Keck MS & Proteomics Resource Publications

2010-Present

167. Tellez, L. A., Medina, S., Han, W., Ferreira, J. G., Licona-Limon, P., Ren, X., Lam, T. T., Schwartz, G. J., and de Araujo, I. E. (2013) A gut lipid messenger links excess dietary fat to dopamine deficiency. Science 341, 800-802.

166. Shibata, S., Zhang, J., Puthumana, J., Stone, K. L., and Lifton, R. P. (2013) Kelch-like 3 and Cullin 3 regulate electrolyte homeostasis via ubiquitination and degradation of WNK4. Proc. Natl. Acad. Sci. U. S. A. 110, 7838-7843, (PMCID: PMC 3651502).

165. Robison, A. J., Vialou, V., Mazei-Robison, M., Feng, J., Kourrich, S., Collins, M., Wee, S., Koob, G., Turecki, G., Neve, R., Thomas, M., and Nestler, E. J. (2013) Behavioral and structural responses to chronic cocaine require a feedforward loop involving DeltaFosB and calcium/calmodulin-dependent protein kinase II in the nucleus accumbens shell. J Neurosci 33, 4295-4307, (PMCID: PMC 3658178).

164. McClure-Begley, T. D., Stone, K. L., Marks, M. J., Grady, S. R., Colangelo, C. M., Lindstrom, J. M., and Picciotto, M. R. (2013) Exploring the nicotinic acetylcholine receptor-associated proteome with iTRAQ and transgenic mice. Genomics Proteomics Bioinformatics 11, 207-218, (PMCID: PMC 3806329).

163. Ko, J. H., Wang, Y. S., Nakamura, A., Guo, L. T., Soll, D., and Umehara, T. (2013) Pyrrolysyl-tRNA synthetase variants reveal ancestral aminoacylation function. FEBS Lett 587, 3243-3248, (PMCID: PMC 3778162).

162. Ivanov, A. R., Colangelo, C. M., Dufresne, C. P., Friedman, D. B., Lilley, K. S., Mechtler, K., Phinney, B. S., Rose, K. L., Rudnick, P. A., Searle, B. C., Shaffer, S. A., and Weintraub, S. T. (2013) Interlaboratory studies and initiatives developing standards for proteomics. Proteomics 13, 904-909.

161. Colangelo, C. M., Chung, L., Bruce, C., and Cheung, K. H. (2013) Review of software tools for design and analysis of large scale MRM proteomic datasets. Methods 61, 287-298, (PMCID: PMC 3775261).

160. Bruce, C., Stone, K., Gulcicek, E., and Williams, K. (2013) Proteomics and the analysis of proteomic data: 2013 overview of current protein-profiling technologies. Curr. Protoc. Bioinformatics 41:13.21.1-13.21.17 (PMCID: PMC 3688054).

159. Bansal, N., Zhang, M., Bhaskar, A., Itotia, P., Lee, E., Shlyakhtenko, L. S., Lam, T. T., Fritz, A., Berezney, R., Lyubchenko, Y. L., Stafford, W. F., and Thapar, R. (2013) Assembly of the SLIP1-SLBP complex on histone mRNA requires heterodimerization and sequential binding of SLBP followed by SLIP1. Biochemistry 52, 520-536, (PMCID: PMC 3580866).

158. Antinone, S. E., Ghadge, G. D., Lam, T. T., Wang, L., Roos, R. P., and Green, W. N. (2013) Palmitoylation of superoxide dismutase 1 (SOD1) is increased for familial amyotrophic lateral sclerosis-linked SOD1 mutants. J. Biol. Chem. 288, 21606-21617, (PMCID: PMC 3724620).

157. Zhang, Y. Q., Henderson, M. X., Colangelo, C. M., Ginsberg, S. D., Bruce, C., Wu, T., and Chandra, S. S. (2012) Identification of CSPalpha clients reveals a role in dynamin 1 regulation. Neuron 74, 136-150, (PMCID: PMC 3328141).

156. Zhang, M., Lam, T. T., Tonelli, M., Marzluff, W. F., and Thapar, R. (2012) Interaction of the histone mRNA hairpin with stem-loop binding protein (SLBP) and regulation of the SLBP-RNA complex by phosphorylation and proline isomerization. Biochemistry 51, 3215-3231, (PMCID: PMC 3328597).

155. Sherwin, R., Slayman, C., Rockwell, S., Williams, K., Carson, R., Mane, S., Seow, H., Max, J., and Johnson, T. (2012) Yale Center for Clinical Investigation: Leveraging Industry Partnerships and Research Cores. Clinical and Translational Science 5, 435-436,

154. Shen, H., Song, Y., Colangelo, C. M., Wu, T., Bruce, C., Scabia, G., Galan, A., Maffei, M., and Goldstein, D. R. (2012) Haptoglobin activates innate immunity to enhance acute transplant rejection in mice. J Clin Invest 122, 383-387, (PMCID: PMC 3248290).

153. Sathyanesan, M., Girgenti, M. J., Banasr, M., Stone, K., Bruce, C., Guilchicek, E., Wilczak-Havill, K., Nairn, A., Williams, K., Sass, S., Duman, J. G., and Newton, S. S. (2012) A molecular characterization of the choroid plexus and stress-induced gene regulation. Transl Psychiatry 2, e139, (PMCID: PMC 3410626).

152. Marin, E. P., Derakhshan, B., Lam, T. T., Davalos, A., and Sessa, W. C. (2012) Endothelial cell palmitoylproteomic identifies novel lipid-modified targets and potential substrates for protein acyl transferases. Circ Res 110, 1336-1344, (PMCID: PMC 3428238).

151. Krishnan, N., Lam, T. T., Fritz, A., Rempinski, D., O'Loughlin, K., Minderman, H., Berezney, R., Marzluff, W. F., and Thapar, R. (2012) The prolyl isomerase Pin1 targets stem-loop binding protein (SLBP) to dissociate the SLBP-histone mRNA complex linking histone mRNA decay with SLBP ubiquitination. Mol Cell Biol 32, 4306-4322, (PMCID: PMC 3486140).

150. Ye, Z. J., Gulcicek, E., Stone, K., Lam, T., Schulz, V., and Weissman, S. M. (2011) Complex interactions in EML cell stimulation by stem cell factor and IL-3. Proc. Natl. Acad. Sci. U. S. A. 108, 4882-4887, (PMCID: PMC 3064389).

149. Shabman, RS.; D W. Leung, J Johnson, N Glennon, EE Gulcicek, KL Stone; L Leung, L Hensley, G K. Amarasinghe, Christopher F. Basler (2011) DRBP76 associates with ebolavirus VP35 and suppresses viral polymerase function. J. Infect. Dis. 204, S911-S918; (PMID: 2198776).

148. Shabman, R. S., Gulcicek, E. E., Stone, K. L., and Basler, C. F. (2011) The Ebola virus VP24 protein prevents hnRNP C1/C2 binding to karyopherin alpha1 and partially alters its nuclear import. J Infect Dis 204 Suppl 3, S904-910, (PMCID: PMC 3189985).

147. Rinehart, J., Vazquez, N., Kahle, K. T., Hodson, C. A., Ring, A. M., Gulcicek, E. E., Louvi, A., Bobadilla, N. A., Gamba, G., and Lifton, R. P. (2011) WNK2 kinase is a novel regulator of essential neuronal cation-chloride cotransporters. J. Biol. Chem. 286, 30171-30180, (PMCID: PMC 3191056).

146. Pirruccello, M., Swan, L. E., Folta-Stogniew, E., and De Camilli, P. (2011) Recognition of the F&H motif by the Lowe syndrome protein OCRL. Nat Struct Mol Biol 18, 789-795, (PMCID: PMC 3130824).

145. Noga, E. J., Stone, K. L., Wood, A., Gordon, W. L., and Robinette, D. (2011) Primary structure and cellular localization of callinectin, an antimicrobial peptide from the blue crab. Dev Comp Immunol 35, 409-415, (PMCID: PMC 3046215).

144. Kiraly, D. D., Stone, K. L., Colangelo, C. M., Abbott, T., Wang, Y., Mains, R. E., and Eipper, B. A. (2011) Identification of kalirin-7 as a potential post-synaptic density signaling hub. J Proteome Res 10, 2828-2841, (PMCID: PMC 3107868).

143. Bordner, K. A., George, E. D., Carlyle, B. C., Duque, A., Kitchen, R. R., Lam, T. T., Colangelo, C. M., Stone, K. L., Abbott, T. B., Mane, S. M., Nairn, A. C., and Simen, A. A. (2011) Functional genomic and proteomic analysis reveals disruption of myelin-related genes and translation in a mouse model of early life neglect. Front Psychiatry 2, 18, (PMCID: PMC 3098717).

142. Bianchetta, M. J., Lam, T. T., Jones, S. N., and Morabito, M. A. (2011) Cyclin-dependent kinase 5 regulates PSD-95 ubiquitination in neurons. J Neurosci 31, 12029-12035, (PMCID: PMC 3190401).

141. Seo, J. K., Stephenson, J., Crawford, M., Stone, K. L., and Noga, E. J. (2010) American oyster, Crassostrea virginica, expresses a potent antibacterial histone H2B protein. Mar Biotechnol (NY) 12, 543-551.

140. Rajagopal, C., Stone, K. L., Mains, R. E., and Eipper, B. A. (2010) Secretion stimulates intramembrane proteolysis of a secretory granule membrane enzyme. J. Biol. Chem. 285, 34632-34642, (PMCID: PMC 2966079).

139.   Du, J., Roberts, D., Lin, K., Belcourt, M., King, I., and Lam, T.K. (2010) Case Study: Identification of in vitro metabolite/decomposition products of the novel DNA alkylating agent laromustine, in Biotransformation and Metabolite Elucidation of Xenobiotics: Characterization and Identification (Nassar, A. ed) Chapter 6.

138. Nassar, A.F., Du, J., Roberts, D., Lin, K., Belcourt, M., King, I., and Lam, T.K. (2010) Case Study:  The unanticipated loss of N2 from novel DNA alkylating agent laromustine by collision-induced dissociation: Novel Rearrangements, in Biotransformation and Metabolite Elucidation of Xenobiotics: Characterization and Identification (Nassar, A. ed.), Chapter 5.

137. Fogel, A. I., Li, Y., Giza, J., Wang, Q., Lam, T. T., Modis, Y., and Biederer, T. (2010) N-glycosylation at the SynCAM (synaptic cell adhesion molecule) immunoglobulin interface modulates synaptic adhesion. J. Biol. Chem. 285, 34864-34874, (PMCID: PMC 2966101).

136. Ercan-Sencicek, A. G., Stillman, A. A., Ghosh, A. K., Bilguvar, K., O'Roak, B. J., Mason, C. E., Abbott, T., Gupta, A., King, R. A., Pauls, D. L., Tischfield, J. A., Heiman, G. A., Singer, H. S., Gilbert, D. L., Hoekstra, P. J., Morgan, T. M., Loring, E., Yasuno, K., Fernandez, T., Sanders, S., Louvi, A., Cho, J. H., Mane, S., Colangelo, C. M., Biederer, T., Lifton, R. P., Gunel, M., and State, M. W. (2010) L-histidine decarboxylase and Tourette's syndrome. N Engl J Med 362, 1901-1908, (PMCID: PMC 2894694).

135. Davalos, A., Fernandez-Hernando, C., Sowa, G., Derakhshan, B., Lin, M. I., Lee, J. Y., Zhao, H., Luo, R., Colangelo, C., and Sessa, W. C. (2010) Quantitative proteomics of caveolin-1-regulated proteins: characterization of polymerase i and transcript release factor/CAVIN-1 IN endothelial cells. Mol. Cell. Proteomics 9, 2109-2124, (PMCID: PMC 2953909).

134. Alexander, J. K., Govind, A. P., Drisdel, R. C., Blanton, M. P., Vallejo, Y., Lam, T. T., and Green, W. N. (2010) Palmitoylation of nicotinic acetylcholine receptors. J Mol Neurosci 40, 12-20, (PMCID: PMC 3523180).