Publications

Greenbaum D: Expanding ELSI to all areas of innovative science and technology. Nat Biotechnol. 2015 Apr. PMID: 25850063

Arleo EK, Troiano RN, da Silva R, Greenbaum D, Kliman HJ: Utilizing two-dimensional ultrasound to develop normative curves for estimated placental volume. Am J Perinatol. 2014 Sep; 2013 Oct 9. PMID: 24108663

Greenbaum D: If you don't know where you are going, you might wind up someplace else: incidental findings in recreational personal genomics. Am J Bioeth. 2014 Mar. PMID: 24592830

Greenbaum D, Nakar S: Editorial: genomics and criminal law. Recent Adv DNA Gene Seq. 2014. PMID: 25860437

Greenbaum D: Regulation and the fate of personalized medicine. Virtual Mentor. 2012 Aug 1; 2012 Aug 1. PMID: 23351321

Greenbaum D: Introducing personal genomics to college athletes: potentials and pitfalls. Am J Bioeth. 2012. PMID: 22452478

Greenbaum D: Patents and drug shortages: will the new congressional efforts save us from impending drug shortages? Am J Bioeth. 2012. PMID: 22220953

Greenbaum D, Sboner A, Mu XJ, Gerstein M: Genomics and privacy: implications of the new reality of closed data for the field. PLoS Comput Biol. 2011 Dec; 2011 Dec 1. PMID: 22144881

Greenbaum D: An analysis of federal circuit discrimination: the evolution of the written description requirement vis-a-vis DNA and biotechnological inventions concerns for synthetic biology. Recent Pat DNA Gene Seq. 2011 Dec. PMID: 21787273

Greenbaum D, Gerstein M: The role of cloud computing in managing the deluge of potentially private genetic data. Am J Bioeth. 2011 Nov. PMID: 22047125

Sboner A, Mu XJ, Greenbaum D, Auerbach RK, Gerstein MB: The real cost of sequencing: higher than you think! Genome Biol. 2011 Aug 25; 2011 Aug 25. PMID: 21867570

Greenbaum D: Patentable subject matter: morally neutral and context free. Recent Pat DNA Gene Seq. 2011 Aug. PMID: 21592085

Greenbaum D, Gerstein M: Social considerations in research: consider them but don't use them. Am J Bioeth. 2011 May. PMID: 21534147

Greenbaum D, Du J, Gerstein M: Genomic anonymity: have we already lost it? Am J Bioeth. 2008 Oct. PMID: 19003717

Gerstein M, Greenbaum D, Cheung K, Miller PL: An interdepartmental Ph.D. program in computational biology and bioinformatics: the Yale perspective. J Biomed Inform. 2007 Feb; 2006 Mar 6. PMID: 16650809

Greenbaum D: An analysis of the evolution of the written description requirement vis-à-vis DNA and biotechnological inventions. Recent Pat DNA Gene Seq. 2007. PMID: 19075928

Smith A, Greenbaum D, Douglas SM, Long M, Gerstein M: Network security and data integrity in academia: an assessment and a proposal for large-scale archiving. Genome Biol. 2005; 2005 Aug 30. PMID: 16168090

Greenbaum D, Douglas SM, Smith A, Lim J, Fischer M, Schultz M, Gerstein M: Computer security in academia-a potential roadblock to distributed annotation of the human genome. Nat Biotechnol. 2004 Jun. PMID: 15175700

Yu H, Greenbaum D, Xin Lu H, Zhu X, Gerstein M: Genomic analysis of essentiality within protein networks. Trends Genet. 2004 Jun. PMID: 15145574

Yu H, Zhu X, Greenbaum D, Karro J, Gerstein M: TopNet: a tool for comparing biological sub-networks, correlating protein properties with topological statistics. Nucleic Acids Res. 2004; 2004 Jan 14. PMID: 14724320

Xia Y, Yu H, Jansen R, Seringhaus M, Baxter S, Greenbaum D, Zhao H, Gerstein M: Analyzing cellular biochemistry in terms of molecular networks. Annu Rev Biochem. 2004. PMID: 15189167

Jansen R, Yu H, Greenbaum D, Kluger Y, Krogan NJ, Chung S, Emili A, Snyder M, Greenblatt JF, Gerstein M: A Bayesian networks approach for predicting protein-protein interactions from genomic data. Science. 2003 Oct 17. PMID: 14564010

Greenbaum D, Gerstein M: A universal legal framework as a prerequisite for database interoperability. Nat Biotechnol. 2003 Sep. PMID: 12949555

Greenbaum D, Colangelo C, Williams K, Gerstein M: Comparing protein abundance and mRNA expression levels on a genomic scale. Genome Biol. 2003; 2003 Aug 29. PMID: 12952525

Lian Z, Kluger Y, Greenbaum DS, Tuck D, Gerstein M, Berliner N, Weissman SM, Newburger PE: Genomic and proteomic analysis of the myeloid differentiation program: global analysis of gene expression during induced differentiation in the MPRO cell line. Blood. 2002 Nov 1. PMID: 12384419

Lin J, Qian J, Greenbaum D, Bertone P, Das R, Echols N, Senes A, Stenger B, Gerstein M: GeneCensus: genome comparisons in terms of metabolic pathway activity and protein family sharing. Nucleic Acids Res. 2002 Oct 15. PMID: 12384605

Hegyi H, Lin J, Greenbaum D, Gerstein M: Structural genomics analysis: characteristics of atypical, common, and horizontally transferred folds. Proteins. 2002 May 1. PMID: 11933060

Greenbaum D, Jansen R, Gerstein M: Analysis of mRNA expression and protein abundance data: an approach for the comparison of the enrichment of features in the cellular population of proteins and transcripts. Bioinformatics. 2002 Apr. PMID: 12016056

Jansen R, Greenbaum D, Gerstein M: Relating whole-genome expression data with protein-protein interactions. Genome Res. 2002 Jan. PMID: 11779829

Greenbaum D, Luscombe NM, Jansen R, Qian J, Gerstein M: Interrelating different types of genomic data, from proteome to secretome: 'oming in on function. Genome Res. 2001 Sep. PMID: 11544189

Luscombe NM, Greenbaum D, Gerstein M: What is bioinformatics? A proposed definition and overview of the field. Methods Inf Med. 2001. PMID: 11552348

Das R, Junker J, Greenbaum D, Gerstein MB: Global perspectives on proteins: comparing genomes in terms of folds, pathways and beyond. Pharmacogenomics J. 2001. PMID: 11911438

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