Publications

Greenbaum D: If you can't walk the walk, do you have to talk the talk: ethical considerations for the emerging field of sports genomics. Am J Bioeth. 2013;13 (10) :19-21. PMID: 24024800


Greenbaum D: Genomic data disclosure: time to reassess the realities. Am J Bioeth. 2013;13 (5) :47-50. PMID: 23557049


Greenbaum D: Grand challenge: ELSI in a changing global environment. Front Genet. 2013;4 :158. Epub 2013 Aug 16. PMID: 23990842

Greenbaum D: Regulation and the fate of personalized medicine. Virtual Mentor. 2012 Aug 1;14 (8) :645-52. Epub 2012 Aug 1. PMID: 23351321


Greenbaum D: Introducing personal genomics to college athletes: potentials and pitfalls. Am J Bioeth. 2012;12 (4) :45-7. PMID: 22452478


Greenbaum D: Patents and drug shortages: will the new congressional efforts save us from impending drug shortages? Am J Bioeth. 2012;12 (1) :18-20. PMID: 22220953

Greenbaum D, Sboner A, Mu XJ and Gerstein M: Genomics and privacy: implications of the new reality of closed data for the field. PLoS Comput Biol. 2011 Dec;7 (12) :e1002278. Epub 2011 Dec 1. PMID: 22144881


Greenbaum D: An analysis of federal circuit discrimination: the evolution of the written description requirement vis-a-vis DNA and biotechnological inventions concerns for synthetic biology. Recent Pat DNA Gene Seq. 2011 Dec;5 (3) :153-65. PMID: 21787273


Greenbaum D and Gerstein M: The role of cloud computing in managing the deluge of potentially private genetic data. Am J Bioeth. 2011 Nov;11 (11) :39-41. PMID: 22047125


Sboner A, Mu XJ, Greenbaum D, Auerbach RK and Gerstein MB: The real cost of sequencing: higher than you think! Genome Biol. 2011 Aug 25;12 (8) :125. Epub 2011 Aug 25. PMID: 21867570


Greenbaum D: Patentable subject matter: morally neutral and context free. Recent Pat DNA Gene Seq. 2011 Aug;5 (2) :72-80. PMID: 21592085


Greenbaum D and Gerstein M: Social considerations in research: consider them but don't use them. Am J Bioeth. 2011 May;11 (5) :31-2. PMID: 21534147

Greenbaum D and Gerstein M: Social networking and personal genomics: suggestions for optimizing the interaction. Am J Bioeth. 2009;9 (6-7) :15-9. PMID: 19998104

Greenbaum D, Du J and Gerstein M: Genomic anonymity: have we already lost it? Am J Bioeth. 2008 Oct;8 (10) :71-4. PMID: 19003717

Gerstein M, Greenbaum D, Cheung K and Miller PL: An interdepartmental Ph.D. program in computational biology and bioinformatics: the Yale perspective. J Biomed Inform. 2007 Feb;40 (1) :73-9. Epub 2006 Mar 6. PMID: 16650809


Greenbaum D: An analysis of the evolution of the written description requirement vis-à-vis DNA and biotechnological inventions. Recent Pat DNA Gene Seq. 2007;1 (2) :138-44. PMID: 19075928

Smith A, Greenbaum D, Douglas SM, Long M and Gerstein M: Network security and data integrity in academia: an assessment and a proposal for large-scale archiving. Genome Biol. 2005;6 (9) :119. Epub 2005 Aug 30. PMID: 16168090

Greenbaum D, Douglas SM, Smith A, Lim J, Fischer M, Schultz M and Gerstein M: Computer security in academia-a potential roadblock to distributed annotation of the human genome. Nat Biotechnol. 2004 Jun;22 (6) :771-2. PMID: 15175700


Yu H, Greenbaum D, Xin Lu H, Zhu X and Gerstein M: Genomic analysis of essentiality within protein networks. Trends Genet. 2004 Jun;20 (6) :227-31. PMID: 15145574


Yu H, Zhu X, Greenbaum D, Karro J and Gerstein M: TopNet: a tool for comparing biological sub-networks, correlating protein properties with topological statistics. Nucleic Acids Res. 2004;32 (1) :328-37. Epub 2004 Jan 14. PMID: 14724320


Xia Y, Yu H, Jansen R, Seringhaus M, Baxter S, Greenbaum D, Zhao H and Gerstein M: Analyzing cellular biochemistry in terms of molecular networks. Annu Rev Biochem. 2004;73 :1051-87. PMID: 15189167

Jansen R, Yu H, Greenbaum D, Kluger Y, Krogan NJ, Chung S, Emili A, Snyder M, Greenblatt JF and Gerstein M: A Bayesian networks approach for predicting protein-protein interactions from genomic data. Science. 2003 Oct 17;302 (5644) :449-53. PMID: 14564010


Greenbaum D and Gerstein M: A universal legal framework as a prerequisite for database interoperability. Nat Biotechnol. 2003 Sep;21 (9) :979-82. PMID: 12949555


Greenbaum D, Colangelo C, Williams K and Gerstein M: Comparing protein abundance and mRNA expression levels on a genomic scale. Genome Biol. 2003;4 (9) :117. Epub 2003 Aug 29. PMID: 12952525

Lian Z, Kluger Y, Greenbaum DS, Tuck D, Gerstein M, Berliner N, Weissman SM and Newburger PE: Genomic and proteomic analysis of the myeloid differentiation program: global analysis of gene expression during induced differentiation in the MPRO cell line. Blood. 2002 Nov 1;100 (9) :3209-20. PMID: 12384419


Lin J, Qian J, Greenbaum D, Bertone P, Das R, Echols N, Senes A, Stenger B and Gerstein M: GeneCensus: genome comparisons in terms of metabolic pathway activity and protein family sharing. Nucleic Acids Res. 2002 Oct 15;30 (20) :4574-82. PMID: 12384605


Hegyi H, Lin J, Greenbaum D and Gerstein M: Structural genomics analysis: characteristics of atypical, common, and horizontally transferred folds. Proteins. 2002 May 1;47 (2) :126-41. PMID: 11933060


Greenbaum D, Jansen R and Gerstein M: Analysis of mRNA expression and protein abundance data: an approach for the comparison of the enrichment of features in the cellular population of proteins and transcripts. Bioinformatics. 2002 Apr;18 (4) :585-96. PMID: 12016056


Jansen R, Greenbaum D and Gerstein M: Relating whole-genome expression data with protein-protein interactions. Genome Res. 2002 Jan;12 (1) :37-46. PMID: 11779829

Greenbaum D, Luscombe NM, Jansen R, Qian J and Gerstein M: Interrelating different types of genomic data, from proteome to secretome: 'oming in on function. Genome Res. 2001 Sep;11 (9) :1463-8. PMID: 11544189


Luscombe NM, Greenbaum D and Gerstein M: What is bioinformatics? A proposed definition and overview of the field. Methods Inf Med. 2001;40 (4) :346-58. PMID: 11552348


Das R, Junker J, Greenbaum D and Gerstein MB: Global perspectives on proteins: comparing genomes in terms of folds, pathways and beyond. Pharmacogenomics J. 2001;1 (2) :115-25. PMID: 11911438