2004 Publications

  1. Amin DN, Perkins AS, Stern DF. (2004) Gene expression profiling of ErbB receptor and ligand-dependent transcription. Oncogene. 23: 1428-1438.
  2. Bais HP, Vepachedu R, Gilroy S, Callaway RM, Vivanco JM. (2003) Allelopathy and exotic plant invasion: from molecules and genes to species interactions. Science. 301: 1377-1380.
  3. Balachandran S, Thomas E, Barber GN. (2004) A FADD-dependent innate immune mechanism in mammalian cells. Nature. 432: 401-405.
  4. Chalasani G, Li Q, Konieczny BT, Smith-Diggs L, Wrobel B, Dai Z, Perkins DL, Baddoura FK, Lakkis FG. (2004) The allograft defines the type of rejection (Acute versus Chronic) in the face of an established effector immune response 1. J. Immunol. 172: 7813–7820.
  5. Chen J, Newton SS, Zeng L, Adams DH, Dow AL, Madsen M, Nestler EJ, Duman RS. (2004) Downregulation of the CCAAT-enhancer binding protein beta in deltaFosB transgenic mice and by electroconvulsive seizures. Neuropsychopharmacology.  29: 23-31.
  6. Cheung KH, de Knikker R, Guo Y, Zhong G, Hager J, Yip KY, Kwan AKH, Li P, Cheung DW. (2004) Biosphere: the interoperation of web services in microarray cluster analysis. Appl. Bioinformatics. 3: 253-256.
  7. Cheung KH, Hager J, Pan D, Srivastava R, Mane S, Li Y, Miller P, Williams K. (2004) KARMA: A web server application for comparing and annotating heterogeneous microarray platforms. Nucleic Acids Res. 32 (Web Server issue):W441-W444.
  8. Cook HL, Mischo HE, Steitz JA. (2004) The Herpesvirus saimiri small nuclear RNAs recruit AU-rich element-binding proteins but do not alter host AU-rich element-containing mRNA levels in virally transformed T cells. Mol. Cell Biol.  24: 4522-4533.
  9. Hoek K, Rimm DL, Williams KR, Zhao H, Ariyan S, Lin A, Kluger HM, Berger AJ, Cheng E, Trombetta ES, Wu T, Niinobe M, Yoshikawa K, Hannigan GE, Halaban R. (2004) Expression profiling reveals novel pathways in the transformation of melanocytes to melanomas. Cancer Res.  64: 5270-5282.
  10. Khil PP, Smirnova NA, Romanienko PJ, Camerini-Otero RD. (2004) The mouse X chromosome is enriched for sex-biased genes not subject to selection by meiotic sex chromosome inactivation. Nat. Genet. 36: 642-646.
  11. Kidd M, Hinoue T, Eick G, Lye KD, Wei Y, Mane SM, Modlin IM. (2004) Global gene expression analysis of ECL cells in the mastomys gastric mucosa identifies alteration in the activator Protein-1 pathway. Physiol. Genomics. 20: 131-142.
  12. Kluger HM, Kluger Y, Gilmore-Hebert M, Chang J, Rodov S, Mironenko O, Kacinski B, Perkins A, Sapi E. (2004) cDNA Microarray Analysis of Invasive and Tumorigenic Phenotypes in a Breast Cancer Model. Lab Invest.84: 320-331.
  13. Kozal M, Chiarella J. (2004) Development of a DNA Microarray to Detect HCV and HIV Drug Resistance. XIII International HIV Drug Resistance Workshop, Tenerife Sur, Canary Islands, Spain June 8-10, 2004 Abstract # 122.
  14. Lee T-S, Eid T, Mane S, Kim JH, Spencer DD, Ottersen OP, de Lanerolle NC. (2004) Aquaporin-4 is increased in the sclerotic hippocampus in human temporal lobe epilepsy. Acta Neuropathol. 108:493-502.
  15. Lee T, Eid T, Mane S, Schweitzer J, Spencer D, de Lanerolle N. (2004) Subcategories of Temporal Lobe Epilepsy are characterized by Distinct Genomic Expression Profiles. Submitted to Neuroscience, 2004.
  16. Marathe R, Guan Z, Anandalakshmi R, Zhao H, Dinesh-Kumar SP. (2004) Study of Arabidopsis thaliana resistome in response to cucumber mosaic virus infection using whole genome microarray Plant Mol. Biol.  55: 501-520.
  17. Rinn JL, Rozowsky JS, Laurenzi IJ, Petersen P, Zon K, Zhong W, Gerstein M, Snyder M. (2004) Major Molecular Differences Between Mammalian Sexes are Involved in Drug Metabolism and Renal Function. Dev. Cell. 6: 791-800.
  18. Tangir J, Bonafe N, Gilmore-Hebert M, Henegariu O, Chambers SK. (2004) SGK1, a potential regulator of c-fms related breast cancer aggressiveness. Clin. Exp. Metastasis. 21: 477-483.
  19. Tian H, Ma M. (2004) Molecular organization of the olfactory septal organ.  J. Neurosci. 24: 8383-8390.
  20. Torpey N, Maher SE, Bothwell AL, Pober JS. (2004) Interferon alpha but not interleukin 12 activates STAT4 signaling in human vascular endothelial cells. J. Biol. Chem. 279: 26789-26796.
  21. Ueland JM, Gwira J, Lui ZX, Cantley LG. (2004) The chemokine KC regulates HGF-stimulated epithelial cell morphogenesis. Am. J. Physiol. Renal Physiol.  286: F581-589.
  22. Wu Y, Zhang X, Bardag-Gorce F, Robel RC, Aguilo J, Chen L, Zeng Y. Hwang K, French SW, Wan YJ. (2004) Retinoid X receptor alpha regulates glutathione homeostasis and xenobiotic detoxification processes in mouse liver. Mol. Pharmacol. 65: 550-557.
  23. Zhang J, Li J, Sterling H, Peng X, Westman S, Lamallem H, Mane S, Vignery A.  An analysis of gene expressed by macrophages during multinucleation. Submitted to J Biological chemistry.
  24. Zhang X, Rogers M, Tian H, Zhang X, Zou DJ, Liu J, Ma M, Shepherd GM, Firestein SJ. (2004) High-throughput microarray detection of olfactory receptor gene expression in the mouse.  Proc. Natl. Acad. Sci. 101: 14168-14173.
  25. Zhou D, Xue J, Gavrialov O, Haddad GG. (2004) Na+/H+ exchanger 1 deficiency alters gene expression in mouse brain. Physiol. Genomics.  18: 331-339.