- Neuroscience Information Framework - is an initiative of the NIH Blueprint for Neuroscience Research. It provides a dynamic inventory of Web-based neuroscience resources including data, materials, and tools. As part of our collaboration with NIF, we have registered the YPED repository in the NIF registry. In addition, we have transferred the data from the YPED repository to the NIF Data Federation.
- Neuroscience Information Framework Registry
- Neuroscience Information Framework Data Federation
FAQ About Mass Spectrometry
- National Institute of Standards and Technology Libraries of Peptide Tandem Mass Spectra - The National Institutes for Standards and Technologies (NIST) Mass Spectrometry Data Center (a part of the Biomolecular Measurement Division) develops software, databases and peptide libraries for the identification and analysis of chemical compounds by mass spectrometry. As part of our collaboration with NIST, we have provided an initial set of rat brain data (stored in YPED) to NIST for incorporation into the NIST Libraries of Peptide Tandem Mass Spectra.
- An R package providing exploratory graphics and quality assessment for MRM and SWATH data
- Class Prediction Software for Protein Mass Spectrometry Data
- Motips: A Motif Analysis Pipeline Predicting the Binding Targets of Protein Domains, such as the SH3 and Kinase Phosphorylation Domains
- PARE: Protein Abundance and mRNA Expression Correlation Tool
Yale Proteomic Web Sites
Other NIDA Neuroproteomics Centers
- Phospho.ELM: a database of S/T/Y phosphorylation sites
- PHOSIDA: Posttranslational Modification Database