2007 Publications

  1. Bayrakli F, Bilguvar K, Mason CE, Diluna ML, Bayri Y, Gungor L, Terzi M, Mane SM, Lifton RP, State MW, Gunel M. (2007) Rapid identification of disease-causing mutations using copy number analysis within linkage intervals. Hum Mutat. 28: 1236-1240.
  2. Carrithers MD, Carrithers LM, Czyzyk J, Henegariu O. (2007) Characterization of a severe parenchymal phenotype of experimental autoimmune encephalomyelitis in (C57BL6xB10.PL)F1 mice. J. Neuroimmunol. 187: 31-43.
  3. Jiao Y, Deng XW. (2007) A genome-wide transcriptional activity survey of rice transposable element-related genes. Genome Biol. 8: R28.
  4. Johung K, Goodwin EC, Dimaio, D. (2007) Human papillomavirus E7 repression initiates a transcriptional cascade driven by the retinoblastoma family in senescing cervical carcinoma cells. J. Virol.  81: 2102-2116.
  5. Khanna-Gupta A, Sun H, Zibello T, Lee HM, Dahl R, Boxer LA, Berliner N. (2007) Growth Factor Independence 1 (Gfi-1) plays a role in mediating Specific Granule Deficiency (SGD) in a patient lacking a functional abnormality in the C/EBPepsilon gene.  Blood. 109: 4181-4190.
  6. Kidd M, Modlin IM, Eick GN, Camp RL, Mane SM. (2007) The role of CCN2/CTGF in the proliferation of Mastomys Enterochromaffin-like cells and gastric carcinoid development.  Am. J. Physiol. Gastrointest. Liver Physiol. 292:G191-200.
  7. Kidd M, Modlin IM, Pfragner R, Eick GN, Champaneria MC, Chan AK, Camp RL, Mane SM. (2007) Small bowel carcinoid (enterochromaffin cell) neoplasia exhibits transforming growth factor- beta1-mediated regulatory abnormalities including up-regulation of C-Myc and MTA1. Cancer. 109: 2420-2431.
  8. Kidd M, Modlin IM, Shapiro MD, Camp RL, Mane SM, Usinger W, Murren JR. (2007) CTGF, intestinal stellate cells and carcinoid fibrogenesis. World J. Gastroenterol.  13: 5208-5216.
  9. Kidd M, Nadler B, Mane S, Eick G, Malfertheiner M, Champaneria M, Pfragner R, Modlin I. (2007) GeneChip, geNorm, and gastrointestinal tumors: novel reference genes for real-time PCR. Physiol. Genomics.  30: 363-370.
  10. Lee J, He K, Stolc V, Lee H, Figueroa P, Gao Y, Tongprasit W, Zhao H, Lee I, Deng XW. (2007) Analysis of transcription factor HY5 genomic binding sites revealed its hierarchical role in light regulation of development. Plant Cell. 19:731-749.
  11. Lee TS, Mane S, Eid T, Zhao H, Lin A, Guan Z, Kim JH, Schweitzer J, King-Stevens D, Weber P, Spencer SS, Spencer DD, de Lanerolle NC. (2007) Gene expression in temporal lobe epilepsy is consistent with increased release of glutamate by astrocytes. Mol. Med. 13:1-13.
  12. Li L, Wang X, Sasidharan R, Stolc V, Deng W, He H, Korbel J, Chen X, Tongprasit W, Ronald P, Chen R, Gerstein M, Wang Deng X. (2007) Global identification and characterization of transcriptionally active regions in the rice genome. PLoS ONE. 2:e294.
  13. Mani A, Radhakrishnan J, Wang H, Mani A, Mani MA, Nelson-Williams C, Carew KS, Mane S, Najmabadi H, Wu D, Lifton RP. (2007) LRP6 mutation in a family with early coronary disease and metabolic risk factors. Science. 315: 1278-1282.
  14. Qin G, Gu H, Ma L, Peng Y, Deng XW, Chen Z, Qu LJ. (2007) Disruption of phytoene desaturase gene results in albino and dwarf phenotypes in Arabidopsis by impairing chlorophyll, carotenoid, and gibberellin biosynthesis. Cell Res. 17: 471-482.
  15. Rizzolo LJ, Chen X, Weitzman M, Sun R, Zhang H. (2007) Analysis of the RPE transcriptome reveals dynamic changes during the development of the outer blood-retinal barrier. Mol. Vis. 13: 1259-1273.
  16. Roberts SJ, Ng BY, Filler RB, Lewis J, Glusac EJ, Hayday AC, Tigelaar RE, Girardi M. (2007) Characterizing tumor-promoting T cells in chemically induced cutaneous carcinogenesis. Proc. Natl. Acad. Sci. U.S.A.  104: 6770-6775.
  17. Stone KL, Bjornson RD, Blasko GG, Bruce C, Carriero NJ, Colangelo CM, Crawford JK, Crawford JM, daSilva NC, Deluca JD, Elliott JI, Elliott MM, Flory PJ, Folta-Stogniew EJ, Gulcicek E,  Lee JY, Lin A, LoPresti MB, Mane SM, McMurray WJ, Tikhonova IR, Westman S, Williams NA, Wu T, Hongyu Z, Williams KR. (2007) Keck Foundation Biotechnology Resource Laboratory, Yale University. Yale J. Biol. Med. 80: 195-211.
  18. Su N, He K, Jiao Y, Chen C, Zhou J, Li L, Bai S, Li X, Deng XW. (2007) Distinct  reorganization of the genome transcription associates with organogenesis of somatic embryo, shoots, and roots in rice. Plant Mol. Biol. 63: 337-349.
  19. Tanis KQ, Duman RS, Newton SS. (2007) CREB Binding and Activity in Brain: Regional Specificity and Induction by Electroconvulsive Seizure. Biol. Psychiatry.  63: 710-720.
  20. Wang Z, Cao G, Wang X, Miao J, Liu X, Chen Z, Qu LJ, Gu H.(2007) Identification and characterization of COI1-dependent transcription factor genes involved in JA-mediated response to wounding in Arabidopsis plants. Plant Cell Rep.  27: 125-135.
  21. Zhou J, Wang X, Jiao Y, Qin Y, Liu X, He K, Chen C, Ma L, Wang J, Xiong L, Zhang Q, Fan L, Deng XW. (2007) Global genome expression analysis of rice in response to drought and high-salinity stresses in shoot, flag leaf, and panicle. Plant Mol. Biol. 63: 591-608.