Historical Listing by Year of Patent Applications, Publications, and Poster Abstracts from the Yale/NIDA Neuroproteomics Research Center

Patent Applications:

1.  Pevsner, Paul H., Naftolin, F., Fadiel, A. and Gulcicek, E. (2007) Methods for Preparation of Live Body Tissues for Examination (USPTO patent filed,Pub No. US 2007/0110666).

Publications:

2013

127. McClure-Begley T.D., Papke R.L., Stone K.A., Stokes, C., Levy A.D., Gelernter J., Xie P., Lindstrom J.M., Picciotto M.R. (2014) Rare human nicotinic acetylcholine receptor alpha 4 subunit (CHRNA4) variants affect expression and function of high affinity nicotinic acetylcholine receptors. J. Pharmacol. Exp. There., in press. (PMID: 24385388)

126.Wu, X., Chi, R.J., Baskin, J.M., Lucast, L., Burd, C.G., De Camilli, P., and Reinisch, K.M. (2014) Structural insights into assembly and regulation of the plasma membrane phosphatidylinositol 4-kinase complex. Dev. Cell. 28: 1-11. (PMID: 24360784).

125. Zhang, Y., Tang, W., Zhang, H., Niu, X., Xu, Y., Zhang, J., Gao, K., Pan, W., Boggon, T.J., Toomre, D., Min, W., and Wu, D. (2013) A Network of Interactions Enables CCM3 and STK24 to Coordinate UNC13D-Driven Vesicle Exocytosis in Neutrophils. Dev Cell 27: 215-26. (PMCID: PMC3834565, available on 10/28/14). (PMID: 24176643)

124. Wu, M., Wu, Xudong., and De Camilli, P. (2013) Calcium oscillations-coupled conversion of actin travelling waves to standing oscillations. Proc. Natl. Acad. Sci. USA. 4: 1339-1344. (PMCID: PMC3557052) (PMID: 23297209)

123. Wiseman, S.L., Shimizu, Y., Palfrey, H.C. and Nairn, A.C. (2013) Eukaryotic elongation factor-2 kinase (EF2K) is degraded by the proteasome in response to stimulation via the SCFβTRCP ubiquitin E3 ligase. J. Biol. Chem. 288: 17803-17811. (PMCID: PMC3682579) (PMID: 23640883).

122. Westphal, C. and Chandra, S.S. (2013). Monomeric synucleins generate membrane curvature. J. Biol. Chem. 288: 1829-1840. (PMCID: PMC3548493) (PMID: 23184946).

121. Shibata, S., Zhang, J., Puthumana, J., Stone, K.L., and Lifton, R.P. (2013) Kelch-like 3 and Cullin 3 regulate electrolyte homeostasis via ubiquitination and degradation of WNK4. Proc. Natl. Acad. Sci. U.S.A. 110: 7838-7843.  (PMCID: PMC3651502) (PMID: 23576762)

120. Shibata, S., Rinehart, J., Zhang, J., Moeckel, G., Castañeda-Bueno, M., Stiegler, A.L., Boggon, T.J., Gamba, G., Lifton, R.P. (2013) Mineralocorticoid receptor phosphorylation regulates ligand binding and renal response to volume depletion and hyperkalemia. Cell Metabolism 18(5): 660-671 (PMID: 24206662).

119. Robison, A.J., Vialou, V., Mazei-Robison, M., Feng, J. Kourrich, S., Collins, M., Wee, S-M., Koob, G., Turecki, G., Neve, R., Thomas, M., Nestler, E. (2013) Behavioral and Structural Responses to Chronic Cocaine Require a Feedforward Loop Involving ΔFosB and Calcium/Calmodulin-Dependent Protein Kinase II in the Nucleus Accumbens Shell. J. Neurosci., 33: 4295-4307.  (PMCID:  PMC3658178) (PMID: 23467346).

118. Plattner, F., Hernandéz, A., Kistler, T. M., Pozo, K., Zhong, P., Yuen, E., Hawasli, A., Cooke, S., Tan, C., Guo, A., Weiderhold, T., Yan, Z., Bibb, J.A. (2013) Memory enhancement by targeting Cdk5 regulation of NR2B, Neuron, in press

117. Park, R., Shen, H., Liu, L., Liu, X., Ferguson, S.M., and De Camilli, P. (2013) Dynamin triple knockout cells reveal off target effects of a commonly used dynamin inhibitor. J. Cell Sci. 126: 5305-5312. (PMCID:PMC3828596, Available on 11/15/2014). (PMID: 24046449)

116. McClure-Begley, T., Stone, K.L., Marks, M.J., Grady, S.R., Colangelo, C.M., Lindstrom, J.M., and Picciotto, M.R. (2013) Exploring the nicotinic acetylcholine receptor-associated proteome with iTRAQ and transgenic mice, Genomics, Proteomics & Bioinformatics, 11(4), 207-18.

115. Kim, I., Pan, W., Jones, S.A., Zhang, Y., Zhuang, X., and Wu, D. (2013). Clathrin and AP2 are required for PtdIns(4,5)P2-mediated formation of LRP6 signalosomes. J. Cell Biol. 200: 419-428. (PMCID: PMC3575536) (PMID: 23400998).

114. Ivanov, A.R., Colangelo, C.M., Dufresne, C.P., Friedman, D.B., Lilley, K.S., Mechtler, K., Phinney, B.S., Rose, K.L., Rudnick, P.A., Searle, B.C., Shaffer, S.A., Weintraub, S.T. (2013) Interlaboratory studies and initiatives developing standards for proteomics. Proteomics 13(6):904-909. (PMID: 23319436).

113. Idevall-Hagren O and De Camilli P. (2013) Manipulation of plasma membrane phosphoinositides using photoinduced protein-protein interactions. Methods Mol. Biol. in press..

112. Giordano, F., Saheki, Y., Idevall-Hagren, O., Colombo, S.F., Pirruccello, M., Milosevic, I., Gracheva, E.O., Bagriantsev, S.N., Borgese, N., De Camilli, P. (2013) PI(4,5)P2-Dependent and Ca(2+)-Regulated ER-PM Interactions Mediated by the Extended Synaptotagmins. Cell. 153: 1494-1509. (PMID: 23791178).

111. Devereaux, K., Dall’Armi, C., Alcazar-Roman, A., Ogasawara, Y., Zhou, X., Wang, F., Yamamoto, A., De Camilli, P., and Di Paolo, G. (2013) Regulation of mammalian autophagy by Class II and III Pi 3-kinases through PI3P synthesis. PLOS ONE. 8:e76405. (PMCID: PMC3789715) (PMID:24098492).

110. Destaing, O., Ferguson, S.M., Grichine, A., Oddou, C., De Camilli, P., Albiges-Rizo, C., and Baron, R. (2013) Essential function of dynamin in the invasive properties and actin architecture of v-SRC induced podosomes/invadosomes. PLOS ONE. 10: e77956. (PMCID: PMC3857171) (PMID: 24348990).

109. Craft, G.E., Chen, A., Nairn, A.C. (2013) Recent Advances in Quantitative Neuroproteomics. Methods (Elsevier) issue on Quantitative Proteomics, pii: S1046-2023(13)00112-6. doi: 10.1016/j.ymeth.2013.04.008. (PMID: 23623823).

108. Colangelo CM, Chung L, Bruce C, Chung KH (2013) Review of Software Tools for Design and Analysis of Large scale MRM Proteomic Datasets in Methods (Elsevier) issue on Quantitative Proteomics, pii: S1046-2023(13)00145-X. doi: 10.1016/j.ymeth.2013.05.004. (PMID: 23702368).

107. Bruce, C., Stone, K., Gulcicek, E., and Williams, K. (2013) Proteomics and the Analysis of Proteomic Data: 2013 Overview of Current Protein-Profiling Technologies. Current Protocols Bioinformatics 41:13.21.1-13.21.17., (PMID: 23504934).

106. Armbruster M, Messa M, Ferguson SM, De Camilli P, and Ryan TA. (2013) Dynamin phosphorylation controls optimization of endocytosis for brief action potential bursts. eLife, e00845. (PMCID: PMC3728620) (PMID: 23908769).

105. Antinone, S.E., Ghadge, G.D., Lam, T., Roos, R., and Green, W.N. (2013) Human Superoxide Dismutase (SOD1) is palmitoylated and familial ALS-linked SOD1 mutants are abnormally palmitoylated. J. Biol. Chem., in press. (PMID: 23760509).

2012

104. Zhang,Y., Henderson, M.X., Colangelo, C.M., Ginsberg, S., Bruce, C., Wu, T., and Chandra, S.S. (2012) Identification of CSPα clients reveals a role in dynamin 1 regulation. Neuron 74(1):136-50. (PMCID: PMC3328141) (PMID: 22500636) (YPED Repository).

103. Wu, M., and De Camilli, P. (2012) Supported native plasma membranes as platforms for reconstitution and visualization of endocytic membrane budding. in Lipids, Methods in Cell Biology (Wenk, M.R., Di Paolo, G., eds) Academic Press, volume 108:3-18. (PMCID pending) (PMID: 22325595) .

102. Sousa, L., Lax, I., Shen, H., Ferguson, S.M., De Camilli, P., and Schlessinger, J. (2012) Suppression of EGFR endocytosis by dynamin depletion reveals that EGFR signaling occurs primarily at the plasma membrane. Proc. Nat. Acad. Sci. 109:4419-2 (PMCID: PMC3311323) (PMID: 22371560) .

101. Shen H, Pirruccello M and De Camilli P. (2012) SnapShot: Membrane Curvature Sensors and Generators. Cell. 150: 1300-1300.e2 doi.1016/j.cell.2012.08.017. (PMID: 22980986).

100. Sathyanesan, M., Girgenti, M.J., Banasr, M., Stone, K., Bruce, C., Guilchicek, E., Wilczak-Havill, K., Nairn, A., Williams, K., Sass, S., Duman, J.G., Newton, S.S. (2012) A molecular characterization of the choroid plexus and stress-induced gene regulation. Transl Psychiatry 2(7): e139. (PMCID: PMC3410626) (PMID: 22781172) (YPED Repository).

99. Saheki, Y., and De Camilli, P. (2012) Synaptic vesicle endocytosis in The Synapse. (M. Sheng, B. Sabatini, and T.C. Südhof eds) Cold Spring Harb. Perspect. Biol. 4:  a005645. doi: 10.1101/cshperspect.a005645. (PMID: 22763746).

98.  Rodriguez L, Simeonato E, Scimeni P, Anselmi F, Cali B, Crispino G, Ciubotaru CB, Bortolozzi M, Ramiro FG, Majumder P, Arslan E, De Camilli P, Pozzan T, and Mammano F. (2012). Reduced phosphatidylinositol 4,5-bisphosphate synthesis impairs inner ear Ca2+ signaling and high frequency hearing acquisition. Proc. Natl. Acad. Sci. 109: 14013-14018. (PMCID: PMC3435166) (PMID: 22891314).

97. Pirruccello, M., and De Camilli, P. (2012) The Inositol 5-phosphatases: insights from the Lowe Syndrome Protein OCRL. Trends. Biochem. Sci. 37(4):134-143. (PMCID: PMC3323734) (PMID: 22381590).

96.  Nakatsu, F., Baskin, J.M., Chung, J., Tanner, L.B., Shui, G., Lee, S.Y., Pirruccello, M., Hao, M., Ingolia, N.T., Wenk, M.R., and De Camilli, P. (2012). PtdIns4P synthesis at the plasma membrane and its impact on PtdIns(4,5)P2 dynamics to control plasma membrane identity. J. Cell Biol. 199: 1003-1016. (PMCID: PMC3518224) (PMID: 23229899).

95. Lou, X, Fan F, Messa M, Raimondi A, Wu Y, Looger LL, Ferguson SM, De Camilli P. (2012) Reduced release probability prevents vesicle depletion and transmission failure at dynamin mutant synapses. Proc Natl Acad Sci 109(8):E515-23. (PMCID: PMC3286982) (PMID:22308498).

94.  Idevall-Hagren O, Dickson EJ, Hille B, Toomre DK, and De Camilli P. (2012) Optogenetic control of phosphoinositide metabolism. Proc. Natl. Acad. Sci. 109: 2316-2323. (PMCID: PMC3435206, PMID: 22847441).

93.  Ferguson, S.M., and De Camilli, P. (2012) Dynamin, a membrane-remodeling GTPase. Nature Rev. Mol. Cell Biol. 13: 75-88. (PMCID: PMC3519936) (PMID: 22233676).

92.  Clarke, D., Bhardwaj, N., Gerstein, M.B. (2012) Novel insights through the integration of structural and functional genomics data with protein networks. J Struct Biol 179: 320-326. (PMID: 22343087).

91.  Cheadle, L., Biederer, T. (2012) The novel synaptogenic protein Farp1 links postsynaptic cytoskeletal dynamics and transsynaptic organization. J Cell Biol. 199: 985-1001. (PMCID: PMC3518221, PMID: 23209303).

2011

90. Yip, K.Y., Utz, L., Sitwell, S., Hu, X., Sidhu, S.S., Turk, B.E., Gerstein, M., Kim, P.M. (2011) Identification of specificity determining residues in peptide recognition domains using an information theoretic approach applied to large-scale binding maps. BMC Biology 9:53. (PMCID: PMC3224579) (PMID: 21835011).

89. Shen, H., Ferguson, S.M., Dephoure, N., Park, R., Volpicelli-Daley, L., Gygi, S., Schlessinger, J., and De Camilli P. (2011) Constitutive activated Cdc42-associated kinase (Ack) phosphorylation at arrested endocytic clathrin-coated pits of cells that lack dynamin. Mol Biol Cell. 22(4): 493-502. (PMCID: PCM3038647) (PMID: 21169560).

88. Rozowsky, J. , Abyzov, A., Wang, J., Alves, P., Raha, D., Harmanci, A., Leng, J., Bjornson, R., Kong, Y., Kitabayashi, N., Bhardwaj, N., Rubin, M., Snyder, M., Gerstein, M. (2011) AlleleSeq: analysis of allele-specific expression and binding in a network framework. Molecular Systems Biology 7:522. (PMCID: PMC3208341) (PMID: 21811232).

87. Rinehart J, Vazquez N, Kahle KT, Hodson CA, Ring AM, Gulcicek EE, Louvi, A., Bobadilla, N., Gamba, G., and Lifton, R.P. (2011) WNK2 kinase is a novel regulator of essential neuronal cation-chloride cotransporters. J. Biol. Chem. 286: 30171-30180. (PMC: PMC3191056) (PMID: 21733846).

86. Raimondi, A., Ferguson, S.M., Lou, X., Armbruster, M., Paradise, S., Giovedi, S., Messa, M., Kono, N., Takashi, J., Cappello, V., O’Toole, E., Ryan, T.A., and De Camilli, P. (2011) Overlapping role of dynamin isoforms in synaptic vesicle endocytosis. Neuron 70:1100-1114. (PMCID: PMC3190241) (PMID: 21689597).

85. Pirruccello, M., Swan, L.E., Folta-Stogniew, E., and De Camilli, P. (2011) Recognition of the F&H motif by the Lowe Syndrome protein OCRL.  Nat Struct Mol Biol. 2011 18(7):789-795. (PMCID: PMC3130824) (PMID: 21666675).

84. Milosevic, I., Giovedi, S., Lou, X., Raimondi, A., Collesi, C., Paradise, S., O’Toole, E., Ferguson, S., Cremona, O., DeCamilli, P. (2011) Recruitment of endophilin to clathrin coated pit necks is required for uncoating but is dispensable for fission. Neuron 72: 587-601. (PMCID: PMC3258500) (PMID: 22099461).

83. Luo, R. and Zhao H. (2011). Bayesian hierarchical modeling for signaling pathway inference from single cell interventional data. Annals of Applied Statistics, Ann Appl Stat. 5(2A):725–745. (PMCID: PMC3233205) (PMID: 22162986).

82. Kiraly, D.D., Stone, K.L., Colangelo, C.M., Abbott, T., Wang, Y., Mains, R.E., Eipper, B.A. (2011). Identification of Kalirin-7 as a Potential Post-Synaptic Density Signaling Hub. J Proteome Res. 10(6):2828-2841. (PMCID: PMC3107868) (PMID: 21488700).

81. Gianoulis, T.A., Agarwal, A., Snyder, M., Gerstein, M.B. (2011) The CRIT framework for identifying cross patterns in systems biology and application to chemogenomics. Genome Biology, 12:R32. (PMCID: PMC3129682) (PMID: 21453526).

80. Bordner, K.A., George, E.D., Carlyle, B.C., Duque, A., Kitchen, R.R., Lam, T.T., Colangelo, C.M., Stone, K.L., Abbott, T.B., Mane, S.M., Nairn, A.C., Simen, A.A. (2011) Functional genomic and proteomic analysis reveals disruption of myelin related genes and translation in a mouse model of early life neglect. Front Psychiatry. 2:18. (PMCID: PMC3098717) (PMID: 21629843) (YPED Repository).

79. Bianchetta MJ, Lam TT, Jones SN, Morabito MA. (2011). Cyclin-dependent kinase 5 regulates PSD-95 ubiquitination in neurons. J Neurosci. 31:12029-35. (PMCID: PMC3190401) (PMID: 21849563) (YPED Repository).

2010

78. Yim, Y.I., Sun, T., Wu, L.G., Raimondi, A., De Camilli, P., Eisenberg, E., Greene, L.E. (2010) Endocytosis and clathrin-uncoating defects at synapses of auxilin knockout mice. Proc Natl Acad Sci 2;107(9):4412-7. (PMCID: PMC2840126) (PMID:20160091).

77. Xu, W., Wang, P., Petri, B., Zhang, Y., Tang, W., Sun, L., Kress, H., Mann, T., Shi, Y., Kubes, P., Wu, D. (2010) Integrin-induced PIP5K1C kinase polarization regulates neutrophil polarization, directionality, and in vivo infiltration. Immunity 33(3):340-50. (PMCID: PMC2947797) (PMID:20850356).

76. Wu, M., Huang, B., Graham, M., Raimondi, A., Heuser, J.E., Zhuang, X., De Camilli, P. (2010) Coupling between clathrin-dependent endocytosis budding and F-BAR-dependent tubulation in a cell-free system. Nat. Cell Bio. 9: 902-908. (PMCID: PMC3338250) (PMID: 20729836).

75. Volpicelli-Daley, L.A., Lucast, L., Gong, L.W., Sasaki, J., Sasaki, T., Abrams, C.S., Kanaho, Y., and De Camilli P. (2010) Phosphatidylinositol 4-phosphatase 5-kinases and phosphatidylinositol 4,5-bisphosphate synthesis in the brain. J. Biol. Chem. 285: 28708-28714. (PMCID: PMC2937898) (PMID: 20622009).

74. Swan, L.E., Tomasini, L., Pirruccello, M., Lunardi, J., and De Camilli, P. (2010) Two closely related endocytic proteins that share a common OCRL binding motif with APPL1. Proc. Nat. Acad. Sci. 107: 3511-16. (PMCID: PMC2840420) (PMID: 20133602).

73. Sumioka A, Yan D, Tomita S. (2010). TARP phosphorylation regulates synaptic AMPA receptors through lipid bilayers. Neuron 66: 755-67. (PMCID: PMC2887694) (PMID: 20547132).

72. Rajagopal, C., Stone, K., Mains, R., and Eipper, B. (2010) Secretion Stimulates Intramembrane Proteolysis of a Secretory Granule Membrane Enzyme. J. Biol. Chem. 285: 34632-42. (PMCID: PMC2966079) (PMID: 20817724) (YPED Repository).

71. Nakatsu F, Perera R, Lucast L, Zoncu R, Domin J, Gertler F, Toomre D, and De Camilli P. (2010) Dual role of the inositol 5-phosphatase SHIP2 in clathrin-coated pit dynamics and signaling. J. Cell Biol. 190: 307-315. (PMCID: PMC2922640) (PMID: 20679431).

70. Lam, H.Y.K., Kim, P.M., Tonikian, R., Mok J., Turk, B., Bader, G., Boone. C., Snyder, M., Gerstein, M.B. (2010) MOTIPS: An Automated Motif Analysis Pipeline for Predicting Targets of Modular Protein Domains, BMC Bioinformatics 11: 243. (PMCID: PMC2882932) (PMID: 20459839).

69. Hu, F., Padukkavidana, T., Vægter, C.B., Brady, O.A., Zheng, Y., Mackenzie, I.R., Feldman, H.H., Nykjaer, A., Strittmatter, S.M. (2010) Sortilin-Mediated Endocytosis Determines Levels of the Fronto-Temporal Dementia Protein, Progranulin. Neuron 68: 654-667. (PMCID: PMC2990962) (PMID: 21092856).

68. Gimbel, D.A., Nygaard, H.B., Coffey, E.E., Gunther, E.C., Lauren, J., Gimbel, Z.A., Strittmatter, S.M. (2010) Memory Impairment in Transgenic Alzheimer Mice Requires Cellular Prion Protein. J. Neurosci, 30: 6367-6674. (PMCID: PMC3323924) (PMID: 20445063).

67. Fogel, A.I., Li, Y., Wang, Q., Lam, T.T., Modis, Y. and Biederer, T. (2010) N-Glycosylation at the SynCAM immunoglobulin interface modulates synaptic adhesion. J. Biol. Chem. 285: 34864-34874 (featured on cover). (PMCID: PMC2966101) (PMID: 20739279).

66. Alexander, J.K., Govind, A.P., Drisdel, R.C., Blanton, M.P., Vallejo, Y., Lam, T.T. and Green, W.N. (2010) Palmitoylation of Nicotinic Acetylcholine Receptors. J. Molec. Neurosci. 40:12-20. (PMCID: PMC3523180) (PMID: 19693711).

2009

65. Zoncu, R., Perera, R., Balkin DM, Toomre D, and De Camilli P. (2009) A phosphoinositide switch controls the maturation and signaling properties of APPL endosomes. Cell 136:1110-1121. (PMCID: PMC2705806) (PMID: 19303853)

64. Verstreken, P., Ohyama, T., Haueter, C., Habets, R., Lin, Y.Q., Swan, L.E., Ly, C.V., Venken, K., De Camilli. P., and Bellen, H.J. (2009) Tweek, an evolutionary conserved protein with no obvious motifs, is required for synaptic vesicle recycling. Neuron 63:203-215. (PMCID: PMC2759194) (PMID: 19640479).

63. Vasudevan L, Jeromin A, Volpicelli-Daley L, De Camilli P, Holowka D, and Baird B. (2009) The beta and gamma isoforms of type I PIP5 kinase regulate distinct stages of Ca2+ signaling in mast cells. J. Cell Sci.122:2567-2574. (PMCID: PMC2704887) (PMID: 19549683).

62. Stone, K.L. and Williams, K.R (2009) Reverse-Phase HPLC Separation of Enzymatic Digests of Proteins in The Protein Protocols Handbook, 3rd edition (Walker, J., ed.) 937-946.

61. Stone, K.L. , Gulcicek E. E. and Williams, K.R (2009) Enzymatic Digestion of Proteins in Solution and in SDS Polyacrylamide Gels in The Protein Protocols Handbook, 3rd edition (Walker, J., ed.) 901-913.

60. Rinehart, J., Maksimova, Y.D. , Tanis, J.E., Stone, K.E., Hodson, C.A., Zhang, J., Risinger, M., Pan, W., Wu, D., Colangelo, C.M., Forbush, B., Joiner, C.H., Gulcicek, E.E., Gallagher, P.G., and Lifton, R.P. (2009) Sites of regulated phosphorylation that control K-Cl cotransporter activity. Cell. 138(3):525-36. (PMCID: PMC2811214) (PMID: 19665974).

59. Rajagopal, C., Stone, K., Francone, V, Mains, R., Eipper, B. (2009) Secretory Granule to the Nucleus: Role of a multiply phosphorylated intrinsically unstructured domain. J. Biol. Chem., 284:25723-25734. (PMCID: PMC2757974) (PMID: 19635792).

58. Qin Y, Li L, Pan W, Wu D. (2009) Regulation of phosphatidylinositol kinases and metabolism by wnt3a and dvl. J. Biol. Chem. 284: 22544-22548. (PMCID: PMC2755661) (PMID: 19561074).

57. Pang, H., Tong. T., Zhao. H. (2009) Shrinkage-based diagonal discriminant analysis and its applications in high-dimensional data. Biometrics, 61: 1021-1029. (PMCID: PMC2794982) (PMID: 19302409)

56. McCrea H and De Camilli P (2009) Mutations in Phosphoinositide Metabolizing Enzymes and Human Disease. Physiology. 24:8-16. (PMCID: PMC3499097) (PMID: 19196647)

55. Mao, Y.S., Yamaga, M., Zhu, X., Wei, Y., Sun, H.Q., Wang, J., Yun, M., Wang, Y., Di Paolo, G., Bennett, M., Mellman, I., Abrams, C.S., De Camilli, P., Lu, C.Y., and Yin, H. (2009) Essential and unique roles of PIP5K-γ and -α in FCγ receptor-mediated phagocytosis. J. Cell Biol. 184:281-296. (PMCID: PMC2654300) (PMID: 19153220).

54. Mao, Y., Balkin, D. M., Zoncu, R., Erdmann, K., Tomasini, L., Hodsdon, M. E., De Camilli, P. (2009) A PH domain within the Lowe Syndrome protein OCRL bridges clathrin mediated membrane trafficking to phosphoinositide metabolism. EMBO J. 28:1831-1842. (PMCID: PMC2711190) (PMID: 19536138).

53. Luo, R., Colangelo, C.M., Sessa, W.C., Zhao, H. (2009) Bayesian analysis of iTRAQ data with nonrandom missingness: Identification of differentially expressed proteins. Stat Biosci. 1(2):228-245. (PMCID: PMC3172970) (PMID: 21927625)

52. Liu, Y., Kim, I., Zhao, H., (2009) Protein interaction predictions from diverse sources. New Developments in Biostatistics and Bioinformatics, (Eds J.Fan, X. Lin, and J.S. Liu), pp 159-178. World Scientific, New Jersey.

51. Li, X., Zhao, H. (2009) Weighted random subspace method for high dimensional data classification. Statistics and Its Interfaces, 2:153-159. (PMCID: PMC3170928) (PMID: 21918713)

50. Laurén, J., Gimbel, D.A., Nygaard, H.B., Gilbert JW, Strittmatter SM. (2009) Cellular Prion Protein Mediates Impairment of Synaptic Plasticity by Amyloid-ß Oligomers. Nature 457:1128-1132. (PMCID: PMC2748841) (PMID: 19242475).

49. Hirunsatit, R., George, E.D., Lipska, B.K., Elwafi, H.M., Sander, L., Yrigollen, C.M., Gelernter, J., Mutirangura, A., Grigorenko, E.L., Lappalainen, J., Nairn, A.C., Kleinman, J.E., and Simen. A.A. (2009) Twenty-one-base-pair insertion polymorphism creates an enhancer element and potentiates SLC6A1 GABA transporter promoter. Pharmacogenetics and Genomics. 19: 53-65, (PMCID: PMC2791799) (PMID: 19077666).

48. Frost A, Unger VM and De Camilli P. (2009) The BAR domain superfamily: Membrane-molding macro-molecules. Cell. 137: 191-196. (PMID: 19379681).

47. Ferguson S, Raimondi A, Paradise S, Shen H, Mesaki K, Destaing O, Ko G, Cremona O, O'Toole E, and De Camilli P. (2009) Coordinated actions of actin and BAR proteins upstream of dynamin at endocytic clathrin-coated pits. Dev. Cell. 17:811-822. (PMCID: PMC2861561) (PMID: 20059951).

46. Fairn GD, Ogata K, Botelho RJ, Stahl PD, Anderson RA, De Camilli P, Meyer T, Wodak S, and Grinstein S. (2009) An electrostatic switch displaces phosphatidylinositol phosphate kinases from the membrane during phagocytosis. J. Cell. Biol. 187:701-714 (PMCID: PMC2806594) (PMID: 19951917).

2008

45. Yu, W., He, Z., Liu, J. and Zhao, H. (2008) Improving mass spectrometry peak detection using multiple peak alignment results. J Proteome. Res 7, 123-129. (PMID: 18030999).

44. Voronov, S.V., Frere, S.G., Giovedi, S., Pollina, E. A., Schmidt, C., Akeson, E.C., Wenk, M.R., Zhang, H., Cimasoni, L., Borel, C., Antonorakis, S.E., Arancio, O., Davisson, M.T., Gardiner, K., De Camilli, P. and Di Paolo, G. (2008) SYNJ1-linked phosphoinositide dyshomeostasis and cognitive deficits in mouse models of Down Syndrome. Proc. Nat. Acad. Sci. 105: 9415-9420. (PMCID: PMC2453748) (PMID: 18591654).

43. Tong, T., Zhao, H., (2008) Practical guidelines for assessing power and false discovery rate for a fixed sample size in microarray experiments. Statistics in Medicine, 27: 1960-1972. (PMCID: PMC3157366) (PMID: 18338314)

42. Pan, W., S.C. Choi, H. Wang, Y. Qin, L. Volpicelli-Daley, L. Swan, L. Lucast, C. Khoo, X. Zhang, L. Li, C.S. Abrams, S.Y. Sokol, and D. Wu, (2008) Wnt3a-mediated formation of phosphatidylinositol 4,5-bisphosphate regulates LRP6 phosphorylation. Science 321 (5894): 1350-1353. (PMCID: PMC2532521) (PMID: 18772438).

41. Liu, Y., Kim, I., Zhao, H. (2008) Protein interaction predictions from diverse sources. Drug Discovery Today, 13: 409-416. (PMCID: PMC3164358) (PMID: 18468558)

40. Liu, J., Yu, W., Wu, B. and Zhao, H. (2008) Bayesian mass spectra peak alignment from mass charge ratios. Cancer Inform. 6:217-241. (PMCID: PMC2623297) (PMID: 19259411)

39. Hayashi, M., Raimondi, A., O'Toole E, Paradise S, Collesi C, Cremona O, Ferguson SM, and De Camilli, P. (2008) Cell and stimulus dependent heterogeneity of synaptic vesicle endocytic recycling revealed by studies of dynamin 1-null neurons. Proc. Nat. Acad. Sci. 105: 2175-2180. (PMCID: PMC2538894) (PMID: 18250322).

38. Gong, L.W. and De Camilli P. (2008) Regulation of postsynaptic AMPA responses by synaptojanin I. Proc. Nat. Acad. Sci. 105: 17561-17566. (PMCID: PMC2579885) (PMID: 18987319).

37. Frost, A., Perera, R., Roux, A., Spasov, K., Destaing, O., Egelman, E.H., De Camilli, P. and Unger, V.M. (2008) Structural basis of membrane invagination by F-BAR domains. Cell 132, 807-817. (PMCID: PMC2384079) (PMID: 18329367).

36. Destaing, O., Sanjay, A., Itzstein, C., Horne, W.C., Toomre, D., De Camilli, P., Baron, R.. (2008) The tyrosine kinase activity of c-Src regulates actin dynamics and organization of podosomes in osteoclasts. Mol Biol Cell. 19(1):394-404. (PMCID: PMC2174183) (PMID:17978100)

35. Chen, L., Tong, T., Zhao, H. (2008) Considering dependence among genes and markers for false discovery control in eQTL mapping. Bioinformatics, 24: 2015-2022. (PMCID: PMC2732206) (PMID: 18635565). 

34. Bjornson, R.D., Carriero, N.J., Colangelo, C., Shifman, M., Cheung, K.H., Miller, P.L. and Williams, K. (2008) X!!Tandem, an improved method for running X!tandem in parallel on collections of commodity computers. J Proteome. Res 7(1), 293-299. (PMID: 17902638).

2007

33. Zoncu, R., Perera, R.M., Sebastian, R., Nakatsu, F., Chen, H., Balla, T., Ayala, G., Toomre, D. and De Camilli, P.V. (2007) Loss of endocytic clathrin-coated pits upon acute depletion of phosphatidylinositol 4,5-bisphosphate. Proc. Natl. Acad. Sci. 104, 3793-3798. (PMCID: PMC1805489) (PMID: 17360432).

32. Yu, W., Liu, J., Colangelo, C., Gulcicek, E. and Zhao, H. (2007) A new protocol of analyzing isotope-coded affinity tag data from high-resolution LC-MS spectrometry. Comput. Biol. Chem 31, 215-221. (PMID: 17499548).

31. Yu, E.Z., Burba, A.E. and Gerstein, M. (2007) PARE: a tool for comparing protein abundance and mRNA expression data. BMC. Bioinformatics. 8, 309 - 313. (PMCID: PMC2000916) (PMID: 17718915).

30. Volpicelli-Daley, L. and De Camilli, P. (2007) Phosphoinositides' link to neurodegeneration. Nat. Med. 13, 784-786. (PMID: 17618267).

29. Stone, K.L., Crawford, M., McMurray, W., Williams, N. and Williams, K.R. (2007) Identification of Proteins Based on MS/MS Spectra and Location of Post-translational Modifications. In: Peptide Characterization and Application (Fields, G., Ed.), Vol. 386, pp. 57-77. Humana Press, Totowa, NJ. (PMID: 18604942).

28. Stone, K., Bjornson, R.D., Blasko, G., Cofrancesco, R., Carriero, N.J., Colangelo, C., Crawford, J., Crawford, M., DaSilva, N., Deluca, J., Elliott, J., Elliott, M., Flory, P., Folta-Stogniew, E., Gulcicek, E., Kong, Y., Lam, T., Lee, J., Lin, A., LoPresti, M., Mane, S., McMurray, W., Tikhonova, I., Westman, S., Williams, N., Wu, T., Zhao, H. and Williams, K. (2007) Invited Review. Keck Foundation Biotechnology Resource Laboratory, Yale University, Yale Journal Biology & Medicine 80, 195-211.

27. Shifman, M.A., Li, Y., Colangelo, C.M., Stone, K.L., Wu, T.L., Cheung, K.H., Miller, P.L. and Williams, K.R. (2007) YPED: a web-accessible database system for protein expression analysis. J Proteome. Res 6, 4019-4024. (PMID: 17867667).

26. Olausson, P., Jentsch, J.D., Krueger, D.D., Tronson, N.C., Nairn, A.C. and Taylor, J.R. (2007) Orbitofrontal cortex and cognitive-motivational impairments in psychostimulant addiction: evidence from experiments in the non-human primate. Ann. N. Y. Acad. Sci. 1121, 610-638. (PMID: 17698993).

25. Mani, M., Lee, S.Y., Lucast, L., Cremona, O., Di Paolo, G., De Camilli, P. and Ryan, T.A. (2007) The dual phosphatase activity of synaptojanin1 is required for both efficient synaptic vesicle endocytosis and reavailability at nerve terminals. Neuron 56, 1004-1018. (PMID: 18093523).

24. Krueger, D.D. and Nairn, A.C. (2007) Expression of PKC substrate proteins, GAP-43 and neurogranin, is downregulated by cAMP signaling and alterations in synaptic activity. Eur. J Neurosci. 26, 3043-3053. (PMID: 18005072).

23. Fogel, A.I., Akins, M.R., Krupp, A.J., Stagi, M., Stein, V. and Biederer, T. (2007) SynCAMs organize synapses through heterophilic adhesion. J Neurosci. 27, 12516-12530. (PMID: 18003830).

22. Ferguson, S.M., Brasnjo, G., Hayashi, M., Wölfel, M., Collesi, C., Giovedi, S., Raimondi, A., Gong, L.W., Paradise, S., O'Toole, E., Flavell, R., Cremona, O., Miesenböck, Ryan, T.A. and De Camilli, P. (2007) A Selective Activity Dependent Requirement for Dynamin 1 in Synaptic Vesicle Endocytosis. Science. 316: 570-574. (PMID: 17463283).

21. Erdmann, K.S., Mao, Y., McCrea, H.J., Zoncu, R., Lee, S., Paradise, S., Modregger, J., Biemesderfer, D., Toomre, D. and De Camilli, P. (2007) A role of the Lowe syndrome protein OCRL in early steps of the endocytic pathway. Dev. Cell 13, 377-390. (PMCID: PMC2025683) (PMID: 17765681).

20. Andrade, E.C., Krueger, D.D. and Nairn, A.C. (2007) Recent advances in neuroproteomics. Curr. Opin. Mol. Ther. 9, 270-281. (PMID: 17608026).

2006

19. Yu, W., Wu, B., Liu, J., Li, X., Stone, K., Williams, K.R. and Zhao, H. (2006) MALDI-MS data analysis for disease biomarker discovery. Methods Mol. Biol. 328, 199-216. (PMID: 16785651).

18. Yu, W., Wu, B., Lin, N., Stone, K., Williams, K. and Zhao, H. (2006) Detecting and aligning peaks in mass spectrometry data with applications to MALDI. Comput. Biol. Chem 30, 27-38. (PMID: 16298163).

17. Yu, W., Wu, B., Huang, T., Li, X., Williams, K. and Zhao, H. (2006) Statistical methods in proteomics. In: Springer Handbook of Engineering Statistics (Pham, H., Ed.), pp. 623-638

16. Yu, W., Li, X., Liu, J., Wu, B., Williams, K.R. and Zhao, H. (2006) Multiple peak alignment in sequential data analysis: a scale-space-based approach. IEEE/ACM. Trans. Comput. Biol. Bioinform. 3, 208-219, (PMID: 17048459).

15. Wu, T. (2006) Two-Dimensional Difference Gel Electrophoresis. In: New and Emerging Proteomics Techniques (Nedelkov, D. and Nelson, R., Eds.), Vol. 328, Chapter 5, pp. 71-96. Humana Press, Totowa, NJ.

14. Wu, B., Abbott, T., Fishman, D., McMurray, W., Mor, G., Stone, K., Ward, D., Williams, K. and Zhao, H. (2006) Ovarian Cancer Classification based on Mass Spectrometry Analysis of Sera. Bioinformatics. 19, 1636-1643.

13. Perera, R.M., Zoncu, R., Lucast, L., De Camilli, P. and Toomre, D. (2006) Two synaptojanin 1 isoforms are recruited to clathrin-coated pits at different stages. Proc. Natl. Acad. Sci. 103, 19332-19337. (PMCID: PMC1693868) (PMID: 17158794).

12. Itoh, T. and De Camilli, P. (2006) BAR, F-BAR (EFC) and ENTH/ANTH domains in the regulation of membrane-cytosol interfaces and membrane curvature. Biochim. Biophys. Acta 1761, 897-912. (PMID: 16938488).

11. Gulcicek, E.E., Colangelo, C.M., McMurray, W., Stone, K., Wu, T., Zhao, H., Spratt, H., Kurosky, A., Wu, B. and Williams, K.R. (2006) Proteomics and the Analysis of Proteomic Data: An Overview of Current Protein-Profiling Technologies. In: Current Protocols in Bioinformatics (Baxevanis, A.D., Davison, D.B., Page, R.D.M., Petsko, G.A., Stein, L.D. and Stormo, G.D., Eds.), p. 13.1.1-13.1.13. John Wiley & Sons, Inc, Hoboken, NJ, (PMID: 18428746).

10. Folta-Stogniew, E. (2006) Oligomeric states of proteins determined by size-exclusion chromatography coupled with light scattering, absorbance, and refractive index detectors. In: New and Emerging Proteomics Techniques (Nedelkov, D. and Nelson, R., Eds.), Vol. 328, pp. 97-112. Humana Press, Totowa, NJ, (PMID: 16785643)

9. Di Paolo, G. and De Camilli, P. (2006) Phosphoinositides in cell regulation and membrane dynamics. Nature 443, 651-657. (PMID: 17035995)

8. Colangelo, C.M. and Williams, K.R. (2006) Isotope-coded affinity tags for protein quantification. Methods Mol. Biol. 328, 151-158. (PMID: 16785647)

7. Bruce, C., Shifman, M.A., Miller, P. and Gulcicek, E.E. (2006) Probabilistic enrichment of phosphopeptides by their mass defect. Anal. Chem 78, 4374-4382. (PMCID: PMC2547851) (PMID: 16808444).

2005

6. Svenningsson, .P, Nairn, A.C. and Greengard, P. (2005) DARPP-32 mediates the actions of multiple drugs of abuse. AAPS J. 7(2):E353-60. (PMCID: PMC2750972) (PMID:16353915).

5. Shin, H.W., Hayashi, M., Christoforidis, S., Lacas-Gervais, S., Hoepfner, S., Wenk, M.R., Modregger, J., Uttenweiler-Joseph, S., Wilm, M., Nystuen, A., Frankel, W.N., Solimena, M., De Camilli, P. and Zerial, M. (2005) An enzymatic cascade of Rab5 effectors regulates phosphoinositide turnover in the endocytic pathway. J Cell Biol. 170, 607-618. (PMCID: PMC2171494) (PMID: 16103228).

4. Shifman, M., Sun, K., Colangelo, C., Cheung, K., Miller, P. and Williams, K. (2005) YPED: A Proteomics Database for Protein Expression Analysis. Symposium of American Medical Informatics Association (AMIA), October 22-26, 2005, Washington, DC. (PMCID: PMC1560545) (PMID: 16779398).

3. Lee, S.Y., Voronov, S., Letinic, K., Nairn, A.C., Di Paolo, G. and De Camilli, P. (2005) Regulation of the interaction between PIPKI gamma and talin by proline-directed protein kinases. J Cell Biol. 168, 789-799. (PMCID: PMC2171813) (PMID: 15738269).

2. Jin, M., Bateup, H., Padovan, J.C., Greengard, P., Nairn, A.C. and Chait, B.T. (2005) Quantitative analysis of protein phosphorylation in mouse brain by hypothesis-driven multistage mass spectrometry. Anal. Chem 77, 7845-7851. (PMID: 16351129).

1. Gulcicek, E.E., Colangelo, C.M., McMurray, W., Stone, K., Williams, K., Wu, T., Zhao, H., Spratt, H., Kurosky, A., Wu, B. (2005) Proteomics and the analysis of proteomic data: an overview of current protein-profiling technologies. In Current Protocols in Bioinformatics (A. D. Baxevanis, D. B. Davison, R. D. M. Page, G. A. Petsko, L. D. Stein and G. D. Stormo, eds) pp 13.1.1 - 13.1.31. John Wiley & Sons Inc, Hoboken, NJ. (PMID: 18428746).

Poster Abstracts:

2012

45. Colangelo, C., Abbott, T., Shifman, M., Ivosev, G., Chung, L., Sakaue, F., Cox, D., Tate, S.A., Bonner, R., Nairn, A., Rinehart, J., Williams, K. (2012) Development of Targeted Proteome Assays. ASMS 2012.  Poster.

2011

44. Musante, V., Andrade, E.C., Horiuchi, A., Greengard, P. and Nairn, A.C. (2011) Regulation of protein phosphatase 2A by ARPP-16 and MAST kinase in striatal medium spiny neurons. Society for Neuroscience Annual Meeting, Washington DC, Nov 2011.

2010

43. Wiseman, S.L., Nairn, A.C. (2010) Stimulation-induced degradation of eukaryotic elongation factor-2 kinase (EF2K) by the ubiquitin-proteasome system. Soc Neurosci Abstr.

42. Fleming, M.R., Kronengold, J., Brown, M.R., Yan, Y., Chen, H., Lam, T.T., Sigworth, F., Nairn, A.C. and L.K. Kaczmarek. (2010) Phosphorylation that activates Slack sodium-activated potassium channels may alter channel-protein interactions at the plasma membrane. Soc. Neurosci. Abstr. (CD ROM) 340: 17.

41. Craft, G.E., Stone, K.L., Nairn, A.C. (2010) Affinity purification of ubiquitinated proteins from rat brain tissue. Soc Neurosci Abstr. 639.20.

40. Colangelo, C. James Farmar, Alexander R. Ivanov, Chris Kinsinger, Jeffrey A. Kowalak, Karl Mechtler Brett Phinney, Manfred R. Raida, Susan T. Weintraub. (2010) ABRF sPRG2010 Study: Multi-Laboratory Evaluation of a Phosphopeptide Standard for Proteomics, ABRF Annual Meeting, Sacramento, CA, March 21-23.

2009

39. Fleming MR, Kronengold J, Chen H, Yan Y, Lam TT, Gulcicek EE, Sigworth F, Nairn AC, Kaczmarek LK. (2009) Identification of regulatory phosphorylation sites in sodium activated potassium (K(Na) channels. Soc Neurosci Abstr (CD ROM) 819: 19.

38. Fleming, M.R., Brown, M.R., Kaczmarek, L.K. (2009) Activation and phosphorylation of Slack-B potassium channels alters mass distribution at the plasma membrane. Soc. Neurosci. Abstr. (CD ROM) 819:18.

37. Voss, E., Biederer, T., Wu, T., Easterling, M.L., LoPresti, M., Williams, K.R., Lam, T.T. (2009) Method Optimization for the Determination of Protein Site of N-Glycosylation: Case Study for SynCAM1, 57th ASMS Conference on Mass Spectrometry, May 31 - June4, 009, Philadelphia, PA.

36. Rinehart, Jesse; Y. D. Maksimova; J. E. Tanis; K. Stone; J. Zhang; M. Risinger; W. Pan; D. Wu; C. Colangelo; B. Forbush; C. H. Joiner; E. E. Gulcicek; P. G. Gallagher; R. P. Lifton, (2009) Quantitative phosphoproteomics identifies sites in K-Cl cotransporters that regulate cell volume and neuronal excitation, 57th ASMS Conference on Mass Spectrometry, May 31 – June 4, Philadelphia, PA.

35. Gulcicek, Erol E.; K. L Stone; C. Bruce; R. I. Herzog; R. S. Sherwin (2009), Improved sample preparation for phosphoproteome analysis of rat brain tissue, 57th ASMS Conference on Mass Spectrometry, May 31 – June 4, Philadelphia, PA.

2008

34. Stone, K., Colangelo, C., Gulcicek, E., Lam, T., Wu, T., LoPresti, M., Abbott, T., Crawford, M., Williams, N., Kanyo, J., Wilczak-Havill, K., Shifman, M. and Williams, K. (2008) The Mass Spectrometry and Proteomics Resource of the Keck Laboratory at Yale University. ABRF, Enabling Technologies in the Life Sciences, February 9, 2008, Salt Lake City, UT.

33. Stone, K., Wu, T., Gulcicek, E., Shifman, M., Kanyo, J., Colangelo, C. and Williams, K. (2008) The Art of DIGE. ABRF, Enabling Technologies in the Life Sciences, February 9, 2008, Salt Lake City, UT

32. Stipanovich, A., Wei, F.-Y., Lavaur, J., Stone, K., Colangelo, C., Gulcicek, E., Picciotto, M.R., Cedars, E., Greengard, P., Nairn, A.C. (2008) Characterization of the phosphorylation sites of the neuronal RhoGEF Lfc. Society for Neuroscience Meeting, Washington DC. November, 2008.

31. Olausson P, Krueger DD, Kedves AT, Nairn AC and Taylor JR (2008) Synaptic neuroadaptations following repeated cocaine exposure in Vervet monkeys – a proteomics analysis of the frontal cortex. Poster # 663,5/II30. Society for Neuroscience, November 14 – 19, 2008, Washington, DC.

30. Kedves AT, Olausson P, Nairn AC, Taylor JR (2008) Striatal Neuroadaptations Regulated by the Transcription Factor Sp1 are Induced by Chronic Cocaine Exposure in Rodents. Poster # 663.10/JJ5. Society for Neuroscience, November 14 – 19, 2008, Washington, DC.

29. Fleming, M.R., Yan, Y., Lam, T., Gulcicek, E., Nairn, A. and Kaczmarek, L.K. (2008). Regulation of Sodium-Activated Potassium (KNa) Channels by Phosphorylation. Soc. Neurosci. Abstr. (CD ROM) 430.18,

28. Bruce, C., Williams, K. and Gulcicek, E.E. (2008) Identification of Sites of Phosphorylation from Tandem Spectrometry Data by Logical Analysis of Result Classes. US HUPO Meeting, March 17, 2008, Washington, DC.

27. Biederer, T., Fogel, A.I., Stagi, M., Krupp, A. and Stein, V. (2008) SynCAMs organize synapses through heterophilic adhesion. Keystone Symposia, Molecular Basis for Biological Membrane Organization, January 13, 2008, Big Sky, MT.

26. Andrade, E.C., Colangelo, C., Wilczak-Havil, K., Taylor, J.R., Williams, K.R., Nairn, A.C., (2008) Identification of alterations in synaptic protein composition in cortico-limbic-striatal brain regions following chronic cocaine exposure in rats. Society for Neuroscience Meeting, Washington DC. November, 2009.

2007

25. Zimolo, Z., Stone, K., Wu, T., Colangelo, C., D'Souza, D.C., Williams, K. and Krystal, J.H. (2007) Plasma proteomic biomarkers in schizophrenia. International Congress on Schizophrenia Research, Colorado Springs, CO.

24. Stone, K., Colangelo, C., Gulcicek, E., Lam, T., Wu, T., LoPresti, M., Abbott, T., Crawford, M., Williams, N., Kanyo, J., Wilczak-Havill, K., Shifman, M. and Williams, K. (2007) Information on the MS & Proteomics Resource at Yale University. Northeast Regional Life Sciences Core Director Meeting, November 7, 2007, Cornell University, Ithaca, NY.

23. Sathyanesan, S.N., Girgenti, M.J. and Sathyanesan, M (2007). A Genomics and Proteomics Characterization of the Choroid Plexus: Implications for Antidepressant Action. Poster # 908.5/DD24. Society for Neuroscience, November 3 – 7, 2007, San Diego, California.

22. Taylor, J.R. and Olausson, P. (2007) Orbitofrontal cortex and addiction; Evidence from Primate Experiments. New York Academy of Science Meeting, " Linking Affect to Action; Critical Contributions of the Orbitofrontal Cortex," March 11 – 14, 2007, New York, NY.

21. Olausson, P., Krueger, D., Colangelo, C., Williams, K., Nairn, A. and Taylor, J. (2007) Proteomic analysis of persistent cortico-striatal synaptic neuroadaptations following repeated cocaine exposure in Vervet monkeys. Poster # 272.13/Z26. Society for Neuroscience, November 3 – 7, 2007, San Diego, California.

20. Kedves, A., Olausson, P., Krueger, D., Colangelo, C., Williams, K. Nairn, A., Taylor, J. (2007) Proteomic analysis of synaptic cortico-striatal neuroadaptations following repeated PCP exposure in Vervet monkeys. Poster # 498.22/HH3. Society for Neuroscience, November 3 – 7, 2007, San Diego, California

19. Fogel, A.I., Akins, M., Krupp, A., Stagi, M., Stein, V. and Biederer, T. (2007) SynCAMs 1/2 comprise a novel adhesion complex at central synapses. Poster # 571.7/H3. Society for Neuroscience, November 3 – 7, 2007, San Diego, California.

18. Collin-Hansen, C., Gulcicek, E.E., Williams, K.R., Colangelo, C.M., Stone, K.L. and Nairn, A.C. (2007) Phosphoproteome of Synaptoneurosomes from Cocaine Treated Rats, 55th ASMS Conference on Mass Spectrometry, Indianapolis, IN.

17. Andrade, E., Horiuchi, A., Wu, T., Mane, S., Stone, K., Greengard, P. and Nairn, A. (2007) The role and regulation of ARPP-16/19 in neurons. Society for Neuroscience, 2007 Meeting.

2006

16. Haspeslagh, D.C., Olausson, P., Taylor, J.R. and Allen, P.B. (2006) Spinophilin, a Synaptic Scaffolding Protein, Regulates Dopamine Signal Transduction Efficacy. Poster # C75/723.6. Society for Neuroscience, Oct. 14, 2006, Atlanta, GA.

15. Gulcicek, E.E., Shifman, M.A., Miller, P., Colangelo, C.M., Stone, K.L., Lam, T.T. and Bruce, C. (2006) High Probability MS Identification of Phosphopeptides by their Mass Defect. 54th ASMS Conference on Mass Spectrometry, May 28 – June 1, 2006.

14. Gulcicek, E.E. (2006) Protein and Phosphoprotein Profiling Strategies. The 4th International Forum on Post-Genome Technologies. September 25 – 26, 2006, Hongzhou, China. Invited Keynote speaker.

13. Collin-Hansen, C., Gulcicek, E.E., Wu, T., Williams, K.R. and Nairn, A.C. (2006a) Comparison of methods for enrichment of phosphoproteins and phosphopeptides from complex samples. Poster # 99.11/OO91, Atlanta, GA: Society for Neuroscience, Oct. 14, 2006.

12. Collin-Hansen, C, Gulcicek, E.E., Wu, T., Williams, K.R. and Nairn, A.C. (2006b) Development of a robust strategy for the enrichment of phosphorylated proteins and peptides from complex mixtures. 54th ASMS Conference on Mass Spectrometry, May 28 – June 1, 2006

11. Andrade, E., Colangelo, C., Berberich, M., Allen, P., Taylor, J.R., Williams, K.R. and Nairn, A.C. (2006) Identification of alterations in synaptic protein composition in cortico-limbic-striatal brain regions after chronic cocaine exposure in mice. Society for Neuroscience.

2005

10. Zimolo, Z., D'Souza, D.C., Perry, E., Krystal, J.H., Wu, T., Stone, K. and Williams, K. (2005) Proteomic analysis of antipsychotic response. International Congress on Schizophrenia Research 2005. Savannah, GA.

9. Yu, W., Li, X., Liu, J., Wu, B., Williams, K. and Zhao, H. (2005) Aligning peaks across multiple mass spectrometry data sets using a scale-space based approach. IEEE Computational Systems Bioinformatics Conference (CSB 2005), August 8-11, 2005, Stanford, CA.

8. Lam, T., McMurray, W., Stone, K., Gulcicek, E., Colangelo, C. and Williams, K. (2005) Optimization of multi-dimensional protein identification technologies (MudPIT) for Fourier transform ion cyclotron resonance (FT-ICR) mass spectrometry. 53rd ASMS Conference on Mass Spectrometry, June 5 - 9, 2005 San Antonio, TX.

7. Krueger, D.D., Olausson, P., Wu, T., Williams, K.R., Taylor, J.R. and Nairn, A.C., (2005) Proteomic analysis of persistent cortico-limbic-striatal neuroadaptations following repeated cocaine exposure in vervet monkeys. Program # 1030.6. Society for Neuroscience.

6. Hager, J., Tikhonova, I., Clarke, L., Voss, E., Lui, J., Zhao, H., Strittmatter, S., Nairn, A. and Williams, K. (2005) Establishing protocols for making and using protein arrays in an academic core facility. Chips-to-Hits Meeting, September 11-15, 2005, Boston, MA.

5. Gulcicek, E., Berberich, M., Colangelo, C., Lam, T., McMurray, W., Stone, K. and Williams, K.R. (2005) Mass Spectrometric Integration of Robust Phosphoprotein Profiling Strategies. 53rd ASMS Conference on Mass Spectrometry, June 5 - 9, 2005, San Antonio, TX.

4. Berberich, M., Stone, K., LoPresti, M., Weissman, S., Williams, K. and Colangelo, C. (2005) A comprehensive cellular snapshot using multiple protein profiling technologies. 53rd ASMS Conference on Mass Spectrometry, June 5 - 9, 2005 San Antonio, TX.

3. Andrade, E.C., Wu, T., Colangelo, C., Lam, T., Berberich, M., Stone, K., Allen, P.B., Taylor, J.R., Williams, K.R. and Nairn, A.C. (2005) Identification of alterations in synaptic protein composition following chronic cocaine exposure in mice. Program # 1030.5. Society for Neuroscience.

2004

2. Zimolo Z, Krystal JH, Perry EB, Wu T, Vangala S, Williams K, D’Souza DC. (2004) Proteomic analysis of glutamate modulation with riluzole in schizophrenia. Society for Neuroscience.

1. Olausson, P., Tronson, N.C., Kiraly, D.D., Krueger, D.D., Nairn, A.C. and Taylor, J.R. (2004) Selective cognitive-motivational alterations following prior cocaine exposure in monkeys. Program # 671.10. Society for Neuroscience. Washington, DC.