IPA Group Publications

Tam LK, Galiana G, Stockmann JP, Tagare H, Peters DC and Constable RT: Pseudo-random center placement O-space imaging for improved incoherence compressed sensing parallel MRI. Magn Reson Med. 2014 Jul 17; Epub 2014 Jul 17. PMID: 25042143


Scheinost D, Papademetris X and Constable RT: The impact of image smoothness on intrinsic functional connectivity and head motion confounds. Neuroimage. 2014 Jul 15;95 :13-21. Epub 2014 Mar 20. PMID: 24657356


Kelley BJ, Harel NY, Kim CY, Papademetris X, Coman D, Wang X, Hasan O, Kaufman A, Globinsky R, Staib LH, Cafferty WB, Hyder F and Strittmatter SM: Diffusion Tensor Imaging as a Predictor of Locomotor Function after Experimental Spinal Cord Injury and Recovery. J Neurotrauma. 2014 Jul 8; Epub 2014 Jul 8. PMID: 24779685


Cannon TD, Sun F, McEwen SJ, Papademetris X, He G, van Erp TG, Jacobson A, Bearden CE, Walker E, Hu X, Zhou L, Seidman LJ, Thermenos HW, Cornblatt B, Olvet DM, Perkins D, Belger A, Cadenhead K, Tsuang M, Mirzakhanian H, Addington J, Frayne R, Woods SW, McGlashan TH, Constable RT, Qiu M, Mathalon DH, Thompson P and Toga AW: Reliability of neuroanatomical measurements in a multisite longitudinal study of youth at risk for psychosis. Hum Brain Mapp. 2014 May;35 (5) :2424-34. Epub 2013 Aug 24. PMID: 23982962


Li S, Chan C, Stockmann JP, Tagare H, Adluru G, Tam LK, Galiana G, Constable RT, Kozerke S and Peters DC: Algebraic reconstruction technique for parallel imaging reconstruction of undersampled radial data: Application to cardiac cine. Magn Reson Med. 2014 Apr 18; Epub 2014 Apr 18. PMID: 24753213


Chenouard N, Smal I, de Chaumont F, Maška M, Sbalzarini IF, Gong Y, Cardinale J, Carthel C, Coraluppi S, Winter M, Cohen AR, Godinez WJ, Rohr K, Kalaidzidis Y, Liang L, Duncan J, Shen H, Xu Y, Magnusson KE, Jaldén J, Blau HM, Paul-Gilloteaux P, Roudot P, Kervrann C, Waharte F, Tinevez JY, Shorte SL, Willemse J, Celler K, van Wezel GP, Dan HW, Tsai YS, Ortiz de Solórzano C, Olivo-Marin JC and Meijering E: Objective comparison of particle tracking methods. Nat Methods. 2014 Mar;11 (3) :281-9. Epub 2014 Jan 19. PMID: 24441936


Huang X, Dione DP, Compas CB, Papademetris X, Lin BA, Bregasi A, Sinusas AJ, Staib LH and Duncan JS: Contour tracking in echocardiographic sequences via sparse representation and dictionary learning. Med Image Anal. 2014 Feb;18 (2) :253-71. Epub 2013 Nov 6. PMID: 24292554


Kucukelbir A, Sigworth FJ and Tagare HD: Quantifying the local resolution of cryo-EM density maps. Nat Methods. 2014 Jan;11 (1) :63-5. Epub 2013 Nov 10. PMID: 24213166


Scheinost D, Shen X, Finn E, Sinha R, Constable RT and Papademetris X: Coupled Intrinsic Connectivity Distribution analysis: a method for exploratory connectivity analysis of paired FMRI data. PLoS One. 2014;9 (3) :e93544. Epub 2014 Mar 27. PMID: 24676034

Jonas S, Zhou E, Deniz E, Huang B, Chandrasekera K, Bhattacharya D, Wu Y, Fan R, Deserno TM, Khokha MK and Choma MA: A novel approach to quantifying ciliary physiology: microfluidic mixing driven by a ciliated biological surface. Lab Chip. 2013 Nov 7;13 (21) :4160-3. PMID: 23970350


Garrison KA, Scheinost D, Worhunsky PD, Elwafi HM, Thornhill TA 4th, Thompson E, Saron C, Desbordes G, Kober H, Hampson M, Gray JR, Constable RT, Papademetris X and Brewer JA: Real-time fMRI links subjective experience with brain activity during focused attention. Neuroimage. 2013 Nov 1;81 :110-8. Epub 2013 May 17. PMID: 23684866


Finn ES, Shen X, Holahan JM, Scheinost D, Lacadie C, Papademetris X, Shaywitz SE, Shaywitz BA and Constable RT: Disruption of Functional Networks in Dyslexia: A Whole-Brain, Data-Driven Analysis of Connectivity. Biol Psychiatry. 2013 Oct 11; Epub 2013 Oct 11. PMID: 24124929


Scheinost D, Hampson M, Qiu M, Bhawnani J, Constable RT and Papademetris X: A graphics processing unit accelerated motion correction algorithm and modular system for real-time fMRI. Neuroinformatics. 2013 Jul;11 (3) :291-300. PMID: 23319241


Jaba IM, Zhuang ZW, Li N, Jiang Y, Martin KA, Sinusas AJ, Papademetris X, Simons M, Sessa WC, Young LH and Tirziu D: NO triggers RGS4 degradation to coordinate angiogenesis and cardiomyocyte growth. J Clin Invest. 2013 Apr 1;123 (4) :1718-31. PMID: 23454748


Constable RT, Scheinost D, Finn ES, Shen X, Hampson M, Winstanley FS, Spencer DD and Papademetris X: Potential use and challenges of functional connectivity mapping in intractable epilepsy. Front Neurol. 2013;4 :39. Epub 2013 May 22. PMID: 23734143


Onofrey JA, Staib LH and Papademetris X: Learning nonrigid deformations for constrained multi-modal image registration. Med Image Comput Comput Assist Interv. 2013;16 (Pt 3) :171-8. PMID: 24505758


Huang X, Dione DP, Lin BA, Bregasi A, Sinusas AJ and Duncan JS: Segmentation of 4D echocardiography using stochastic online dictionary learning. Med Image Comput Comput Assist Interv. 2013;16 (Pt 3) :57-65. PMID: 24505744


Constable RT, Vohr BR, Scheinost D, Benjamin JR, Fulbright RK, Lacadie C, Schneider KC, Katz KH, Zhang H, Papademetris X and Ment LR: A left cerebellar pathway mediates language in prematurely-born young adults. Neuroimage. 2013 Jan 1;64 :371-8. Epub 2012 Sep 12. PMID: 22982585


Onofrey JA, Staib LH and Papademetris X: FAST NONRIGID IMAGE REGISTRATION USING STATISTICAL DEFORMATION MODELS LEARNED FROM RICHLY-ANNOTATED DATA. Proc IEEE Int Symp Biomed Imaging. 2013; :580-583. PMID: 25000401

Zhang Z, Friedman D, Dione DP, Lin BA, Duncan JS, Sinusas AJ and Sampath S: Assessment of left ventricular 2D flow pathlines during early diastole using spatial modulation of magnetization with polarity alternating velocity encoding: A study in normal volunteers and canine animals with myocardial infarction. Magn Reson Med. 2012 Oct 8; Epub 2012 Oct 8. PMID: 23044637


DeLorenzo C, Papademetris X, Staib LH, Vives KP, Spencer DD and Duncan JS: Volumetric intraoperative brain deformation compensation: model development and phantom validation. IEEE Trans Med Imaging. 2012 Aug;31 (8) :1607-19. Epub 2012 May 2. PMID: 22562728


Deniz E, Jonas S, Khokha M and Choma MA: Endogenous contrast blood flow imaging in embryonic hearts using hemoglobin contrast subtraction angiography. Opt Lett. 2012 Jul 15;37 (14) :2979-81. PMID: 22825198


Kucukelbir A, Sigworth FJ and Tagare HD: A Bayesian adaptive basis algorithm for single particle reconstruction. J Struct Biol. 2012 Jul;179 (1) :56-67. Epub 2012 May 1. PMID: 22564910


Silva CT, Naveed N, Bokhari S, Baker KE, Staib LH, Ibrahim SM, Muchantef K and Goodman TR: Early assessment of the efficacy of digital infrared thermal imaging in pediatric extremity trauma. Emerg Radiol. 2012 Jun;19 (3) :203-9. Epub 2012 Feb 24. PMID: 22362422


Lu C, Chelikani S, Jaffray DA, Milosevic MF, Staib LH and Duncan JS: Simultaneous nonrigid registration, segmentation, and tumor detection in MRI guided cervical cancer radiation therapy. IEEE Trans Med Imaging. 2012 Jun;31 (6) :1213-27. Epub 2012 Feb 6. PMID: 22328178


Duque A, Coman D, Carlyle BC, Bordner KA, George ED, Papademetris X, Hyder F and Simen AA: Neuroanatomical changes in a mouse model of early life neglect. Brain Struct Funct. 2012 Apr;217 (2) :459-72. Epub 2011 Oct 8. PMID: 21984312


Tandon S, Wackers FJ, Inzucchi SE, Bansal S, Staib LH, Chyun DA, Davey JA and Young LH: Gender-based divergence of cardiovascular outcomes in asymptomatic patients with type 2 diabetes: results from the DIAD study. Diab Vasc Dis Res. 2012 Apr;9 (2) :124-30. Epub 2012 Jan 6. PMID: 22228772


Chen MK, Yasrebi M, Samii J, Staib LH, Doddamane I and Cheng DW: The utility of I-123 pretherapy scan in I-131 radioiodine therapy for thyroid cancer. Thyroid. 2012 Mar;22 (3) :304-9. Epub 2012 Feb 2. PMID: 22300251


Yuan S, Li J, Diener DR, Choma MA, Rosenbaum JL and Sun Z: Target-of-rapamycin complex 1 (Torc1) signaling modulates cilia size and function through protein synthesis regulation. Proc Natl Acad Sci U S A. 2012 Feb 7;109 (6) :2021-6. Epub 2012 Jan 23. PMID: 22308353


Ho HP, Wang F, Papademetris X, Blumberg HP and Staib LH: Fasciculography: robust prior-free real-time normalized volumetric neural tract parcellation. IEEE Trans Med Imaging. 2012 Feb;31 (2) :217-30. Epub 2011 Sep 12. PMID: 21914568


Hampson M, Stoica T, Saksa J, Scheinost D, Qiu M, Bhawnani J, Pittenger C, Papademetris X and Constable T: Real-time fMRI biofeedback targeting the orbitofrontal cortex for contamination anxiety. J Vis Exp. 2012 Jan 20; (59) Epub 2012 Jan 20. PMID: 22297729


Huang X, Dione DP, Compas CB, Papademetris X, Lin BA, Sinusas AJ and Duncan JS: A dynamical appearance model based on multiscale sparse representation: segmentation of the left ventricle from 4D echocardiography. Med Image Comput Comput Assist Interv. 2012;15 (Pt 3) :58-65. PMID: 23286114


Redding B, Choma MA and Cao H: Speckle-free laser imaging using random laser illumination. Nat Photonics. 2012;6 :355-359. PMID: 24570762


Hampson M, Tokoglu F, Shen X, Scheinost D, Papademetris X and Constable RT: Intrinsic brain connectivity related to age in young and middle aged adults. PLoS One. 2012;7 (9) :e44067. Epub 2012 Sep 11. PMID: 22984460

Edmiston EE, Wang F, Kalmar JH, Womer FY, Chepenik LG, Pittman B, Gueorguieva R, Hur E, Spencer L, Staib LH, Constable RT, Fulbright RK, Papademetris X and Blumberg HP: Lateral ventricle volume and psychotic features in adolescents and adults with bipolar disorder. Psychiatry Res. 2011 Dec 30;194 (3) :400-2. Epub 2011 Oct 30. PMID: 22041535


Martuzzi R, Ramani R, Qiu M, Shen X, Papademetris X and Constable RT: A whole-brain voxel based measure of intrinsic connectivity contrast reveals local changes in tissue connectivity with anesthetic without a priori assumptions on thresholds or regions of interest. Neuroimage. 2011 Oct 15;58 (4) :1044-50. Epub 2011 Jul 2. PMID: 21763437


Lu C, Chelikani S, Papademetris X, Knisely JP, Milosevic MF, Chen Z, Jaffray DA, Staib LH and Duncan JS: An integrated approach to segmentation and nonrigid registration for application in image-guided pelvic radiotherapy. Med Image Anal. 2011 Oct;15 (5) :772-85. Epub 2011 May 20. PMID: 21646038


Criscione JM, Dobrucki LW, Zhuang ZW, Papademetris X, Simons M, Sinusas AJ and Fahmy TM: Development and application of a multimodal contrast agent for SPECT/CT hybrid imaging. Bioconjug Chem. 2011 Sep 21;22 (9) :1784-92. Epub 2011 Sep 6. PMID: 21851119


Redding B, Choma MA and Cao H: Spatial coherence of random laser emission. Opt Lett. 2011 Sep 1;36 (17) :3404-6. PMID: 21886225


Yang Q, Karpikov A, Toomre D and Duncan JS: 3-D reconstruction of microtubules from multi-angle total internal reflection fluorescence microscopy using Bayesian framework. IEEE Trans Image Process. 2011 Aug;20 (8) :2248-59. Epub 2011 Feb 14. PMID: 21324778


Sahul ZH, Mukherjee R, Song J, McAteer J, Stroud RE, Dione DP, Staib L, Papademetris X, Dobrucki LW, Duncan JS, Spinale FG and Sinusas AJ: Targeted imaging of the spatial and temporal variation of matrix metalloproteinase activity in a porcine model of postinfarct remodeling: relationship to myocardial dysfunction. Circ Cardiovasc Imaging. 2011 Jul;4 (4) :381-91. Epub 2011 Apr 19. PMID: 21505092


Choma MA, Suter MJ, Vakoc BJ, Bouma BE and Tearney GJ: Physiological homology between Drosophila melanogaster and vertebrate cardiovascular systems. Dis Model Mech. 2011 May;4 (3) :411-20. Epub 2010 Dec 23. PMID: 21183476


Joshi A, Scheinost D, Okuda H, Belhachemi D, Murphy I, Staib LH and Papademetris X: Unified framework for development, deployment and robust testing of neuroimaging algorithms. Neuroinformatics. 2011 Mar;9 (1) :69-84. PMID: 21249532


Jou RJ, Jackowski AP, Papademetris X, Rajeevan N, Staib LH and Volkmar FR: Diffusion tensor imaging in autism spectrum disorders: preliminary evidence of abnormal neural connectivity. Aust N Z J Psychiatry. 2011 Feb;45 (2) :153-62. Epub 2010 Dec 6. PMID: 21128874


Suh JW, Scheinost D, Dione DP, Dobrucki LW, Sinusas AJ and Papademetris X: A non-rigid registration method for serial lower extremity hybrid SPECT/CT imaging. Med Image Anal. 2011 Feb;15 (1) :96-111. Epub 2010 Sep 24. PMID: 20869902


Hampson M, Scheinost D, Qiu M, Bhawnani J, Lacadie CM, Leckman JF, Constable RT and Papademetris X: Biofeedback of real-time functional magnetic resonance imaging data from the supplementary motor area reduces functional connectivity to subcortical regions. Brain Connect. 2011;1 (1) :91-8. PMID: 22432958


Chitphakdithai N, Chiang VL and Duncan JS: Non-rigid registration of longitudinal brain tumor treatment MRI. Conf Proc IEEE Eng Med Biol Soc. 2011;2011 :4893-6. PMID: 22255435


Barthel AC, Tagare H and Sigworth FJ: Surface-Constrained 3D Reconstruction in Cryo-EM. Conf Rec Asilomar Conf Signals Syst Comput. 2011; :1026-1030. PMID: 24477184


Bansal S, Wackers FJ, Inzucchi SE, Chyun DA, Davey JA, Staib LH and Young LH: Five-year outcomes in high-risk participants in the Detection of Ischemia in Asymptomatic Diabetics (DIAD) study: a post hoc analysis. Diabetes Care. 2011 Jan;34 (1) :204-9. Epub 2010 Oct 7. PMID: 20929989


Lu C, Chelikani S and Duncan JS: A unified framework for joint segmentation, nonrigid registration and tumor detection: application to MR-guided radiotherapy. Inf Process Med Imaging. 2011;22 :525-37. PMID: 21761683


Pearlman PC, Tagare HD, Lin BA, Sinusas AJ and Duncan JS: Segmentation of 3D RF echocardiography using a multiframe spatio-temporal predictor. Inf Process Med Imaging. 2011;22 :37-48. PMID: 21761644


Jiang Y, Zhuang ZW, Sinusas AJ, Staib LH and Papademetris X: Vessel connectivity using Murray's hypothesis. Med Image Comput Comput Assist Interv. 2011;14 (Pt 3) :528-36. PMID: 22003740


Liang L, Shen H, De Camilli P, Toomre DK and Duncan JS: An expectation maximization based method for subcellular particle tracking using multi-angle TIRF microscopy. Med Image Comput Comput Assist Interv. 2011;14 (Pt 1) :629-36. PMID: 22003671


Ho HP, Wang F, Papademetris X, Blumberg HP and Staib LH: Integrated parcellation and normalization using DTI fasciculography. Med Image Comput Comput Assist Interv. 2011;14 (Pt 2) :33-41. PMID: 21995010


Laufer I, Negishi M, Lacadie CM, Papademetris X and Constable RT: Dissociation between the activity of the right middle frontal gyrus and the middle temporal gyrus in processing semantic priming. PLoS One. 2011;6 (8) :e22368. Epub 2011 Aug 4. PMID: 21829619

Collins M, Curtis A, Artis K, Staib L and Bokhari J: Comparison of two methods for ranking applicants for residency. J Am Coll Radiol. 2010 Dec;7 (12) :961-6. PMID: 21129688


Choma MA, Suter MJ, Vakoc BJ, Bouma BE and Tearney GJ: Heart wall velocimetry and exogenous contrast-based cardiac flow imaging in Drosophila melanogaster using Doppler optical coherence tomography. J Biomed Opt. 2010 Sep-Oct;15 (5) :056020. PMID: 21054114


Tagare HD, Barthel A and Sigworth FJ: An adaptive Expectation-Maximization algorithm with GPU implementation for electron cryomicroscopy. J Struct Biol. 2010 Sep;171 (3) :256-65. Epub 2010 Jun 9. PMID: 20538058


Jiang Y, Zhuang Z, Sinusas AJ and Papademetris X: Vascular Tree Reconstruction by Minimizing A Physiological Functional Cost. Conf Comput Vis Pattern Recognit Workshops. 2010 Jun 13; :178-185. PMID: 21755061


Zhu Y, Papademetris X, Sinusas AJ and Duncan JS: A coupled deformable model for tracking myocardial borders from real-time echocardiography using an incompressibility constraint. Med Image Anal. 2010 Jun;14 (3) :429-48. Epub 2010 Mar 15. PMID: 20350833


Qian X, Tagare HD, Fulbright RK, Long R and Antani S: Optimal embedding for shape indexing in medical image databases. Med Image Anal. 2010 Jun;14 (3) :243-54. Epub 2010 Jan 20. PMID: 20163981


Chitphakdithai N and Duncan JS: PAIRWISE REGISTRATION OF IMAGES WITH MISSING CORRESPONDENCES DUE TO RESECTION. Proc IEEE Int Symp Biomed Imaging. 2010 Apr 14;2010 :1025-1028. PMID: 21804926


Scheinost D, Teisseyre TZ, Distasio M, DeSalvo MN, Papademetris X and Blumenfeld H: New open-source ictal SPECT analysis method implemented in BioImage Suite. Epilepsia. 2010 Apr;51 (4) :703-7. Epub 2010 Jan 13. PMID: 20074234


Zhu Y, Papademetris X, Sinusas AJ and Duncan JS: Segmentation of the left ventricle from cardiac MR images using a subject-specific dynamical model. IEEE Trans Med Imaging. 2010 Mar;29 (3) :669-87. Epub 2009 Sep 29. PMID: 19789107


Delorenzo C, Papademetris X, Staib LH, Vives KP, Spencer DD and Duncan JS: Image-guided intraoperative cortical deformation recovery using game theory: application to neocortical epilepsy surgery. IEEE Trans Med Imaging. 2010 Feb;29 (2) :322-38. PMID: 20129844


Yang Q, Karpikov A, Toomre D and Duncan J: Estimation of 3D geometry of microtubules using multi-angle total internal reflection fluorescence microscopy. Med Image Comput Comput Assist Interv. 2010;13 (Pt 2) :538-45. PMID: 20879357


Liang L, Shen H, De Camilli P and Duncan JS: Tracking clathrin coated pits with a multiple hypothesis based method. Med Image Comput Comput Assist Interv. 2010;13 (Pt 2) :315-22. PMID: 20879330


Pearlman PC, Tagare HD, Sinusas AJ and Duncan JS: 3D radio frequency ultrasound cardiac segmentation using a linear predictor. Med Image Comput Comput Assist Interv. 2010;13 (Pt 1) :502-9. PMID: 20879268


Chitphakdithai N and Duncan JS: Non-rigid registration with missing correspondences in preoperative and postresection brain images. Med Image Comput Comput Assist Interv. 2010;13 (Pt 1) :367-74. PMID: 20879252


Lu C, Chelikani S, Chen Z, Papademetris X, Staib LH and Duncan JS: Integrated segmentation and nonrigid registration for application in prostate image-guided radiotherapy. Med Image Comput Comput Assist Interv. 2010;13 (Pt 1) :53-60. PMID: 20879214

Womer FY, Wang F, Chepenik LG, Kalmar JH, Spencer L, Edmiston E, Pittman BP, Constable RT, Papademetris X and Blumberg HP: Sexually dimorphic features of vermis morphology in bipolar disorder. Bipolar Disord. 2009 Nov;11 (7) :753-8. PMID: 19839998


Munbodh R, Tagare HD, Chen Z, Jaffray DA, Moseley DJ, Knisely JP and Duncan JS: 2D-3D registration for prostate radiation therapy based on a statistical model of transmission images. Med Phys. 2009 Oct;36 (10) :4555-68. PMID: 19928087


Dobrucki LW, Dione DP, Kalinowski L, Dione D, Mendizabal M, Yu J, Papademetris X, Sessa WC and Sinusas AJ: Serial noninvasive targeted imaging of peripheral angiogenesis: validation and application of a semiautomated quantitative approach. J Nucl Med. 2009 Aug;50 (8) :1356-63. Epub 2009 Jul 17. PMID: 19617325


Jiang Y, Edmiston E, Wang F, Blumberg HP, Staib LH and Papademetris X: Shape Comparison Using Perturbing Shape Registration. Proc IEEE Comput Soc Conf Comput Vis Pattern Recognit. 2009 Jun 20;2009 :683-690. PMID: 20386618


Papademetris X, DeLorenzo C, Flossmann S, Neff M, Vives KP, Spencer DD, Staib LH and Duncan JS: From medical image computing to computer-aided intervention: development of a research interface for image-guided navigation. Int J Med Robot. 2009 Jun;5 (2) :147-57. PMID: 19301361


Scheinost D, Blumenfeld H and Papademetris X: AN IMPROVED UNBIASED METHOD FOR DIFFSPECT QUANTIFICATION IN EPILEPSY. Proc IEEE Int Symp Biomed Imaging. 2009 Jun 1;2009 :927-930. PMID: 20706559


Kalmar JH, Wang F, Spencer L, Edmiston E, Lacadie CM, Martin A, Constable RT, Duncan JS, Staib LH, Papademetris X and Blumberg HP: Preliminary evidence for progressive prefrontal abnormalities in adolescents and young adults with bipolar disorder. J Int Neuropsychol Soc. 2009 May;15 (3) :476-81. PMID: 19402934


Chepenik LG, Fredericks C, Papademetris X, Spencer L, Lacadie C, Wang F, Pittman B, Duncan JS, Staib LH, Duman RS, Gelernter J and Blumberg HP: Effects of the brain-derived neurotrophic growth factor val66met variation on hippocampus morphology in bipolar disorder. Neuropsychopharmacology. 2009 Mar;34 (4) :944-51. Epub 2008 Aug 13. PMID: 18704093


Qian X, Brennan MP, Dione DP, Dobrucki WL, Jackowski MP, Breuer CK, Sinusas AJ and Papademetris X: A non-parametric vessel detection method for complex vascular structures. Med Image Anal. 2009 Feb;13 (1) :49-61. Epub 2008 Jun 14. PMID: 18678521


Zhu Y, Papademetris X, Sinusas AJ and Duncan JS: A Dynamical Shape Prior for LV Segmentation from RT3D Echocardiography. Med Image Comput Comput Assist Interv. 2009;5761 :206-213. PMID: 20054422


Ho HP, Papademetris X, Wang F, Blumberg HP and Staib LH: Volumetric shape model for oriented tubular structure from DTI data. Med Image Comput Comput Assist Interv. 2009;12 (Pt 2) :18-25. PMID: 20426091


Suh JW, Scheinost D, Dione DP, Dobrucki LW, Sinusas AJ and Papademetris X: A non-rigid registration method for serial microCT mouse hindlimb images. Med Image Comput Comput Assist Interv. 2009;12 (Pt 1) :688-95. PMID: 20426048


Zhu Y, Papademetris X, Sinusas AJ and Duncan JS: A dynamical shape prior for LV segmentation from RT3D echocardiography. Med Image Comput Comput Assist Interv. 2009;12 (Pt 1) :206-13. PMID: 20425989

Hadjidemetriou S, Toomre D and Duncan J: Motion tracking of the outer tips of microtubules. Med Image Anal. 2008 Dec;12 (6) :689-702. Epub 2008 May 16. PMID: 18571462


Joshi A, Qian X, Dione DP, Bulsara KR, Breuer CK, Sinusas AJ and Papademetris X: Effective visualization of complex vascular structures using a non-parametric vessel detection method. IEEE Trans Vis Comput Graph. 2008 Nov-Dec;14 (6) :1603-10. PMID: 18989016


Joshi A, Scheinost D, Vives KP, Spencer DD, Staib LH and Papademetris X: Novel interaction techniques for neurosurgical planning and stereotactic navigation. IEEE Trans Vis Comput Graph. 2008 Nov-Dec;14 (6) :1587-94. PMID: 18989014


Wang F, Kalmar JH, Edmiston E, Chepenik LG, Bhagwagar Z, Spencer L, Pittman B, Jackowski M, Papademetris X, Constable RT and Blumberg HP: Abnormal corpus callosum integrity in bipolar disorder: a diffusion tensor imaging study. Biol Psychiatry. 2008 Oct 15;64 (8) :730-3. Epub 2008 Jul 11. PMID: 18620337


Munbodh R, Chen Z, Jaffray DA, Moseley DJ, Knisely JP and Duncan JS: Automated 2D-3D registration of portal images and CT data using line-segment enhancement. Med Phys. 2008 Oct;35 (10) :4352-61. PMID: 18975681


Lacadie CM, Fulbright RK, Rajeevan N, Constable RT and Papademetris X: More accurate Talairach coordinates for neuroimaging using non-linear registration. Neuroimage. 2008 Aug 15;42 (2) :717-25. Epub 2008 Apr 30. PMID: 18572418


Wang F, Jackowski M, Kalmar JH, Chepenik LG, Tie K, Qiu M, Gong G, Pittman BP, Jones MM, Shah MP, Spencer L, Papademetris X, Constable RT and Blumberg HP: Abnormal anterior cingulum integrity in bipolar disorder determined through diffusion tensor imaging. Br J Psychiatry. 2008 Aug;193 (2) :126-9. PMID: 18669996


Meltzer JA, Zaveri HP, Goncharova II, Distasio MM, Papademetris X, Spencer SS, Spencer DD and Constable RT: Effects of working memory load on oscillatory power in human intracranial EEG. Cereb Cortex. 2008 Aug;18 (8) :1843-55. Epub 2007 Dec 3. PMID: 18056698


Jackowski AP, Douglas-Palumberi H, Jackowski M, Win L, Schultz RT, Staib LW, Krystal JH and Kaufman J: Corpus callosum in maltreated children with posttraumatic stress disorder: a diffusion tensor imaging study. Psychiatry Res. 2008 Apr 15;162 (3) :256-61. Epub 2008 Mar 4. PMID: 18296031


Taksali SE, Caprio S, Dziura J, Dufour S, Calí AM, Goodman TR, Papademetris X, Burgert TS, Pierpont BM, Savoye M, Shaw M, Seyal AA and Weiss R: High visceral and low abdominal subcutaneous fat stores in the obese adolescent: a determinant of an adverse metabolic phenotype. Diabetes. 2008 Feb;57 (2) :367-71. Epub 2007 Oct 31. PMID: 17977954


Pappu S, Dardik A, Tagare H and Gusberg RJ: Beyond fusiform and saccular: a novel quantitative tortuosity index may help classify aneurysm shape and predict aneurysm rupture potential. Ann Vasc Surg. 2008 Jan;22 (1) :88-97. Epub 2007 Nov 26. PMID: 18023556


Tagare HD, Sigworth F and Barthel A: Fast, adaptive expectation-maximization alignment for Cryo-EM. Med Image Comput Comput Assist Interv. 2008;11 (Pt 2) :855-62. PMID: 18982685


Zhu Y, Papademetris X, Sinusas AJ and Duncan JS: Bidirectional segmentation of three-dimensional cardiac MR images using a subject-specific dynamical model. Med Image Comput Comput Assist Interv. 2008;11 (Pt 2) :450-7. PMID: 18982636


Bathula DR, Tagare HD, Staib LH, Papademetris X, Schultz RT and Duncan JS: Bayesian analysis of fMRI data with ICA based spatial prior. Med Image Comput Comput Assist Interv. 2008;11 (Pt 2) :246-54. PMID: 18982612


Yue Y, Tagare HD, Madsen EL, Frank GR and Hobson MA: Evaluation of a cardiac ultrasound segmentation algorithm using a phantom. Med Image Comput Comput Assist Interv. 2008;11 (Pt 1) :101-9. PMID: 18979737


Zhu Y, Papademetris X, Sinusas A and Duncan JS: Segmentation of Left Ventricle From 3D Cardiac MR Image Sequences Using A Subject-Specific Dynamical Model. Proc IEEE Comput Soc Conf Comput Vis Pattern Recognit. 2008;2008 :1-8. PMID: 20052308

Yan P, Sinusas A and Duncan JS: Boundary element method-based regularization for recovering of LV deformation. Med Image Anal. 2007 Dec;11 (6) :540-54. Epub 2007 May 22. PMID: 17584521


Petersen KF, Dufour S, Savage DB, Bilz S, Solomon G, Yonemitsu S, Cline GW, Befroy D, Zemany L, Kahn BB, Papademetris X, Rothman DL and Shulman GI: The role of skeletal muscle insulin resistance in the pathogenesis of the metabolic syndrome. Proc Natl Acad Sci U S A. 2007 Jul 31;104 (31) :12587-94. Epub 2007 Jul 18. PMID: 17640906


Munbodh R, Chen Z, Jaffray DA, Moseley DJ, Knisely JP and Duncan JS: A frequency-based approach to locate common structure for 2D-3D intensity-based registration of setup images in prostate radiotherapy. Med Phys. 2007 Jul;34 (7) :3005-17. PMID: 17822009


Tao Z and Tagare HD: Tunneling descent for m.a.p. active contours in ultrasound segmentation. Med Image Anal. 2007 Jun;11 (3) :266-81. Epub 2007 May 16. PMID: 17509928


Mounzer R, Shkarin P, Papademetris X, Constable T, Ruddle NH and Fahmy TM: Dynamic imaging of lymphatic vessels and lymph nodes using a bimodal nanoparticulate contrast agent. Lymphat Res Biol. 2007;5 (3) :151-8. PMID: 18035933


Zhu Y, Papademetris X, Sinusas A and Duncan JS: Segmentation of myocardial volumes from real-time 3D echocardiography using an incompressibility constraint. Med Image Comput Comput Assist Interv. 2007;10 (Pt 1) :44-51. PMID: 18051042


DeLorenzo C, Papademetris X, Vives KP, Spencer DD and Duncan JS: A comprehensive system for intraoperative 3D brain deformation recovery. Med Image Comput Comput Assist Interv. 2007;10 (Pt 2) :553-61. PMID: 18044612

Koch KM, Papademetris X, Rothman DL and de Graaf RA: Rapid calculations of susceptibility-induced magnetostatic field perturbations for in vivo magnetic resonance. Phys Med Biol. 2006 Dec 21;51 (24) :6381-402. Epub 2006 Nov 27. PMID: 17148824


Burgert TS, Taksali SE, Dziura J, Goodman TR, Yeckel CW, Papademetris X, Constable RT, Weiss R, Tamborlane WV, Savoye M, Seyal AA and Caprio S: Alanine aminotransferase levels and fatty liver in childhood obesity: associations with insulin resistance, adiponectin, and visceral fat. J Clin Endocrinol Metab. 2006 Nov;91 (11) :4287-94. Epub 2006 Aug 15. PMID: 16912127


Yu W, Yan P, Sinusas AJ, Thiele K and Duncan JS: Towards pointwise motion tracking in echocardiographic image sequences--comparing the reliability of different features for speckle tracking. Med Image Anal. 2006 Aug;10 (4) :495-508. Epub 2006 Mar 30. PMID: 16574465


Chelikani S, Purushothaman K, Knisely J, Chen Z, Nath R, Bansal R and Duncan J: A gradient feature weighted Minimax algorithm for registration of multiple portal images to 3DCT volumes in prostate radiotherapy. Int J Radiat Oncol Biol Phys. 2006 Jun 1;65 (2) :535-47. PMID: 16690436


Munbodh R, Jaffray DA, Moseley DJ, Chen Z, Knisely JP, Cathier P and Duncan JS: Automated 2D-3D registration of a radiograph and a cone beam CT using line-segment enhancement. Med Phys. 2006 May;33 (5) :1398-411. PMID: 16752576


DeLorenzo C, Papademetris X, Wu K, Vives KP, Spencer D and Duncan JS: Nonrigid 3D brain registration using intensity/feature information. Med Image Comput Comput Assist Interv. 2006;9 (Pt 1) :932-9. PMID: 17354980


Staib LH, Jackowski M and Papademetris X: Brain Shape Characterization from Deformation. Proc IEEE Int Symp Biomed Imaging. 2006;3 (1625124) :1140-1143. PMID: 20216923

Blumberg HP, Fredericks C, Wang F, Kalmar JH, Spencer L, Papademetris X, Pittman B, Martin A, Peterson BS, Fulbright RK and Krystal JH: Preliminary evidence for persistent abnormalities in amygdala volumes in adolescents and young adults with bipolar disorder. Bipolar Disord. 2005 Dec;7 (6) :570-6. PMID: 16403182


Jackowski M, Kao CY, Qiu M, Constable RT and Staib LH: White matter tractography by anisotropic wavefront evolution and diffusion tensor imaging. Med Image Anal. 2005 Oct;9 (5) :427-40. PMID: 16040268


Weiss R, Taksali SE, Dufour S, Yeckel CW, Papademetris X, Cline G, Tamborlane WV, Dziura J, Shulman GI and Caprio S: The "obese insulin-sensitive" adolescent: importance of adiponectin and lipid partitioning. J Clin Endocrinol Metab. 2005 Jun;90 (6) :3731-7. Epub 2005 Mar 29. PMID: 15797955


Wang J, Qiu M, Papademetris X and Todd Constable R: Brain tissue segmentation based on corrected gray-scale analysis. Conf Proc IEEE Eng Med Biol Soc. 2005;3 :3027-30. PMID: 17282881


Tao Z and Tagare HD: Tunneling descent level set segmentation of ultrasound images. Inf Process Med Imaging. 2005;19 :750-61. PMID: 17354741


Papademetris X, Shkarin P, Staib LH and Behar KL: Regional whole body fat quantification in mice. Inf Process Med Imaging. 2005;19 :369-80. PMID: 17354710


Papademetris X, Dione DP, Dobrucki LW, Staib LH and Sinusas AJ: Articulated rigid registration for serial lower-limb mouse imaging. Med Image Comput Comput Assist Interv. 2005;8 (Pt 2) :919-26. PMID: 16686048


Jackowski M, Papademetris X, Dobrucki LW, Sinusas AJ and Staib LH: Characterizing vascular connectivity from microCT images. Med Image Comput Comput Assist Interv. 2005;8 (Pt 2) :701-8. PMID: 16686021


Qian X and Tagare HD: Optimal embedding for shape indexing in medical image databases. Med Image Comput Comput Assist Interv. 2005;8 (Pt 2) :377-84. PMID: 16685982


Yan P, Lin N, Sinusas AJ and Duncan JS: A boundary element-based approach to analysis of LV deformation. Med Image Comput Comput Assist Interv. 2005;8 (Pt 1) :778-85. PMID: 16685917


Hadjidemetriou S, Toomre D and Duncan JS: Segmentation and 3D reconstruction of microtubules in total internal reflection fluorescence microscopy (TIRFM). Med Image Comput Comput Assist Interv. 2005;8 (Pt 1) :761-9. PMID: 16685915

Yang J and Duncan JS: 3D image segmentation of deformable objects with joint shape-intensity prior models using level sets. Med Image Anal. 2004 Sep;8 (3) :285-94. PMID: 15450223


Yang J, Staib LH and Duncan JS: Neighbor-constrained segmentation with level set based 3-D deformable models. IEEE Trans Med Imaging. 2004 Aug;23 (8) :940-8. PMID: 15338728


Yang J and Duncan JS: Joint Prior Models of Neighboring Objects for 3D Image Segmentation. Proc IEEE Comput Soc Conf Comput Vis Pattern Recognit. 2004 Jun 27;1 :I314-I319. PMID: 20448825


Kier EL, Staib LH, Davis LM and Bronen RA: MR imaging of the temporal stem: anatomic dissection tractography of the uncinate fasciculus, inferior occipitofrontal fasciculus, and Meyer's loop of the optic radiation. AJNR Am J Neuroradiol. 2004 May;25 (5) :677-91. PMID: 15140705


Kier EL, Staib LH, Davis LM and Bronen RA: Anatomic dissection tractography: a new method for precise MR localization of white matter tracts. AJNR Am J Neuroradiol. 2004 May;25 (5) :670-6. PMID: 15140704


Chelikani S, Gore J and Zubal G: Optimizing Compton camera geometries. Phys Med Biol. 2004 Apr 21;49 (8) :1387-408. PMID: 15152681


Yang J, Tagare HD, Staib LH and Duncan JS: SEGMENTATION OF 3D DEFORMABLE OBJECTS WITH LEVEL SET BASED PRIOR MODELS. Proc IEEE Int Symp Biomed Imaging. 2004 Apr 15;1 :85-88. PMID: 20300448


Yang J, Papademetris X, Staib LH, Schultz RT and Duncan JS: Functional Brain Image Analysis Using Joint Function-Structure Priors. Med Image Comput Comput Assist Interv. 2004 Jan 1;3217 :736-744. PMID: 20543899


Duncan JS, Papademetris X, Yang J, Jackowski M, Zeng X and Staib LH: Geometric strategies for neuroanatomic analysis from MRI. Neuroimage. 2004;23 Suppl 1 :S34-45. PMID: 15501099

Lin N, Yu W and Duncan JS: Combinative multi-scale level set framework for echocardiographic image segmentation. Med Image Anal. 2003 Dec;7 (4) :529-37. PMID: 14561556


Wang YM, Schultz RT, Constable RT and Staib LH: Nonlinear estimation and modeling of fMRI data using spatio-temporal support vector regression. Inf Process Med Imaging. 2003 Jul;18 :647-59. PMID: 15344495


Tao Z, Jaffe CC and Tagare HD: Tunnelling descent: a new algorithm for active contour segmentation of ultrasound images. Inf Process Med Imaging. 2003 Jul;18 :246-57. PMID: 15344462


Yang J, Staib LH and Duncan JS: Neighbor-constrained segmentation with 3D deformable models. Inf Process Med Imaging. 2003 Jul;18 :198-209. PMID: 15344458


Bansal R, Staib LH, Chen Z, Rangarajan A, Knisely J, Nath R and Duncan JS: Entropy-based dual-portal-to-3-DCT registration incorporating pixel correlation. IEEE Trans Med Imaging. 2003 Jan;22 (1) :29-49. PMID: 12703758

Skrinjar O, Nabavi A and Duncan J: Model-driven brain shift compensation. Med Image Anal. 2002 Dec;6 (4) :361-73. PMID: 12494947


Papademetris X, Sinusas AJ, Dione DP, Constable RT and Duncan JS: Estimation of 3-D left ventricular deformation from medical images using biomechanical models. IEEE Trans Med Imaging. 2002 Jul;21 (7) :786-800. PMID: 12374316

Papademetris X, Jackowski AP, Schultz RT, Staib LH and Duncan JS: Integrated Intensity and Point-Feature Nonrigid Registration. Med Image Comput Comput Assist Interv. 2001 Sep 2;3216 (2004) :763-770. PMID: 20473359

Bremner JD, Bronen RA, De Erasquin G, Vermetten E, Staib LH, Ng CK, Soufer R, Charney DS and Innis RB: Development and Reliability of a Method for Using Magnetic Resonance Imaging for the Definition of Regions of Interest for Positron Emission Tomography. Clin Positron Imaging. 1998 Jun;1 (3) :145-159. PMID: 14516589