2006 Publications

  1. Chimge N, Mungunsukh O, Ruddle F, Bayarsaihan D. (2006) Gene expression analysis of TFII-I modulated genes in mouse embryonic fibroblasts. J. Exp. Zool. B Mol. Dev. Evol. 308: 225-235.
  2. Hager J. (2006) Making and using spotted DNA Microarrays in an academic core laboratory. Methods Enzymol. 410: 135-168.
  3. Huang S, Schatz F, Masch R, Rahman M, Buchwalder L, Niven-Fairchild T, Tang C, Abrahams VM, Krikun G, Lockwood CJ. (2006) Regulation of Chemokine Production in Response to Pro-inflammatory Cytokines in First Trimester Decidual Cells. J. Reprod. Immunol. 72: 60-73.
  4. Kidd M, Modlin IM,  Eick GN, Champaneria M. (2006) Isolation, Functional Characterization and Transcriptome of Mastomys Ileal Enterochromaffin Cells.  Am. J. Physiol. Gastrointest. Liver Physiol. 291: G778-791.
  5. Kidd M, Modlin, IM, Mane SM, Camp RL, Eick G, Latich I. (2006) The role of genetic markers, NAP1L1, MAGE-D2 and MTA1, in defining small intestinal carcinoid neoplasia. Ann. Surg. Oncol.  13: 253-262.
  6. Kidd M, Modlin IM, Mane SM, Camp RL, Latic I, Zikusoka MN. (2006) Utility of Molecular Genetic Signatures in the Delineation of Gastric Neoplasia. Cancer. 106: 1480-1488.
  7. Kidd M, Modlin IM, Mane SM, Shapiro MD. (2006) Q RT-PCR Detection of Chromogranin A: A New standard in the identification of neuroendocrine tumor disease. Ann Surg.  243, 273-280.
  8. Kim K, Page GP, Beasley TM, Barnes S, Scheirer KE, Allison DB. (2006) A proposed metric for assessing the measurement quality of individual microarrays. BMC Bioinformatics. 7: 35.
  9. Koklanaris N,  Nwachukwu JC, Huang SJ, Guller S, Karpisheva K, Garabedian M, Lee M. (2006) First-trimester trophoblast cell model gene response to hypoxia. Am. J. Obstet. Gynecol. 194: 687-693.
  10. Lei H, Juan AH, Kim M, Ruddle F. (2006) Identification of a Hoxc8-regulated transcriptional network in mouse embryo fibroblast cells. Proc. Natl. Acad. Sci. U.S.A.  103: 10305-10309.
  11. Lockwood C, Matta P, Krikun G, Koopman LA, Masch R, Toti P, Arcuri F, Huang SJ, Funai EF, Schatz F. (2006) Regulation of monocyte chemoattractant protein-1 expression by tumor necrosis factor alpha and interleukin-1 beta in first trimester decidual cells: implications for preeclampsia. Am. J. Pathol. 168: 445-452 .
  12. Modlin IM, Kidd M, Latich I, Zikusoka MN, Eick GN, Mane SM, Camp RL. (2006)  Genetic differentiation of appendiceal tumor malignancy:  a guide for the perplexed.  Ann. Surg.  244: 52-60.
  13. Modlin IM, Kidd M, Pfragner R, Eick GN, Champaneria MC. (2006)  The functional characterization of normal and neoplastic human enterochromaffin cells.  J. Clin. Enocrinol. Metab. 91:2340-2348.
  14. Nakayama Y, Stabach P, Maher SE, Mahajan MC, Masiar P, Liao C, Zhang X, Ye ZJ, Tuck D, Bothwell AL, Newburger PE, Weissman SM. (2006) A limited number of genes are involved in the differentiation of germinal center B cells. J. Cell Biochem. 99:1308-1325.
  15. Patterson TA, Lobenhofer EK, Fulmer-Smentek SB, Collins P, Chu T-M, Bao W, Fang H, Kawasaki ES, Hager J, Tikhonova IR, Walker SJ, Zhang L, Hurban P, de Longueville F, Fuscoe JC,  Tong W, Shi L, Wolfinger RD. (2006) Performance Comparison of One-Color and Two-Color Platforms Within the Microarray Quality Control (MAQC) Project. Nature Biotechnol. 24: 1140-1150.
  16. Ploski J, Newton S, Duman R. (2006) Electroconvulsive seizure-induced gene expression profile of the hippocampus dentate gyrus granule cell layer. J. Neurochem. 99:1122-1132.
  17. Ramana C, Chintapalli J, Xu L, Alia C, Zhou J, Bruder D, Enelow R. (2006) Lung Epithelial NF-kappaB and Stat1 Signaling in Response to CD8+ T Cell Antigen Recognition.  J. Interferon Cytokine Res.   26: 318-327.
  18. Resnick M, Sabo E, Meitner P, Kim S, Cho Y, Kim H, Tavares R, Moss S. (2006) Global analysis of the human gastric epithelial transcriptome altered by Helicobacter pylori eradication in vivo.  Gut. 55: 1717-1724.
  19. Sarno J, Schatz F, Lockwood CJ, Huang SJ, Taylor HS. (2006) Thrombin and Interleukin-1 Beta regulates HOXA10 Expression in Human Term Decidual Cells: Implications for Preterm Labor. J. Clin. Endocrinol. Metabol. 91:2366-2374.
  20. Shi L, Reid LH, Jones WD, Shippy R, Warrington JA, Baker SC, Collins PJ, de Longueville F, Kawasaki ES, Lee KY, Luo Y, Sun YA, Willey JC, Setterquist RA, Fischer GM, Tong W, Dragan YP, Dix DJ, Frueh FW, Goodsaid FM, Herman D, Jensen RV, Johnson CD, Lobenhofer EK, Puri RK, Schrf U, Thierry-Mieg J, Wang C, Wilson M, Wolber PK, Zhang L, Amur S, Bao W, Barbacioru CC, Lucas AB, Bertholet V, Boysen C, Bromley B, Brown D, Brunner A, Canales R, Cao XM, Cebula TA, Chen JJ, Cheng J, Chu TM, Chudin E, Corson J, Corton JC, Croner LJ, Davies C, Davison TS, Delenstarr G, Deng X, Dorris D, Eklund AC, Fan XH, Fang H, Fulmer-Smentek S, Fuscoe JC, Gallagher K, Ge W, Guo L, Guo X, Hager J, Haje PK, Han J, Han T, Harbottle HC, Harris SC, Hatchwell E, Hauser CA, Hester S, Hong H, Hurban P, Jackson SA, Ji H, Knight CR, Kuo WP, LeClerc JE, Levy S, Li QZ, Liu C, Liu Y, Lombardi MJ, Ma Y, Magnuson SR, Maqsodi B, McDaniel T, Mei N, Myklebost O, Ning B, Novoradovskaya N, Orr MS, Osborn TW, Papallo A, Patterson TA, Perkins RG, Peters EH, Peterson R, Philips KL, Pine PS, Pusztai L, Qian F, Ren H, Rosen M, Rosenzweig BA, Samaha RR, Schena M, Schroth GP, Shchegrova S, Smith DD, Staedtler F, Su Z, Sun H, Szallasi Z, Tezak Z, Thierry-Mieg D, Thompson KL, Tikhonova I, Turpaz Y, Vallanat B, Van C, Walker SJ, Wang SJ, Wang Y, Wolfinger R, Wong A, Wu J, Xiao C, Xie Q, Xu J, Yang W, Zhang L, Zhong S, Zong Y, Slikker W Jr., MAQC Consortium. (2006) The MicroArray Quality Control (MAQC) project shows interplatform reproducibility of gene expression measurements. Nat. Biotechnol. 24:1151-1161.
  21. Stetson DB, Medzhitov R. (2006) Recognition of cytosolic DNA activates an IRF3-dependent innate immune response. Immunity. 24: 93-103.
  22. Wade C, Umbarger M, McAlear MA. (2006) The budding yeast rRNA and ribosome biosynthesis (RRB) regulon contains over 200 genes.  Yeast. 23: 293-306.
  23. Zhang SS, Xu X, Liu MG, Zhao H, Soares MB, Barnstable CJ, Fu XY.(2006) A biphasic pattern of gene expression during mouse retina development. BMC Dev. Biol. 6: 48.