Software available within the Bioinformatics Core


  • GPMAW (from Lighthouse Data) is used for protein mass analyses including searches of MS/MS and MALDI data against imported databases or sequences, generation of theoretical protein digests and the resulting peptide masses, and compiling amino acid compositions from protein sequences.
    Documentation
  • SYBYL 8.0 (from Tripos) is a comprehensive tools for molecular modeling: structure building, optimization, and comparison; visualization of structures and associated data; annotation, hardcopy and screen capture capabilities; and a wide range of force fields. It includes SYBYL, to build, optimize, compare and visualize structures, interface for other modules; and MOLCAD, to visualize molecular surfaces and molecular properties (note: Usage is fee-based)
    Overview brochure