Lizardi PM, Yan Q, Wajapeyee N: High-Throughput Deep Sequencing for Mapping Mammalian DNA Methylation. Cold Spring Harb Protoc. 2017 Dec 1; 2017 Dec 1. PMID: 27852842

Lizardi PM, Yan Q, Wajapeyee N: Methyl-Cytosine-Based Immunoprecipitation for DNA Methylation Analysis. Cold Spring Harb Protoc. 2017 Dec 1; 2017 Dec 1. PMID: 27852840

Lizardi PM, Yan Q, Wajapeyee N: Analysis of DNA Methylation in Mammalian Cells. Cold Spring Harb Protoc. 2017 Dec 1; 2017 Dec 1. PMID: 27852839

Lizardi PM, Yan Q, Wajapeyee N: Methylation-Specific Polymerase Chain Reaction (PCR) for Gene-Specific DNA Methylation Detection. Cold Spring Harb Protoc. 2017 Dec 1; 2017 Dec 1. PMID: 27852838

Lizardi PM, Yan Q, Wajapeyee N: DNA Bisulfite Sequencing for Single-Nucleotide-Resolution DNA Methylation Detection. Cold Spring Harb Protoc. 2017 Nov 1; 2017 Nov 1. PMID: 27852843

Lizardi PM, Yan Q, Wajapeyee N: Illumina Sequencing of Bisulfite-Converted DNA Libraries. Cold Spring Harb Protoc. 2017 Nov 1; 2017 Nov 1. PMID: 27852841

Zheng C, Wang Y, Yang L, Zhou S, Gao Y, Li F, Feng Y, Wang Z, Zhan L, Yan Q, Zhu X, Wong KK, Chen Z, Ji H: Cell Division Cycle 42 plays a Cell type-Specific role in Lung Tumorigenesis. Sci Rep. 2017 Sep 4; 2017 Sep 4. PMID: 28871124

Jiang Y, Mao C, Yang R, Yan B, Shi Y, Liu X, Lai W, Liu Y, Wang X, Xiao D, Zhou H, Cheng Y, Yu F, Cao Y, Liu S, Yan Q, Tao Y: EGLN1/c-Myc Induced Lymphoid-Specific Helicase Inhibits Ferroptosis through Lipid Metabolic Gene Expression Changes. Theranostics. 2017; 2017 Jul 23. PMID: 28900510

Brier AB, Loft A, Madsen JGS, Rosengren T, Nielsen R, Schmidt SF, Liu Z, Yan Q, Gronemeyer H, Mandrup S: The KDM5 family is required for activation of pro-proliferative cell cycle genes during adipocyte differentiation. Nucleic Acids Res. 2017 Feb 28. PMID: 27899593

Blair LP, Liu Z, Labitigan RL, Wu L, Zheng D, Xia Z, Pearson EL, Nazeer FI, Cao J, Lang SM, Rines RJ, Mackintosh SG, Moore CL, Li W, Tian B, Tackett AJ, Yan Q: KDM5 lysine demethylases are involved in maintenance of 3'UTR length. Sci Adv. 2016 Nov; 2016 Nov 18. PMID: 28138513

Cao J, Wu L, Zhang SM, Lu M, Cheung WK, Cai W, Gale M, Xu Q, Yan Q: An easy and efficient inducible CRISPR/Cas9 platform with improved specificity for multiple gene targeting. Nucleic Acids Res. 2016 Nov 2; 2016 Jul 25. PMID: 27458201

Horton JR, Liu X, Gale M, Wu L, Shanks JR, Zhang X, Webber PJ, Bell JS, Kales SC, Mott BT, Rai G, Jansen DJ, Henderson MJ, Urban DJ, Hall MD, Simeonov A, Maloney DJ, Johns MA, Fu H, Jadhav A, Vertino PM, Yan Q, Cheng X: Structural Basis for KDM5A Histone Lysine Demethylase Inhibition by Diverse Compounds. Cell Chem Biol. 2016 Jul 21; 2016 Jul 14. PMID: 27427228

Gale M, Sayegh J, Cao J, Norcia M, Gareiss P, Hoyer D, Merkel JS, Yan Q: Screen-identified selective inhibitor of lysine demethylase 5A blocks cancer cell growth and drug resistance. Oncotarget. 2016 Jun 28. PMID: 27224921

Colavito SA, Zou MR, Yan Q, Nguyen DX, Stern DF: Significance of glioma-associated oncogene homolog 1 (GLI1) expression in claudin-low breast cancer and crosstalk with the nuclear factor kappa-light-chain-enhancer of activated B cells (NFκB) pathway. Breast Cancer Res. 2014 Sep 25; 2014 Sep 25. PMID: 25252859

Zou MR, Cao J, Liu Z, Huh SJ, Polyak K, Yan Q: Histone demethylase jumonji AT-rich interactive domain 1B (JARID1B) controls mammary gland development by regulating key developmental and lineage specification genes. J Biol Chem. 2014 Jun 20; 2014 May 6. PMID: 24802759

Cao J, Liu Z, Cheung WK, Zhao M, Chen SY, Chan SW, Booth CJ, Nguyen DX, Yan Q: Histone demethylase RBP2 is critical for breast cancer progression and metastasis. Cell Rep. 2014 Mar 13; 2014 Feb 27. PMID: 24582965

Teng YC, Lee CF, Li YS, Chen YR, Hsiao PW, Chan MY, Lin FM, Huang HD, Chen YT, Jeng YM, Hsu CH, Yan Q, Tsai MD, Juan LJ: Histone demethylase RBP2 promotes lung tumorigenesis and cancer metastasis. Cancer Res. 2013 Aug 1; 2013 May 30. PMID: 23722541

Cao J, Yan Q: Histone demethylases set the stage for cancer metastasis. Sci Signal. 2013 Apr 30; 2013 Apr 30. PMID: 23633674

Sayegh J, Cao J, Zou MR, Morales A, Blair LP, Norcia M, Hoyer D, Tackett AJ, Merkel JS, Yan Q: Identification of small molecule inhibitors of Jumonji AT-rich interactive domain 1B (JARID1B) histone demethylase by a sensitive high throughput screen. J Biol Chem. 2013 Mar 29; 2013 Feb 13. PMID: 23408432

Beshiri ML, Holmes KB, Richter WF, Hess S, Islam AB, Yan Q, Plante L, Litovchick L, Gévry N, Lopez-Bigas N, Kaelin WG Jr, Benevolenskaya EV: Coordinated repression of cell cycle genes by KDM5A and E2F4 during differentiation. Proc Natl Acad Sci U S A. 2012 Nov 6; 2012 Oct 23. PMID: 23093672

Blair LP, Yan Q: Epigenetic mechanisms in commonly occurring cancers. DNA Cell Biol. 2012 Oct; 2012 Apr 20. PMID: 22519822

Cao J, Yan Q: Histone ubiquitination and deubiquitination in transcription, DNA damage response, and cancer. Front Oncol. 2012; 2012 Mar 12. PMID: 22649782

Niu X, Zhang T, Liao L, Zhou L, Lindner DJ, Zhou M, Rini B, Yan Q, Yang H: The von Hippel-Lindau tumor suppressor protein regulates gene expression and tumor growth through histone demethylase JARID1C. Oncogene. 2012 Feb 9; 2011 Jul 4. PMID: 21725364

Lin W, Cao J, Liu J, Beshiri ML, Fujiwara Y, Francis J, Cherniack AD, Geisen C, Blair LP, Zou MR, Shen X, Kawamori D, Liu Z, Grisanzio C, Watanabe H, Minamishima YA, Zhang Q, Kulkarni RN, Signoretti S, Rodig SJ, Bronson RT, Orkin SH, Tuck DP, Benevolenskaya EV, Meyerson M, Kaelin WG Jr, Yan Q: Loss of the retinoblastoma binding protein 2 (RBP2) histone demethylase suppresses tumorigenesis in mice lacking Rb1 or Men1. Proc Natl Acad Sci U S A. 2011 Aug 16; 2011 Jul 25. PMID: 21788502

Blair LP, Cao J, Zou MR, Sayegh J, Yan Q: Epigenetic Regulation by Lysine Demethylase 5 (KDM5) Enzymes in Cancer. Cancers (Basel). 2011 Mar 1. PMID: 21544224

Yan Q, Wajapeyee N: Exploiting cellular senescence to treat cancer and circumvent drug resistance. Cancer Biol Ther. 2010 Feb; 2010 Feb 11. PMID: 20118655

van Oevelen C, Wang J, Asp P, Yan Q, Kaelin WG Jr, Kluger Y, Dynlacht BD: A role for mammalian Sin3 in permanent gene silencing. Mol Cell. 2008 Nov 7. PMID: 18995834

Yang H, Minamishima YA, Yan Q, Schlisio S, Ebert BL, Zhang X, Zhang L, Kim WY, Olumi AF, Kaelin WG Jr: pVHL acts as an adaptor to promote the inhibitory phosphorylation of the NF-kappaB agonist Card9 by CK2. Mol Cell. 2007 Oct 12. PMID: 17936701

Li L, Zhang L, Zhang X, Yan Q, Minamishima YA, Olumi AF, Mao M, Bartz S, Kaelin WG Jr: Hypoxia-inducible factor linked to differential kidney cancer risk seen with type 2A and type 2B VHL mutations. Mol Cell Biol. 2007 Aug; 2007 May 25. PMID: 17526729

Klose RJ, Yan Q, Tothova Z, Yamane K, Erdjument-Bromage H, Tempst P, Gilliland DG, Zhang Y, Kaelin WG Jr: The retinoblastoma binding protein RBP2 is an H3K4 demethylase. Cell. 2007 Mar 9; 2007 Feb 22. PMID: 17320163

Yan Q, Bartz S, Mao M, Li L, Kaelin WG Jr: The hypoxia-inducible factor 2alpha N-terminal and C-terminal transactivation domains cooperate to promote renal tumorigenesis in vivo. Mol Cell Biol. 2007 Mar; 2007 Jan 12. PMID: 17220275

Blanchette P, Cheng CY, Yan Q, Ketner G, Ornelles DA, Dobner T, Conaway RC, Conaway JW, Branton PE: Both BC-box motifs of adenovirus protein E4orf6 are required to efficiently assemble an E3 ligase complex that degrades p53. Mol Cell Biol. 2004 Nov. PMID: 15485928

Yan Q, Kamura T, Cai Y, Jin J, Ivan M, Mushegian A, Conaway RC, Conaway JW: Identification of Elongin C and Skp1 sequences that determine Cullin selection. J Biol Chem. 2004 Oct 8; 2004 Jul 27. PMID: 15280393

Querido E, Blanchette P, Yan Q, Kamura T, Morrison M, Boivin D, Kaelin WG, Conaway RC, Conaway JW, Branton PE: Degradation of p53 by adenovirus E4orf6 and E1B55K proteins occurs via a novel mechanism involving a Cullin-containing complex. Genes Dev. 2001 Dec 1. PMID: 11731475

Kamura T, Burian D, Yan Q, Schmidt SL, Lane WS, Querido E, Branton PE, Shilatifard A, Conaway RC, Conaway JW: Muf1, a novel Elongin BC-interacting leucine-rich repeat protein that can assemble with Cul5 and Rbx1 to reconstitute a ubiquitin ligase. J Biol Chem. 2001 Aug 10; 2001 May 30. PMID: 11384984

Elmendorf BJ, Shilatifard A, Yan Q, Conaway JW, Conaway RC: Transcription factors TFIIF, ELL, and Elongin negatively regulate SII-induced nascent transcript cleavage by non-arrested RNA polymerase II elongation intermediates. J Biol Chem. 2001 Jun 22; 2001 Mar 19. PMID: 11259417

Yan Q, Moreland RJ, Conaway JW, Conaway RC: Dual roles for transcription factor IIF in promoter escape by RNA polymerase II. J Biol Chem. 1999 Dec 10. PMID: 10585446

Kamura T, Conrad MN, Yan Q, Conaway RC, Conaway JW: The Rbx1 subunit of SCF and VHL E3 ubiquitin ligase activates Rub1 modification of cullins Cdc53 and Cul2. Genes Dev. 1999 Nov 15. PMID: 10579999

Moreland RJ, Tirode F, Yan Q, Conaway JW, Egly JM, Conaway RC: A role for the TFIIH XPB DNA helicase in promoter escape by RNA polymerase II. J Biol Chem. 1999 Aug 6. PMID: 10428772

Conaway JW, Dvir A, Moreland RJ, Yan Q, Elmendorf BJ, Tan S, Conaway RC: Mechanism of promoter escape by RNA polymerase II. Cold Spring Harb Symp Quant Biol. 1998. PMID: 10384300