IPA Group Publications

Scheinost D, Lacadie C, Vohr BR, Schneider KC, Papademetris X, Constable RT, Ment LR: Cerebral Lateralization is Protective in the Very Prematurely Born. Cereb Cortex. 2015 Jul; 2014 Jan 22. PMID: 24451659

Tagare HD, Kucukelbir A, Sigworth FJ, Wang H, Rao M: Directly reconstructing principal components of heterogeneous particles from cryo-EM images. J Struct Biol. 2015 Jun 4; 2015 Jun 4. PMID: 26049077

Tam LK, Galiana G, Stockmann JP, Tagare H, Peters DC, Constable RT: Pseudo-random center placement O-space imaging for improved incoherence compressed sensing parallel MRI. Magn Reson Med. 2015 Jun; 2014 Jul 17. PMID: 25042143

Jonas SM, Deserno TM, Buhimschi CS, Makin J, Choma MA, Buhimschi IA: Smartphone-based diagnostic for preeclampsia: an mHealth solution for administering the Congo Red Dot (CRD) test in settings with limited resources. J Am Med Inform Assoc. 2015 May 29; 2015 May 29. PMID: 26026158

Dvornek NC, Sigworth FJ, Tagare HD: SubspaceEM: A fast maximum-a-posteriori algorithm for cryo-EM single particle reconstruction. J Struct Biol. 2015 May; 2015 Mar 31. PMID: 25839831

Najt P, Wang F, Spencer L, Johnston JA, Cox Lippard ET, Pittman BP, Lacadie C, Staib LH, Papademetris X, Blumberg HP: Anterior Cortical Development During Adolescence in Bipolar Disorder. Biol Psychiatry. 2015 Apr 6; 2015 Apr 6. PMID: 26033826

Scheinost D, Finn ES, Tokoglu F, Shen X, Papademetris X, Hampson M, Constable RT: Sex differences in normal age trajectories of functional brain networks. Hum Brain Mapp. 2015 Apr; 2014 Dec 18. PMID: 25523617

Li S, Chan C, Stockmann JP, Tagare H, Adluru G, Tam LK, Galiana G, Constable RT, Kozerke S, Peters DC: Algebraic reconstruction technique for parallel imaging reconstruction of undersampled radial data: application to cardiac cine. Magn Reson Med. 2015 Apr; 2014 Apr 18. PMID: 24753213

Ratner ES, Staib LH, Cross SN, Raji R, Schwartz PE, McCarthy SM: The clinical impact of gynecologic MRI. AJR Am J Roentgenol. 2015 Mar. PMID: 25714302

Huang BK, Choma MA: Microscale imaging of cilia-driven fluid flow. Cell Mol Life Sci. 2015 Mar; 2014 Nov 23. PMID: 25417211

Huang BK, Gamm UA, Jonas S, Khokha MK, Choma MA: Quantitative optical coherence tomography imaging of intermediate flow defect phenotypes in ciliary physiology and pathophysiology. J Biomed Opt. 2015 Mar 1. PMID: 25751026

Redding B, Cerjan A, Huang X, Lee ML, Stone AD, Choma MA, Cao H: Low spatial coherence electrically pumped semiconductor laser for speckle-free full-field imaging. Proc Natl Acad Sci U S A. 2015 Feb 3; 2015 Jan 20. PMID: 25605946

Venkataraman A, Duncan JS, Yang DY, Pelphrey KA: An unbiased Bayesian approach to functional connectomics implicates social-communication networks in autism. Neuroimage Clin. 2015; 2015 May 1. PMID: 26106561

Cosgrove KP, Wang S, Kim SJ, McGovern E, Nabulsi N, Gao H, Labaree D, Tagare HD, Sullivan JM, Morris ED: Sex differences in the brain's dopamine signature of cigarette smoking. J Neurosci. 2014 Dec 10. PMID: 25505336

Lee HW, Arora J, Papademetris X, Tokoglu F, Negishi M, Scheinost D, Farooque P, Blumenfeld H, Spencer DD, Constable RT: Altered functional connectivity in seizure onset zones revealed by fMRI intrinsic connectivity. Neurology. 2014 Dec 9; 2014 Nov 12. PMID: 25391304

Cheng DW, Ersahin D, Staib LH, Della Latta D, Giorgetti A, d'Errico F: Using SUV as a guide to 18F-FDG dose reduction. J Nucl Med. 2014 Dec; 2014 Nov 13. PMID: 25453048

Finn ES, Shen X, Holahan JM, Scheinost D, Lacadie C, Papademetris X, Shaywitz SE, Shaywitz BA, Constable RT: Disruption of functional networks in dyslexia: a whole-brain, data-driven analysis of connectivity. Biol Psychiatry. 2014 Sep 1; 2013 Oct 11. PMID: 24124929

Nández R, Balkin DM, Messa M, Liang L, Paradise S, Czapla H, Hein MY, Duncan JS, Mann M, De Camilli P: A role of OCRL in clathrin-coated pit dynamics and uncoating revealed by studies of Lowe syndrome cells. Elife. 2014 Aug 8; 2014 Aug 8. PMID: 25107275

Kelley BJ, Harel NY, Kim CY, Papademetris X, Coman D, Wang X, Hasan O, Kaufman A, Globinsky R, Staib LH, Cafferty WB, Hyder F, Strittmatter SM: Diffusion tensor imaging as a predictor of locomotor function after experimental spinal cord injury and recovery. J Neurotrauma. 2014 Aug 1; 2014 Jul 8. PMID: 24779685

Scheinost D, Papademetris X, Constable RT: The impact of image smoothness on intrinsic functional connectivity and head motion confounds. Neuroimage. 2014 Jul 15; 2014 Mar 20. PMID: 24657356

Cannon TD, Sun F, McEwen SJ, Papademetris X, He G, van Erp TG, Jacobson A, Bearden CE, Walker E, Hu X, Zhou L, Seidman LJ, Thermenos HW, Cornblatt B, Olvet DM, Perkins D, Belger A, Cadenhead K, Tsuang M, Mirzakhanian H, Addington J, Frayne R, Woods SW, McGlashan TH, Constable RT, Qiu M, Mathalon DH, Thompson P, Toga AW: Reliability of neuroanatomical measurements in a multisite longitudinal study of youth at risk for psychosis. Hum Brain Mapp. 2014 May; 2013 Aug 24. PMID: 23982962

Chenouard N, Smal I, de Chaumont F, Maška M, Sbalzarini IF, Gong Y, Cardinale J, Carthel C, Coraluppi S, Winter M, Cohen AR, Godinez WJ, Rohr K, Kalaidzidis Y, Liang L, Duncan J, Shen H, Xu Y, Magnusson KE, Jaldén J, Blau HM, Paul-Gilloteaux P, Roudot P, Kervrann C, Waharte F, Tinevez JY, Shorte SL, Willemse J, Celler K, van Wezel GP, Dan HW, Tsai YS, Ortiz de Solórzano C, Olivo-Marin JC, Meijering E: Objective comparison of particle tracking methods. Nat Methods. 2014 Mar; 2014 Jan 19. PMID: 24441936

Huang X, Dione DP, Compas CB, Papademetris X, Lin BA, Bregasi A, Sinusas AJ, Staib LH, Duncan JS: Contour tracking in echocardiographic sequences via sparse representation and dictionary learning. Med Image Anal. 2014 Feb; 2013 Nov 6. PMID: 24292554

Kucukelbir A, Sigworth FJ, Tagare HD: Quantifying the local resolution of cryo-EM density maps. Nat Methods. 2014 Jan; 2013 Nov 10. PMID: 24213166

Scheinost D, Shen X, Finn E, Sinha R, Constable RT, Papademetris X: Coupled Intrinsic Connectivity Distribution analysis: a method for exploratory connectivity analysis of paired FMRI data. PLoS One. 2014; 2014 Mar 27. PMID: 24676034

Jonas S, Zhou E, Deniz E, Huang B, Chandrasekera K, Bhattacharya D, Wu Y, Fan R, Deserno TM, Khokha MK, Choma MA: A novel approach to quantifying ciliary physiology: microfluidic mixing driven by a ciliated biological surface. Lab Chip. 2013 Nov 7. PMID: 23970350

Garrison KA, Scheinost D, Worhunsky PD, Elwafi HM, Thornhill TA 4th, Thompson E, Saron C, Desbordes G, Kober H, Hampson M, Gray JR, Constable RT, Papademetris X, Brewer JA: Real-time fMRI links subjective experience with brain activity during focused attention. Neuroimage. 2013 Nov 1; 2013 May 17. PMID: 23684866

Zhang Z, Friedman D, Dione DP, Lin BA, Duncan JS, Sinusas AJ, Sampath S: Assessment of left ventricular 2D flow pathlines during early diastole using spatial modulation of magnetization with polarity alternating velocity encoding: a study in normal volunteers and canine animals with myocardial infarction. Magn Reson Med. 2013 Sep; 2012 Oct 8. PMID: 23044637

Scheinost D, Hampson M, Qiu M, Bhawnani J, Constable RT, Papademetris X: A graphics processing unit accelerated motion correction algorithm and modular system for real-time fMRI. Neuroinformatics. 2013 Jul. PMID: 23319241

Jaba IM, Zhuang ZW, Li N, Jiang Y, Martin KA, Sinusas AJ, Papademetris X, Simons M, Sessa WC, Young LH, Tirziu D: NO triggers RGS4 degradation to coordinate angiogenesis and cardiomyocyte growth. J Clin Invest. 2013 Apr. PMID: 23454748

Constable RT, Scheinost D, Finn ES, Shen X, Hampson M, Winstanley FS, Spencer DD, Papademetris X: Potential use and challenges of functional connectivity mapping in intractable epilepsy. Front Neurol. 2013; 2013 May 22. PMID: 23734143

Onofrey JA, Staib LH, Papademetris X: Learning nonrigid deformations for constrained multi-modal image registration. Med Image Comput Comput Assist Interv. 2013. PMID: 24505758

Huang X, Dione DP, Lin BA, Bregasi A, Sinusas AJ, Duncan JS: Segmentation of 4D echocardiography using stochastic online dictionary learning. Med Image Comput Comput Assist Interv. 2013. PMID: 24505744

Constable RT, Vohr BR, Scheinost D, Benjamin JR, Fulbright RK, Lacadie C, Schneider KC, Katz KH, Zhang H, Papademetris X, Ment LR: A left cerebellar pathway mediates language in prematurely-born young adults. Neuroimage. 2013 Jan 1; 2012 Sep 12. PMID: 22982585

Onofrey JA, Staib LH, Papademetris X: FAST NONRIGID IMAGE REGISTRATION USING STATISTICAL DEFORMATION MODELS LEARNED FROM RICHLY-ANNOTATED DATA. Proc IEEE Int Symp Biomed Imaging. 2013. PMID: 25000401

DeLorenzo C, Papademetris X, Staib LH, Vives KP, Spencer DD, Duncan JS: Volumetric intraoperative brain deformation compensation: model development and phantom validation. IEEE Trans Med Imaging. 2012 Aug; 2012 May 2. PMID: 22562728

Deniz E, Jonas S, Khokha M, Choma MA: Endogenous contrast blood flow imaging in embryonic hearts using hemoglobin contrast subtraction angiography. Opt Lett. 2012 Jul 15. PMID: 22825198

Kucukelbir A, Sigworth FJ, Tagare HD: A Bayesian adaptive basis algorithm for single particle reconstruction. J Struct Biol. 2012 Jul; 2012 May 1. PMID: 22564910

Silva CT, Naveed N, Bokhari S, Baker KE, Staib LH, Ibrahim SM, Muchantef K, Goodman TR: Early assessment of the efficacy of digital infrared thermal imaging in pediatric extremity trauma. Emerg Radiol. 2012 Jun; 2012 Feb 24. PMID: 22362422

Lu C, Chelikani S, Jaffray DA, Milosevic MF, Staib LH, Duncan JS: Simultaneous nonrigid registration, segmentation, and tumor detection in MRI guided cervical cancer radiation therapy. IEEE Trans Med Imaging. 2012 Jun; 2012 Feb 6. PMID: 22328178

Duque A, Coman D, Carlyle BC, Bordner KA, George ED, Papademetris X, Hyder F, Simen AA: Neuroanatomical changes in a mouse model of early life neglect. Brain Struct Funct. 2012 Apr; 2011 Oct 8. PMID: 21984312

Tandon S, Wackers FJ, Inzucchi SE, Bansal S, Staib LH, Chyun DA, Davey JA, Young LH, DIAD Investigators: Gender-based divergence of cardiovascular outcomes in asymptomatic patients with type 2 diabetes: results from the DIAD study. Diab Vasc Dis Res. 2012 Apr; 2012 Jan 6. PMID: 22228772

Chen MK, Yasrebi M, Samii J, Staib LH, Doddamane I, Cheng DW: The utility of I-123 pretherapy scan in I-131 radioiodine therapy for thyroid cancer. Thyroid. 2012 Mar; 2012 Feb 2. PMID: 22300251

Yuan S, Li J, Diener DR, Choma MA, Rosenbaum JL, Sun Z: Target-of-rapamycin complex 1 (Torc1) signaling modulates cilia size and function through protein synthesis regulation. Proc Natl Acad Sci U S A. 2012 Feb 7; 2012 Jan 23. PMID: 22308353

Ho HP, Wang F, Papademetris X, Blumberg HP, Staib LH: Fasciculography: robust prior-free real-time normalized volumetric neural tract parcellation. IEEE Trans Med Imaging. 2012 Feb; 2011 Sep 12. PMID: 21914568

Hampson M, Stoica T, Saksa J, Scheinost D, Qiu M, Bhawnani J, Pittenger C, Papademetris X, Constable T: Real-time fMRI biofeedback targeting the orbitofrontal cortex for contamination anxiety. J Vis Exp. 2012 Jan 20; 2012 Jan 20. PMID: 22297729

Huang X, Dione DP, Compas CB, Papademetris X, Lin BA, Sinusas AJ, Duncan JS: A dynamical appearance model based on multiscale sparse representation: segmentation of the left ventricle from 4D echocardiography. Med Image Comput Comput Assist Interv. 2012. PMID: 23286114

Redding B, Choma MA, Cao H: Speckle-free laser imaging using random laser illumination. Nat Photonics. 2012. PMID: 24570762

Hampson M, Tokoglu F, Shen X, Scheinost D, Papademetris X, Constable RT: Intrinsic brain connectivity related to age in young and middle aged adults. PLoS One. 2012; 2012 Sep 11. PMID: 22984460

Edmiston EE, Wang F, Kalmar JH, Womer FY, Chepenik LG, Pittman B, Gueorguieva R, Hur E, Spencer L, Staib LH, Constable RT, Fulbright RK, Papademetris X, Blumberg HP: Lateral ventricle volume and psychotic features in adolescents and adults with bipolar disorder. Psychiatry Res. 2011 Dec 30; 2011 Oct 30. PMID: 22041535

Martuzzi R, Ramani R, Qiu M, Shen X, Papademetris X, Constable RT: A whole-brain voxel based measure of intrinsic connectivity contrast reveals local changes in tissue connectivity with anesthetic without a priori assumptions on thresholds or regions of interest. Neuroimage. 2011 Oct 15; 2011 Jul 2. PMID: 21763437

Lu C, Chelikani S, Papademetris X, Knisely JP, Milosevic MF, Chen Z, Jaffray DA, Staib LH, Duncan JS: An integrated approach to segmentation and nonrigid registration for application in image-guided pelvic radiotherapy. Med Image Anal. 2011 Oct; 2011 May 20. PMID: 21646038

Criscione JM, Dobrucki LW, Zhuang ZW, Papademetris X, Simons M, Sinusas AJ, Fahmy TM: Development and application of a multimodal contrast agent for SPECT/CT hybrid imaging. Bioconjug Chem. 2011 Sep 21; 2011 Sep 6. PMID: 21851119

Redding B, Choma MA, Cao H: Spatial coherence of random laser emission. Opt Lett. 2011 Sep 1. PMID: 21886225

Yang Q, Karpikov A, Toomre D, Duncan JS: 3-D reconstruction of microtubules from multi-angle total internal reflection fluorescence microscopy using Bayesian framework. IEEE Trans Image Process. 2011 Aug; 2011 Feb 14. PMID: 21324778

Sahul ZH, Mukherjee R, Song J, McAteer J, Stroud RE, Dione DP, Staib L, Papademetris X, Dobrucki LW, Duncan JS, Spinale FG, Sinusas AJ: Targeted imaging of the spatial and temporal variation of matrix metalloproteinase activity in a porcine model of postinfarct remodeling: relationship to myocardial dysfunction. Circ Cardiovasc Imaging. 2011 Jul; 2011 Apr 19. PMID: 21505092

Choma MA, Suter MJ, Vakoc BJ, Bouma BE, Tearney GJ: Physiological homology between Drosophila melanogaster and vertebrate cardiovascular systems. Dis Model Mech. 2011 May; 2010 Dec 23. PMID: 21183476

Joshi A, Scheinost D, Okuda H, Belhachemi D, Murphy I, Staib LH, Papademetris X: Unified framework for development, deployment and robust testing of neuroimaging algorithms. Neuroinformatics. 2011 Mar. PMID: 21249532

Jou RJ, Jackowski AP, Papademetris X, Rajeevan N, Staib LH, Volkmar FR: Diffusion tensor imaging in autism spectrum disorders: preliminary evidence of abnormal neural connectivity. Aust N Z J Psychiatry. 2011 Feb; 2010 Dec 6. PMID: 21128874

Suh JW, Scheinost D, Dione DP, Dobrucki LW, Sinusas AJ, Papademetris X: A non-rigid registration method for serial lower extremity hybrid SPECT/CT imaging. Med Image Anal. 2011 Feb; 2010 Sep 24. PMID: 20869902

Hampson M, Scheinost D, Qiu M, Bhawnani J, Lacadie CM, Leckman JF, Constable RT, Papademetris X: Biofeedback of real-time functional magnetic resonance imaging data from the supplementary motor area reduces functional connectivity to subcortical regions. Brain Connect. 2011. PMID: 22432958

Chitphakdithai N, Chiang VL, Duncan JS: Non-rigid registration of longitudinal brain tumor treatment MRI. Conf Proc IEEE Eng Med Biol Soc. 2011. PMID: 22255435

Barthel AC, Tagare H, Sigworth FJ: Surface-Constrained 3D Reconstruction in Cryo-EM. Conf Rec Asilomar Conf Signals Syst Comput. 2011. PMID: 24477184

Bansal S, Wackers FJ, Inzucchi SE, Chyun DA, Davey JA, Staib LH, Young LH, DIAD Study Investigators: Five-year outcomes in high-risk participants in the Detection of Ischemia in Asymptomatic Diabetics (DIAD) study: a post hoc analysis. Diabetes Care. 2011 Jan; 2010 Oct 7. PMID: 20929989

Lu C, Chelikani S, Duncan JS: A unified framework for joint segmentation, nonrigid registration and tumor detection: application to MR-guided radiotherapy. Inf Process Med Imaging. 2011. PMID: 21761683

Pearlman PC, Tagare HD, Lin BA, Sinusas AJ, Duncan JS: Segmentation of 3D RF echocardiography using a multiframe spatio-temporal predictor. Inf Process Med Imaging. 2011. PMID: 21761644

Jiang Y, Zhuang ZW, Sinusas AJ, Staib LH, Papademetris X: Vessel connectivity using Murray's hypothesis. Med Image Comput Comput Assist Interv. 2011. PMID: 22003740

Liang L, Shen H, De Camilli P, Toomre DK, Duncan JS: An expectation maximization based method for subcellular particle tracking using multi-angle TIRF microscopy. Med Image Comput Comput Assist Interv. 2011. PMID: 22003671

Ho HP, Wang F, Papademetris X, Blumberg HP, Staib LH: Integrated parcellation and normalization using DTI fasciculography. Med Image Comput Comput Assist Interv. 2011. PMID: 21995010

Laufer I, Negishi M, Lacadie CM, Papademetris X, Constable RT: Dissociation between the activity of the right middle frontal gyrus and the middle temporal gyrus in processing semantic priming. PLoS One. 2011; 2011 Aug 4. PMID: 21829619

Collins M, Curtis A, Artis K, Staib L, Bokhari J: Comparison of two methods for ranking applicants for residency. J Am Coll Radiol. 2010 Dec. PMID: 21129688

Choma MA, Suter MJ, Vakoc BJ, Bouma BE, Tearney GJ: Heart wall velocimetry and exogenous contrast-based cardiac flow imaging in Drosophila melanogaster using Doppler optical coherence tomography. J Biomed Opt. 2010 Sep-Oct. PMID: 21054114

Tagare HD, Barthel A, Sigworth FJ: An adaptive Expectation-Maximization algorithm with GPU implementation for electron cryomicroscopy. J Struct Biol. 2010 Sep; 2010 Jun 9. PMID: 20538058

Jiang Y, Zhuang Z, Sinusas AJ, Papademetris X: Vascular Tree Reconstruction by Minimizing A Physiological Functional Cost. Conf Comput Vis Pattern Recognit Workshops. 2010 Jun 13. PMID: 21755061

Zhu Y, Papademetris X, Sinusas AJ, Duncan JS: A coupled deformable model for tracking myocardial borders from real-time echocardiography using an incompressibility constraint. Med Image Anal. 2010 Jun; 2010 Mar 15. PMID: 20350833

Qian X, Tagare HD, Fulbright RK, Long R, Antani S: Optimal embedding for shape indexing in medical image databases. Med Image Anal. 2010 Jun; 2010 Jan 20. PMID: 20163981

Chitphakdithai N, Duncan JS: PAIRWISE REGISTRATION OF IMAGES WITH MISSING CORRESPONDENCES DUE TO RESECTION. Proc IEEE Int Symp Biomed Imaging. 2010 Apr 14. PMID: 21804926

Scheinost D, Teisseyre TZ, Distasio M, DeSalvo MN, Papademetris X, Blumenfeld H: New open-source ictal SPECT analysis method implemented in BioImage Suite. Epilepsia. 2010 Apr; 2010 Jan 13. PMID: 20074234

Zhu Y, Papademetris X, Sinusas AJ, Duncan JS: Segmentation of the left ventricle from cardiac MR images using a subject-specific dynamical model. IEEE Trans Med Imaging. 2010 Mar; 2009 Sep 29. PMID: 19789107

Delorenzo C, Papademetris X, Staib LH, Vives KP, Spencer DD, Duncan JS: Image-guided intraoperative cortical deformation recovery using game theory: application to neocortical epilepsy surgery. IEEE Trans Med Imaging. 2010 Feb. PMID: 20129844

Yang Q, Karpikov A, Toomre D, Duncan J: Estimation of 3D geometry of microtubules using multi-angle total internal reflection fluorescence microscopy. Med Image Comput Comput Assist Interv. 2010. PMID: 20879357

Liang L, Shen H, De Camilli P, Duncan JS: Tracking clathrin coated pits with a multiple hypothesis based method. Med Image Comput Comput Assist Interv. 2010. PMID: 20879330

Pearlman PC, Tagare HD, Sinusas AJ, Duncan JS: 3D radio frequency ultrasound cardiac segmentation using a linear predictor. Med Image Comput Comput Assist Interv. 2010. PMID: 20879268

Chitphakdithai N, Duncan JS: Non-rigid registration with missing correspondences in preoperative and postresection brain images. Med Image Comput Comput Assist Interv. 2010. PMID: 20879252

Lu C, Chelikani S, Chen Z, Papademetris X, Staib LH, Duncan JS: Integrated segmentation and nonrigid registration for application in prostate image-guided radiotherapy. Med Image Comput Comput Assist Interv. 2010. PMID: 20879214

Womer FY, Wang F, Chepenik LG, Kalmar JH, Spencer L, Edmiston E, Pittman BP, Constable RT, Papademetris X, Blumberg HP: Sexually dimorphic features of vermis morphology in bipolar disorder. Bipolar Disord. 2009 Nov. PMID: 19839998

Munbodh R, Tagare HD, Chen Z, Jaffray DA, Moseley DJ, Knisely JP, Duncan JS: 2D-3D registration for prostate radiation therapy based on a statistical model of transmission images. Med Phys. 2009 Oct. PMID: 19928087

Dobrucki LW, Dione DP, Kalinowski L, Dione D, Mendizabal M, Yu J, Papademetris X, Sessa WC, Sinusas AJ: Serial noninvasive targeted imaging of peripheral angiogenesis: validation and application of a semiautomated quantitative approach. J Nucl Med. 2009 Aug; 2009 Jul 17. PMID: 19617325

Jiang Y, Edmiston E, Wang F, Blumberg HP, Staib LH, Papademetris X: Shape Comparison Using Perturbing Shape Registration. Proc IEEE Comput Soc Conf Comput Vis Pattern Recognit. 2009 Jun 20. PMID: 20386618

Papademetris X, DeLorenzo C, Flossmann S, Neff M, Vives KP, Spencer DD, Staib LH, Duncan JS: From medical image computing to computer-aided intervention: development of a research interface for image-guided navigation. Int J Med Robot. 2009 Jun. PMID: 19301361

Scheinost D, Blumenfeld H, Papademetris X: AN IMPROVED UNBIASED METHOD FOR DIFFSPECT QUANTIFICATION IN EPILEPSY. Proc IEEE Int Symp Biomed Imaging. 2009 Jun 1. PMID: 20706559

Kalmar JH, Wang F, Spencer L, Edmiston E, Lacadie CM, Martin A, Constable RT, Duncan JS, Staib LH, Papademetris X, Blumberg HP: Preliminary evidence for progressive prefrontal abnormalities in adolescents and young adults with bipolar disorder. J Int Neuropsychol Soc. 2009 May. PMID: 19402934

Chepenik LG, Fredericks C, Papademetris X, Spencer L, Lacadie C, Wang F, Pittman B, Duncan JS, Staib LH, Duman RS, Gelernter J, Blumberg HP: Effects of the brain-derived neurotrophic growth factor val66met variation on hippocampus morphology in bipolar disorder. Neuropsychopharmacology. 2009 Mar; 2008 Aug 13. PMID: 18704093

Qian X, Brennan MP, Dione DP, Dobrucki WL, Jackowski MP, Breuer CK, Sinusas AJ, Papademetris X: A non-parametric vessel detection method for complex vascular structures. Med Image Anal. 2009 Feb; 2008 Jun 14. PMID: 18678521

Zhu Y, Papademetris X, Sinusas AJ, Duncan JS: A Dynamical Shape Prior for LV Segmentation from RT3D Echocardiography. Med Image Comput Comput Assist Interv. 2009. PMID: 20054422

Ho HP, Papademetris X, Wang F, Blumberg HP, Staib LH: Volumetric shape model for oriented tubular structure from DTI data. Med Image Comput Comput Assist Interv. 2009. PMID: 20426091

Suh JW, Scheinost D, Dione DP, Dobrucki LW, Sinusas AJ, Papademetris X: A non-rigid registration method for serial microCT mouse hindlimb images. Med Image Comput Comput Assist Interv. 2009. PMID: 20426048

Zhu Y, Papademetris X, Sinusas AJ, Duncan JS: A dynamical shape prior for LV segmentation from RT3D echocardiography. Med Image Comput Comput Assist Interv. 2009. PMID: 20425989

Hadjidemetriou S, Toomre D, Duncan J: Motion tracking of the outer tips of microtubules. Med Image Anal. 2008 Dec; 2008 May 16. PMID: 18571462

Joshi A, Qian X, Dione DP, Bulsara KR, Breuer CK, Sinusas AJ, Papademetris X: Effective visualization of complex vascular structures using a non-parametric vessel detection method. IEEE Trans Vis Comput Graph. 2008 Nov-Dec. PMID: 18989016

Joshi A, Scheinost D, Vives KP, Spencer DD, Staib LH, Papademetris X: Novel interaction techniques for neurosurgical planning and stereotactic navigation. IEEE Trans Vis Comput Graph. 2008 Nov-Dec. PMID: 18989014

Wang F, Kalmar JH, Edmiston E, Chepenik LG, Bhagwagar Z, Spencer L, Pittman B, Jackowski M, Papademetris X, Constable RT, Blumberg HP: Abnormal corpus callosum integrity in bipolar disorder: a diffusion tensor imaging study. Biol Psychiatry. 2008 Oct 15; 2008 Jul 11. PMID: 18620337

Munbodh R, Chen Z, Jaffray DA, Moseley DJ, Knisely JP, Duncan JS: Automated 2D-3D registration of portal images and CT data using line-segment enhancement. Med Phys. 2008 Oct. PMID: 18975681

Lacadie CM, Fulbright RK, Rajeevan N, Constable RT, Papademetris X: More accurate Talairach coordinates for neuroimaging using non-linear registration. Neuroimage. 2008 Aug 15; 2008 Apr 30. PMID: 18572418

Wang F, Jackowski M, Kalmar JH, Chepenik LG, Tie K, Qiu M, Gong G, Pittman BP, Jones MM, Shah MP, Spencer L, Papademetris X, Constable RT, Blumberg HP: Abnormal anterior cingulum integrity in bipolar disorder determined through diffusion tensor imaging. Br J Psychiatry. 2008 Aug. PMID: 18669996

Meltzer JA, Zaveri HP, Goncharova II, Distasio MM, Papademetris X, Spencer SS, Spencer DD, Constable RT: Effects of working memory load on oscillatory power in human intracranial EEG. Cereb Cortex. 2008 Aug; 2007 Dec 3. PMID: 18056698

Jackowski AP, Douglas-Palumberi H, Jackowski M, Win L, Schultz RT, Staib LW, Krystal JH, Kaufman J: Corpus callosum in maltreated children with posttraumatic stress disorder: a diffusion tensor imaging study. Psychiatry Res. 2008 Apr 15; 2008 Mar 4. PMID: 18296031

Taksali SE, Caprio S, Dziura J, Dufour S, Calí AM, Goodman TR, Papademetris X, Burgert TS, Pierpont BM, Savoye M, Shaw M, Seyal AA, Weiss R: High visceral and low abdominal subcutaneous fat stores in the obese adolescent: a determinant of an adverse metabolic phenotype. Diabetes. 2008 Feb; 2007 Oct 31. PMID: 17977954

Pappu S, Dardik A, Tagare H, Gusberg RJ: Beyond fusiform and saccular: a novel quantitative tortuosity index may help classify aneurysm shape and predict aneurysm rupture potential. Ann Vasc Surg. 2008 Jan; 2007 Nov 26. PMID: 18023556

Tagare HD, Sigworth F, Barthel A: Fast, adaptive expectation-maximization alignment for Cryo-EM. Med Image Comput Comput Assist Interv. 2008. PMID: 18982685

Zhu Y, Papademetris X, Sinusas AJ, Duncan JS: Bidirectional segmentation of three-dimensional cardiac MR images using a subject-specific dynamical model. Med Image Comput Comput Assist Interv. 2008. PMID: 18982636

Bathula DR, Tagare HD, Staib LH, Papademetris X, Schultz RT, Duncan JS: Bayesian analysis of fMRI data with ICA based spatial prior. Med Image Comput Comput Assist Interv. 2008. PMID: 18982612

Yue Y, Tagare HD, Madsen EL, Frank GR, Hobson MA: Evaluation of a cardiac ultrasound segmentation algorithm using a phantom. Med Image Comput Comput Assist Interv. 2008. PMID: 18979737

Zhu Y, Papademetris X, Sinusas A, Duncan JS: Segmentation of Left Ventricle From 3D Cardiac MR Image Sequences Using A Subject-Specific Dynamical Model. Proc IEEE Comput Soc Conf Comput Vis Pattern Recognit. 2008. PMID: 20052308

Yan P, Sinusas A, Duncan JS: Boundary element method-based regularization for recovering of LV deformation. Med Image Anal. 2007 Dec; 2007 May 22. PMID: 17584521

Petersen KF, Dufour S, Savage DB, Bilz S, Solomon G, Yonemitsu S, Cline GW, Befroy D, Zemany L, Kahn BB, Papademetris X, Rothman DL, Shulman GI: The role of skeletal muscle insulin resistance in the pathogenesis of the metabolic syndrome. Proc Natl Acad Sci U S A. 2007 Jul 31; 2007 Jul 18. PMID: 17640906

Munbodh R, Chen Z, Jaffray DA, Moseley DJ, Knisely JP, Duncan JS: A frequency-based approach to locate common structure for 2D-3D intensity-based registration of setup images in prostate radiotherapy. Med Phys. 2007 Jul. PMID: 17822009

Tao Z, Tagare HD: Tunneling descent for m.a.p. active contours in ultrasound segmentation. Med Image Anal. 2007 Jun; 2007 May 16. PMID: 17509928

Mounzer R, Shkarin P, Papademetris X, Constable T, Ruddle NH, Fahmy TM: Dynamic imaging of lymphatic vessels and lymph nodes using a bimodal nanoparticulate contrast agent. Lymphat Res Biol. 2007. PMID: 18035933

Zhu Y, Papademetris X, Sinusas A, Duncan JS: Segmentation of myocardial volumes from real-time 3D echocardiography using an incompressibility constraint. Med Image Comput Comput Assist Interv. 2007. PMID: 18051042

DeLorenzo C, Papademetris X, Vives KP, Spencer DD, Duncan JS: A comprehensive system for intraoperative 3D brain deformation recovery. Med Image Comput Comput Assist Interv. 2007. PMID: 18044612

Koch KM, Papademetris X, Rothman DL, de Graaf RA: Rapid calculations of susceptibility-induced magnetostatic field perturbations for in vivo magnetic resonance. Phys Med Biol. 2006 Dec 21; 2006 Nov 27. PMID: 17148824

Burgert TS, Taksali SE, Dziura J, Goodman TR, Yeckel CW, Papademetris X, Constable RT, Weiss R, Tamborlane WV, Savoye M, Seyal AA, Caprio S: Alanine aminotransferase levels and fatty liver in childhood obesity: associations with insulin resistance, adiponectin, and visceral fat. J Clin Endocrinol Metab. 2006 Nov; 2006 Aug 15. PMID: 16912127

Yu W, Yan P, Sinusas AJ, Thiele K, Duncan JS: Towards pointwise motion tracking in echocardiographic image sequences--comparing the reliability of different features for speckle tracking. Med Image Anal. 2006 Aug; 2006 Mar 30. PMID: 16574465

Chelikani S, Purushothaman K, Knisely J, Chen Z, Nath R, Bansal R, Duncan J: A gradient feature weighted Minimax algorithm for registration of multiple portal images to 3DCT volumes in prostate radiotherapy. Int J Radiat Oncol Biol Phys. 2006 Jun 1. PMID: 16690436

Munbodh R, Jaffray DA, Moseley DJ, Chen Z, Knisely JP, Cathier P, Duncan JS: Automated 2D-3D registration of a radiograph and a cone beam CT using line-segment enhancement. Med Phys. 2006 May. PMID: 16752576

Papademetris X, Jackowski MP, Rajeevan N, DiStasio M, Okuda H, Constable RT, Staib LH: BioImage Suite: An integrated medical image analysis suite: An update. Insight J. 2006. PMID: 25364771

DeLorenzo C, Papademetris X, Wu K, Vives KP, Spencer D, Duncan JS: Nonrigid 3D brain registration using intensity/feature information. Med Image Comput Comput Assist Interv. 2006. PMID: 17354980

Staib LH, Jackowski M, Papademetris X: Brain Shape Characterization from Deformation. Proc IEEE Int Symp Biomed Imaging. 2006. PMID: 20216923

Blumberg HP, Fredericks C, Wang F, Kalmar JH, Spencer L, Papademetris X, Pittman B, Martin A, Peterson BS, Fulbright RK, Krystal JH: Preliminary evidence for persistent abnormalities in amygdala volumes in adolescents and young adults with bipolar disorder. Bipolar Disord. 2005 Dec. PMID: 16403182

Jackowski M, Kao CY, Qiu M, Constable RT, Staib LH: White matter tractography by anisotropic wavefront evolution and diffusion tensor imaging. Med Image Anal. 2005 Oct. PMID: 16040268

Weiss R, Taksali SE, Dufour S, Yeckel CW, Papademetris X, Cline G, Tamborlane WV, Dziura J, Shulman GI, Caprio S: The "obese insulin-sensitive" adolescent: importance of adiponectin and lipid partitioning. J Clin Endocrinol Metab. 2005 Jun; 2005 Mar 29. PMID: 15797955

Wang J, Qiu M, Papademetris X, Todd Constable R: Brain tissue segmentation based on corrected gray-scale analysis. Conf Proc IEEE Eng Med Biol Soc. 2005. PMID: 17282881

Tao Z, Tagare HD: Tunneling descent level set segmentation of ultrasound images. Inf Process Med Imaging. 2005. PMID: 17354741

Papademetris X, Shkarin P, Staib LH, Behar KL: Regional whole body fat quantification in mice. Inf Process Med Imaging. 2005. PMID: 17354710

Papademetris X, Dione DP, Dobrucki LW, Staib LH, Sinusas AJ: Articulated rigid registration for serial lower-limb mouse imaging. Med Image Comput Comput Assist Interv. 2005. PMID: 16686048

Jackowski M, Papademetris X, Dobrucki LW, Sinusas AJ, Staib LH: Characterizing vascular connectivity from microCT images. Med Image Comput Comput Assist Interv. 2005. PMID: 16686021

Qian X, Tagare HD: Optimal embedding for shape indexing in medical image databases. Med Image Comput Comput Assist Interv. 2005. PMID: 16685982

Yan P, Lin N, Sinusas AJ, Duncan JS: A boundary element-based approach to analysis of LV deformation. Med Image Comput Comput Assist Interv. 2005. PMID: 16685917

Hadjidemetriou S, Toomre D, Duncan JS: Segmentation and 3D reconstruction of microtubules in total internal reflection fluorescence microscopy (TIRFM). Med Image Comput Comput Assist Interv. 2005. PMID: 16685915

Yang J, Duncan JS: 3D image segmentation of deformable objects with joint shape-intensity prior models using level sets. Med Image Anal. 2004 Sep. PMID: 15450223

Yang J, Staib LH, Duncan JS: Neighbor-constrained segmentation with level set based 3-D deformable models. IEEE Trans Med Imaging. 2004 Aug. PMID: 15338728

Yang J, Duncan JS: Joint Prior Models of Neighboring Objects for 3D Image Segmentation. Proc IEEE Comput Soc Conf Comput Vis Pattern Recognit. 2004 Jun 27. PMID: 20448825

Kier EL, Staib LH, Davis LM, Bronen RA: MR imaging of the temporal stem: anatomic dissection tractography of the uncinate fasciculus, inferior occipitofrontal fasciculus, and Meyer's loop of the optic radiation. AJNR Am J Neuroradiol. 2004 May. PMID: 15140705

Kier EL, Staib LH, Davis LM, Bronen RA: Anatomic dissection tractography: a new method for precise MR localization of white matter tracts. AJNR Am J Neuroradiol. 2004 May. PMID: 15140704

Chelikani S, Gore J, Zubal G: Optimizing Compton camera geometries. Phys Med Biol. 2004 Apr 21. PMID: 15152681

Yang J, Tagare HD, Staib LH, Duncan JS: SEGMENTATION OF 3D DEFORMABLE OBJECTS WITH LEVEL SET BASED PRIOR MODELS. Proc IEEE Int Symp Biomed Imaging. 2004 Apr 15. PMID: 20300448

Yang J, Papademetris X, Staib LH, Schultz RT, Duncan JS: Functional Brain Image Analysis Using Joint Function-Structure Priors. Med Image Comput Comput Assist Interv. 2004 Jan 1. PMID: 20543899

Duncan JS, Papademetris X, Yang J, Jackowski M, Zeng X, Staib LH: Geometric strategies for neuroanatomic analysis from MRI. Neuroimage. 2004. PMID: 15501099

Lin N, Yu W, Duncan JS: Combinative multi-scale level set framework for echocardiographic image segmentation. Med Image Anal. 2003 Dec. PMID: 14561556

Wang YM, Schultz RT, Constable RT, Staib LH: Nonlinear estimation and modeling of fMRI data using spatio-temporal support vector regression. Inf Process Med Imaging. 2003 Jul. PMID: 15344495

Tao Z, Jaffe CC, Tagare HD: Tunnelling descent: a new algorithm for active contour segmentation of ultrasound images. Inf Process Med Imaging. 2003 Jul. PMID: 15344462

Yang J, Staib LH, Duncan JS: Neighbor-constrained segmentation with 3D deformable models. Inf Process Med Imaging. 2003 Jul. PMID: 15344458

Bansal R, Staib LH, Chen Z, Rangarajan A, Knisely J, Nath R, Duncan JS: Entropy-based dual-portal-to-3-DCT registration incorporating pixel correlation. IEEE Trans Med Imaging. 2003 Jan. PMID: 12703758

Skrinjar O, Nabavi A, Duncan J: Model-driven brain shift compensation. Med Image Anal. 2002 Dec. PMID: 12494947

Papademetris X, Sinusas AJ, Dione DP, Constable RT, Duncan JS: Estimation of 3-D left ventricular deformation from medical images using biomechanical models. IEEE Trans Med Imaging. 2002 Jul. PMID: 12374316

Papademetris X, Jackowski AP, Schultz RT, Staib LH, Duncan JS: Integrated Intensity and Point-Feature Nonrigid Registration. Med Image Comput Comput Assist Interv. 2001 Sep 2. PMID: 20473359

Bremner JD, Bronen RA, De Erasquin G, Vermetten E, Staib LH, Ng CK, Soufer R, Charney DS, Innis RB: Development and Reliability of a Method for Using Magnetic Resonance Imaging for the Definition of Regions of Interest for Positron Emission Tomography. Clin Positron Imaging. 1998 Jun. PMID: 14516589