, Ozonoff A, Liu S, Levy O, Baden LR, Melamed E, McComsey GA, Cairns CB, Schaenman J, Shaw AC, Hafler DA, Corry DB, Kheradmand F, Atkinson MA, Brakenridge SC, Agudelo Higuita NI, Metcalf JP, Hough CL, Messer WB, Pulendran B, Nadeau KC, Davis MM, Geng LN, Sesma AF, Simon V, Krammer F, Bime C, Calfee CS, Bosinger SE, Eckalbar W, Steen H, Maecker HT, Augustine AD, Diray-Arce J, Haddad EK, Sekaly RP, Kraft M, Woodruff PG, Erle DJ, Ehrlich LIR, Montgomery RR, Becker PM, Altman MC, Fourati S. J Allergy Clin Immunol Glob. 2025 Nov; 2025 Jun 12. PMID: 40709330.
• Microfluidics combined with electron microscopy for rapid and high-throughput mapping of antibody-viral glycoprotein complexes.Sewall LM, de Paiva Froes Rocha R, Gibson G, Louie M, Xie Z, Bangaru S, Tran AS, Ozorowski G, Mohanty S, Beutler N, Rogers TF, Burton DR, Shaw AC, Batista FD, Chocarro Ruiz B, Torrents de la Peña A, Ward AB. Nat Biomed Eng. 2025 Nov; 2025 Jun 3. PMID: 40461656.
• Microbiome signatures of Clostridioides difficile toxin production and toxin gene presence: a shotgun metagenomic approach.Kwon J, Correa MA, Kong Y, Pelletiers W, Wade M, Olson D, Pettigrew MM. mSphere. 2025 Oct 29; 2025 Sep 25. PMID: 40996044.
• IgA autoantibodies demonstrate a novel mechanism of MuSK myasthenia gravis pathology.Masi G, Chen K, Bayer AC, Bayarri-Olmos R, Pham MC, Wallace A, Falso S, Evoli A, Iorio R, Hoehn KB, Iwasaki A, Nowak RJ, O'Connor KC. Brain. 2025 Oct 28; 2025 Oct 28. PMID: 41147199.
• Improving immunotherapy responses by dual inhibition of macrophage migration inhibitory factor and PD-1.Tran TT, Sánchez-Zuno GA, Osmani L, Caulfield J, Valdez CN, Piecychna M, Leng L, Armstrong ME, Donnelly SC, Bifulco CB, Clister T, Kulkarni RP, Zhang L, Sznol M, Jilaveanu L, Kluger HM, Kang I, Bucala R. JCI Insight. 2025 Oct 22; 2025 Oct 22. PMID: 41122966.
• The capsule and genetic background, rather than specific individual loci, strongly influence in vitro pneumococcal growth kinetics.Chaguza C, Arends DW, Lo SW, Putri IH, York A, Lees JA, Wyllie AL, Weinberger DM, Bentley SD, de Jonge MI, Cremers AJH. Elife. 2025 Oct 21; 2025 Oct 21. PMID: 41118311.
• Circulating endothelial signatures correlate with worse outcomes in COVID-19, respiratory failure and ARDS.Costa Monteiro AC, Pickering H, Sarma A, Taylor CS, Jenkins MM, Hsu FM, Nadel B, Levy O, Baden LR, Melamed E, Ehrlich LIR, McComsey GA, Sekaly RP, Cairns CB, Haddad EK, Shaw AC, Hafler DA, Montgomery RR, Corry DB, Kheradmand F, Atkinson MA, Brakenridge SC, Higuita NIA, Metcalf JP, Hough CL, Messer WB, Pulendran B, Nadeau KC, Davis MM, Geng LN, Fernandez-Sesma A, Simon V, Krammer F, Kraft M, Bime C, Calfee CS, Erle DJ, Bosinger S, Eckalbar W, Maecker H, Rahman A, Guan L, Peters B, Kleinstein SH, Augustine AD, Diray-Arce J, Becker PM, Rouphael N, Agus M, Kulkarni H, Schaenmann JM, Salehi-Rad R, Matthay MA, Reed EF, Sapru A. Crit Care. 2025 Oct 14; 2025 Oct 14. PMID: 41088445.
• Assessing the effect of social contact structure on the impact of pneumococcal conjugate vaccines.Wong A, Kramer SC, Weinberger DM, Domenech de Cellès M. Sci Rep. 2025 Oct 7; 2025 Oct 7. PMID: 41057458.
• EROdicating arterial thrombosis with a novel endoplasmic reticulum oxidoreductase 1α inhibitor.Yarovinsky TO, Sharda AV, Hwa J. Mol Ther. 2025 Oct 1; 2025 Sep 19. PMID: 40975058.
• Prevalence and phenotype of food allergy in children with cystic fibrosis.Nguyen HP, Shabanova V, McCollum S, Polk B, Lee T, Whittington K, Cunha P, Bruscia EM, Egan ME, Emmenegger M, Leeds S. Ann Allergy Asthma Immunol. 2025 Oct; 2025 Jun 21. PMID: 40550267.
• A diverse family of bacterial deubiquitinases is defined by the Coxiella burnetii effector EmcB.Duncan-Lowey JK, Roy CR. Proc Natl Acad Sci U S A. 2025 Sep 30; 2025 Sep 25. PMID: 40996800.
• Intranasal hemagglutinin protein boosters induce protective mucosal immunity against influenza A viruses in mice.Moriyama M, Rodrigues G, Wang J, Jayewickreme R, Hudak A, Dong H, Homer RJ, Ma S, Iwasaki A. Proc Natl Acad Sci U S A. 2025 Sep 30; 2025 Sep 24. PMID: 40991437.
• In situ structures of the Legionella Dot/Icm T4SS identify the DotA-IcmX complex as the gatekeeper for effector translocation.Yue J, Heydari S, Park D, Chetrit D, Tachiyama S, Guo W, Botting JM, Wu S, Roy CR, Liu J. Proc Natl Acad Sci U S A. 2025 Sep 30; 2025 Sep 23. PMID: 40986344.
• Immunization with virus-like vesicle-based COVID-19 vaccine induces robust systemic and mucosal immunity.Yang L, Yarovinsky TO, Pham K, Xi Y, Lu P, Iwasaki A, Rose JK, Liu C. NPJ Vaccines. 2025 Sep 29; 2025 Sep 29. PMID: 41022870.
• A district-level ensemble model to enhance dengue prediction and control for the Mekong Delta Region of Vietnam.Draidi Areed W, Nguyen TTT, Quoc Do K, Nguyen T, Bui V, Nelson E, Warren JL, Doan QV, Sinh NV, Osborne NJ, Richards R, Tran NQL, Le H, Pham T, Hung TM, Nghiem S, Phung H, Chu C, Dubrow R, Weinberger DM, Phung D. PLoS Negl Trop Dis. 2025 Sep; 2025 Sep 29. PMID: 41022038.
• Exploring RSV Transmission Patterns in Different Age Groups in the United States.Li K, Pitzer VE, Weinberger DM. J Infect Dis. 2025 Sep 15. PMID: 40308004.
• Relating In Vivo Respiratory Syncytial Virus Infection Kinetics to Host Infectiousness in Different Age Groups.Li K, Bont LJ, Weinberger DM, Pitzer VE. J Infect Dis. 2025 Sep 15. PMID: 40085821.
• Topography and environmental deficiencies are associated with chikungunya virus exposure in urban informal settlements in Salvador, Brazil.Travis CT, Argibay HD, Pellizzaro M, de Oliveira D, Santana R, Palma FAG, Lustosa R, Santana JO, Souza FN, Alzate López YA, Reis MG, Ko AI, Diggle PJ, Ribeiro GS, Begon M, Costa F, Khalil H, Eyre MT. PLoS Negl Trop Dis. 2025 Sep; 2025 Sep 5. PMID: 40911655.
• Autophagy and Bacterial infections.Cadwell K, Abraham C, Bel S, Chauhan S, Coers J, Colombo MI, Davis JR, Hofius D, Nguyen HTT, Ogawa M, Roy CR, Shao F, Shizukuishi S, Stallings CL, Szczesna M, Taylor G, Thurston TL, Watson R, Wileman T, Xu Y, Zamboni DS. Autophagy Rep. 2025; 2025 Sep 1. PMID: 40910070.
• Neuroimmune pathophysiology of long COVID.Moen JK, Baker CA, Iwasaki A. Psychiatry Clin Neurosci. 2025 Sep; 2025 Jun 19. PMID: 40536011.
• Zika in Infants and Pregnancy (ZIP) study: results from a prospective international cohort study of prenatal Zika virus infection and adverse fetal and infant outcomes.Lebov JF, Nason M, Stolka KB, Ximenes R, Mussi-Pinhata MM, Moye J, Zorrilla CD, Velez Vega CM, Cordero JF, Scalabrin DMF, Ko AI, Moreira MEL, Galvão LA, Britt W, Marques ETA, Balmaseda A, Harris E, Arias JF, Schultz-Cherry S, Garces AL, Krebs NF, Ochoa TJ, Ugarte-Gil CA, Fogleman E, Gabriel E, Welton M, Irizarry CM, de Moura Negrini SB, Coutinho CM, de Barros Miranda-Filho D, Montarroyos UR, Cordeiro MT, Gajewski A, Osorio JE, Figueroa L. BMC Pregnancy Childbirth. 2025 Aug 30; 2025 Aug 30. PMID: 40885911.
• Unraveling the role of viral interference in disrupting biennial RSV epidemics in northern Stockholm.Li K, Hamrin J, Nilsson A, Weinberger DM, Pitzer VE. Nat Commun. 2025 Aug 30; 2025 Aug 30. PMID: 40885786.
• Advisory Committee on Immunization Practices at a Crossroads.Asturias EJ, Brewer NT, Brooks O, Chen LH, Chu HY, Cineas S, Loehr J, Jamieson DJ, Kamboj M, Kuchel GA, Lyons K, Maldonado YA, Moser CA, Schechter R, Shaw AC, Talbot K, Zucker JR. JAMA. 2025 Aug 26. PMID: 40522971.
• The role of complement in long COVID pathogenesis.Bayarri-Olmos R, Bain W, Iwasaki A. JCI Insight. 2025 Aug 22; 2025 Aug 22. PMID: 40857408.
• The Path Forward for Vaccine Policy in the United States.Chu HY, Brewer NT, Asturias EJ, Brooks O, Cineas S, Jamieson DJ, Kamboj M, Kuchel GA, Loehr J, Lyons K, Maldonado YA, Moser CA, Schechter R, Shaw AC, Talbot HK, Zucker JR, Chen LH. N Engl J Med. 2025 Aug 21; 2025 Jul 30. PMID: 40737616.
• Targeting macrophage migration inhibitory factor as a potential therapeutic strategy in colorectal cancer.Schneider KL, Claus L, Bucala R, Schulz-Heddergott R. Oncogenesis. 2025 Aug 20; 2025 Aug 20. PMID: 40835826.
• Bioluminescent imaging to investigate Coxiella burnetii pathogenesis identifies adipose tissue as a host niche for infection.Andrews JM, Roy CR. Infect Immun. 2025 Aug 12; 2025 Jun 30. PMID: 40586810.
• MICBG406A polymorphism reduces risk of mechanical ventilation and death during viral acute lung injury.Pickering H, Alipanah-Lechner N, Chen E, Duchen D, Maecker HT, Kim-Schulze S, Montgomery RR, Cotsapas C, Steen H, Krammer F, Langelier CR, Levy O, Baden LR, Melamed E, Ehrlich LI, McComsey GA, Sekaly RP, Cairns CB, Haddad EK, Shaw AC, Hafler DA, Corry DB, Kheradmand F, Atkinson MA, Brakenridge SC, Higuita NIA, Metcalf JP, Hough CL, Messer WB, Pulendran B, Nadeau KC, Davis MM, Sesma AF, Simon V, Kraft M, Bime C, Erle DJ, Schaenmann J, Ozonoff A, Peters B, Kleinstein SH, Augustine AD, Diray-Arce J, Becker PM, Rouphael N, Altman MC, Bosinger S, Eckalbar W, Calfee CS, Aguilar OA, Reed EF, Greenland JR, Calabrese DR. JCI Insight. 2025 Aug 8; 2025 Jul 3. PMID: 40608426.
• Characterization of Postural Orthostatic Tachycardia Syndrome in Long COVID: Self-reported Data From the LISTEN Study.Al Mouslmani M, Sawano M, Arun AS, Wu Y, Shah RM, Kaleem S, Zhou T, Murugiah K, Lu Y, Herrin J, Bishop P, Taub P, Peixoto AJ, Bhattacharjee B, Iwasaki A, Krumholz HM. JACC Adv. 2025 Aug. PMID: 40883051.
• Nirmatrelvir-ritonavir versus placebo-ritonavir in individuals with long COVID in the USA (PAX LC): a double-blind, randomised, placebo-controlled, phase 2, decentralised trial.Sawano M, Bhattacharjee B, Caraballo C, Khera R, Li SX, Herrin J, Christian D, Coppi A, Warner F, Holub J, Henriquez Y, Johnson MA, Goddard TB, Rocco E, Hummel AC, Mouslmani MA, Hooper WB, Putrino DF, Carr KD, Charnas L, De Jesus M, Nepert D, Abreu P, Ziegler FW 3rd, Spertus JA, Iwasaki A, Krumholz HM. Lancet Infect Dis. 2025 Aug; 2025 Apr 3. PMID: 40188838.
• Estimating the Serotype-Specific Association Between the Concentration of Vaccine-Induced Serum Antibodies and Protection Against Pneumococcal Colonization.Wong A, Warren JL, Fitch L, Perniciaro S, Dagan R, Weinberger DM. J Infect Dis. 2025 Jul 30. PMID: 40036886.
• Host-pathogen interaction profiling of nontypeable Haemophilus influenzae and Moraxella catarrhalis coinfection of bronchial epithelial cells.D'Mello A, Murphy TF, Wade M, Kirkham C, Kong Y, Tettelin H, Pettigrew MM. mSphere. 2025 Jul 29; 2025 Jun 10. PMID: 40492732.
• HKU5 bat merbecoviruses engage bat and mink ACE2 as entry receptors.Madel Alfajaro M, Keeler EL, Li N, Catanzaro NJ, Teng IT, Zhao Z, Grunst MW, Yount B, Schäfer A, Wang D, Kim AS, Synowiec A, Peña-Hernández MA, Zepeda S, Arinola R, Kaur R, Menasche BL, Wei J, Russell GA, Huck J, Song J, Ring A, Iwasaki A, Jangra RK, Lee S, Martinez DR, Mothes W, Uchil PD, Doench JG, Spaulding AB, Baric RS, Serebryannyy L, Tsybovsky Y, Zhou T, Douek DC, Wilen CB. Nat Commun. 2025 Jul 24; 2025 Jul 24. PMID: 40707428.
• Hematological and biochemical profiles, infection and habitat quality in an urban rat population.Carvalho-Pereira T, Pedra GG, de Oliveira DS, Souza FN, Zeppelini CG, Santos LRN, Couto RD, Bahiense TC, da Silva EM, Begon M, Reis MG, Ko AI, Childs JE, Costa F. Sci Rep. 2025 Jul 22; 2025 Jul 22. PMID: 40691241.
• Integrated Analysis of the 2022 SARS-CoV-2 Omicron Lineage Replacement Dynamics in Connecticut, US.Chen NFG, Pham K, Chaguza C, Lopes R, Klaassen F, Kalinich CC, Yale Sars-CoV-Genomic Surveillance Initiative, Kerantzas N, Pandya S, Ferguson D, Schulz W, Weinberger DM, Pitzer VE, Warren JL, Grubaugh ND, Hahn AM. Viruses. 2025 Jul 21; 2025 Jul 21. PMID: 40733636.
• Incorporating Incubation Period Distributions to Precisely Estimate the Association Between Rainfall and Legionella Infection.Cassell K, Warren JL, Heneghan C, Weinberger DM. J Infect Dis. 2025 Jul 11. PMID: 39689015.
• Complete genome sequence of a novel Acinetobacter spp. linked to an outbreak of sepsis following apheresis platelet transfusion.Kent AG, Sula E, Breaker E, McAllister GA, Gable P, Chan-Riley MY, Leung VH, Peaper DR, Jones SA, Jones JM, Basavaraju S, Halpin AL. Microbiol Resour Announc. 2025 Jul 10; 2025 Jun 12. PMID: 40503797.
• High-affinity CD16A polymorphism associated with reduced risk ofsevere COVID-19.Qualls AE, Tsao T, Lui I, Lim SA, Su Y, Chen E, Duchen D, Maecker HT, Kim-Schulze S, Montgomery RR, Krammer F, Langelier CR, Levy O, Baden LR, Melamed E, Ehrlich LI, McComsey GA, Sekaly RP, Cairns CB, Haddad EK, Shaw AC, Hafler DA, Corry DB, Kheradmand F, Atkinson MA, Brakenridge SC, Higuita NIA, Metcalf JP, Hough CL, Messer WB, Pulendran B, Nadeau KC, Davis MM, Fernandez-Sesma A, Simon V, Kraft M, Bime C, Calfee CS, Erle DJ, Schaenmann J, Ozonoff A, Peters B, Kleinstein SH, Augustine AD, Diray-Arce J, Becker PM, Rouphael N, Goldman JD, Calabrese DR, Heath JR, Wells JA, Reed EF, Lanier LL, Pickering H, Aguilar OA. JCI Insight. 2025 Jul 8; 2025 May 22. PMID: 40402577.
• Baseline predictors for 28-day COVID-19 severity and mortality among hospitalized patients: results from the IMPACC study.Hou J, Haslund-Gourley B, Diray-Arce J, Hoch A, Rouphael N, Becker PM, Augustine AD, Ozonoff A, Guan L, Kleinstein SH, Peters B, Reed E, Altman M, Langelier CR, Maecker H, Kim S, Montgomery RR, Krammer F, Wilson M, Eckalbar W, Bosinger SE, Levy O, Steen H, Rosen LB, Baden LR, Melamed E, Ehrlich LIR, McComsey GA, Sekaly RP, Schaenman J, Shaw AC, Hafler DA, Corry DB, Kheradmand F, Atkinson MA, Brakenridge SC, Agudelo Higuita NI, Metcalf JP, Hough CL, Messer WB, Pulendran B, Nadeau KC, Davis MM, Fernandez Sesma A, Simon V, Kraft M, Bime C, Calfee CS, Erle DJ, Impacc Network, Robinson LF, Cairns CB, Haddad EK, Comunale MA. Front Med (Lausanne). 2025; 2025 Jul 4. PMID: 40687705.
• How COVID-19 Treatment in Pregnancy Reflects Healthcare Utilization During a Pandemic: A Two-Stage Individual Participant Data Meta-Analysis Combining Case-Based Registries.Maisonneuve E, De Bruin O, Favre G, Oakley E, Kim JYH, Farooq F, Al-Fadel N, Almutairi A, Del Mar Gil M, Fernandez Buhigas I, Visentin S, Cosmi E, Surita F, Souza RT, Cecatti JG, Costa ML, Sanin-Blair J, Tolosa JE, Hadar E, Goncé A, Poncelet C, Forestier F, Quibel T, Martinez de Tejada B, Eggel-Hort B, Capoccia Brugger R, Surbek D, Raio L, Radan AP, Todesco-Bernasconi M, Monod C, Schäffer L, Harnadi A, Mousavi SH, Ayres-de-Campos D, Pomar L, Sichitiu J, Salomon LJ, Ville Y, Papadia A, Rossier MC, Schuler-Faccini L, Goncalves Pereira N, Etchegaray A, Nieto-Calvache AJ, Geary M, Fuenzalida J, Grawe C, Ko AI, Johann S, De Santis M, Voekt CA, Hcini N, Nielsen-Saines K, Garabedian C, Sentilhes L, May Feuerschuette OH, Vetter G, Wardhana MP, Dajti I, Bloemenkamp KWM, Siiskonen SJ, Smith ER, Baud D, Panchaud A, Sturkenboom MCJM. Pharmacoepidemiol Drug Saf. 2025 Jul. PMID: 40665803.
• Factors associated with persistent blood stream infection in the Neonatal Intensive Care Unit.Lee H, Fleiss N, Bizzarro M, Feinn R, Rychalsky M, Puthawala C, Peaper DR, Murray TS. Res Sq. 2025 Jul 1; 2025 Jul 1. PMID: 40630520.
• Nasal biomarker testing to rule out viral respiratory infection and triage samples: a test performance study.Amat JAR, Dudgeon SN, Cheemarla NR, Watkins TA, Green AB, Young HP, Peaper DR, Landry ML, Schulz WL, Foxman EF. EBioMedicine. 2025 Jul; 2025 Jun 20. PMID: 40543450.
• Cerebrospinal fluid immune phenotyping reveals distinct immunotypes of myalgic encephalomyelitis/chronic fatigue syndrome.Bastos VC, Greene KA, Tabachnikova A, Bhattacharjee B, Sjögren P, Bertilson B, Reifert J, Zhang M, Kamath K, Shon J, Gehlhausen JR, Guan L, VanElzakker M, Proal A, Bragée B, Iwasaki A. J Immunol. 2025 Jul 1. PMID: 40373264.
• Zika virus: advancing a priority research agenda for preparedness and response.Lackritz EM, Ng LC, Marques ETA, Rabe IB, Bourne N, Staples JE, Méndez-Rico JA, Harris E, Brault AC, Ko AI, Beasley DWC, Leighton T, Wilder-Smith A, Ostrowsky JT, Mehr AJ, Ulrich AK, Velayudhan R, Golding JP, Fay PC, Cehovin A, Moua NM, Moore KA, Osterholm MT, Barrett ADT. Lancet Infect Dis. 2025 Jul; 2025 Feb 27. PMID: 40024263.
• Gender differences in Leptospira exposure risk, perceptions of disease severity, and high-risk behaviours in Salvador, Brazil: A cross-sectional study.Delight EA, Santiago DCC, Palma FAG, de Oliveira D, Souza FN, Santana JO, Hidano A, López YA, Reis MG, Ko AI, Marphatia AA, Cremonese C, Costa F, Eyre MT. PLOS Glob Public Health. 2025; 2025 Jun 27. PMID: 40577380.
• Temporal changes in pneumococcal carriage among childcare-attending children during the COVID-19 pandemic in the Greater New Haven Area, USA.Peno C, Thindwa D, Hislop MS, Yolda-Carr D, Egbewole D, Viswanathan G, Lin TY, Mbodj S, Rayack E, Askari HM, Kazemi Y, Lapidus S, Spatz ES, Zirinsky E, Oliveira CR, Bei AK, Weinberger DM, Wyllie AL. Res Sq. 2025 Jun 23; 2025 Jun 23. PMID: 40678241.
• Utilizing virus genomic surveillance to predict vaccine effectiveness.Kwon J, Li K, Warren JL, Pandya S, Hahn AM, Pitzer VE, Weinberger DM, Grubaugh ND. medRxiv. 2025 Jun 22; 2025 Jun 22. PMID: 40585094.
• Systemic in utero gene editing as a treatment for cystic fibrosis.Ricciardi AS, Barone C, Putman R, Quijano E, Gupta A, Nguyen R, Mandl H, Piotrowski-Daspit AS, Lopez-Giraldez F, Luks V, Freedman-Weiss MR, Farrelly J, Ahle S, Lynn AY, Glazer PM, Saltzman WM, Stitelman DH, Egan ME. Proc Natl Acad Sci U S A. 2025 Jun 17; 2025 Jun 10. PMID: 40493185.